RNA–Protein interactions for RNA: ENST00000484986.1

PTPRN-215, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 545 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-215ENST00000484986 ERC2-IT1O76042 136 aa12.4□□□□□ -0.42
PTPRN-215ENST00000484986 PLNP26678 52 aa12.4□□□□□ -0.42
PTPRN-215ENST00000484986 Q8N377 158 aa12.4□□□□□ -0.42
PTPRN-215ENST00000484986 PMCHL2Q9BQD1 86 aa12.39□□□□□ -0.43
PTPRN-215ENST00000484986 Q9BRP9 147 aa12.39□□□□□ -0.43
PTPRN-215ENST00000484986 DPM2O94777 84 aa12.38□□□□□ -0.43
PTPRN-215ENST00000484986 TSPEAR-AS2P59090 65 aa12.38□□□□□ -0.43
PTPRN-215ENST00000484986 JOSD1Q15040 202 aaPredicted RBP12.38□□□□□ -0.43
PTPRN-215ENST00000484986 COA6Q5JTJ3 125 aaKnown RBP12.38□□□□□ -0.43
PTPRN-215ENST00000484986 S100A7L2Q5SY68 101 aa12.38□□□□□ -0.43
PTPRN-215ENST00000484986 J3QQQ9 107 aa12.37□□□□□ -0.43
PTPRN-215ENST00000484986 NDUFC2O95298 119 aa12.37□□□□□ -0.43
PTPRN-215ENST00000484986 NMUP48645 174 aa12.37□□□□□ -0.43
PTPRN-215ENST00000484986 HERVK_113P61574 105 aa12.37□□□□□ -0.43
PTPRN-215ENST00000484986 IGKCP01834 107 aa12.36□□□□□ -0.43
PTPRN-215ENST00000484986 SYS1-DBNDD2H3BUS1 97 aa12.35□□□□□ -0.43
PTPRN-215ENST00000484986 IGLV6-57P01721 117 aa12.35□□□□□ -0.43
PTPRN-215ENST00000484986 LGALS3P17931 250 aaKnown RBP12.33□□□□□ -0.44
PTPRN-215ENST00000484986 TRAV23DV6A0A075B6W5 121 aa12.32□□□□□ -0.44
PTPRN-215ENST00000484986 PET117Q6UWS5 81 aa12.32□□□□□ -0.44
PTPRN-215ENST00000484986 KRTDAPP60985 99 aa12.31□□□□□ -0.44
PTPRN-215ENST00000484986 C9orf153Q5TBE3 101 aa12.31□□□□□ -0.44
PTPRN-215ENST00000484986 CBY1Q9Y3M2 126 aa12.31□□□□□ -0.44
PTPRN-215ENST00000484986 C5orf52A6NGY3 159 aa12.3□□□□□ -0.44
PTPRN-215ENST00000484986 KRTAP4-1Q9BYQ7 146 aa12.3□□□□□ -0.44
PTPRN-215ENST00000484986 ZNF73O43830 326 aaPredicted RBP12.29□□□□□ -0.44
PTPRN-215ENST00000484986 S100A6P06703 90 aa12.29□□□□□ -0.44
PTPRN-215ENST00000484986 C3orf79P0CE67 100 aa12.29□□□□□ -0.44
PTPRN-215ENST00000484986 XP32Q5T750 250 aa12.29□□□□□ -0.44
PTPRN-215ENST00000484986 HINT1P49773 126 aaPredicted RBP12.28□□□□□ -0.44
PTPRN-215ENST00000484986 S100A2P29034 98 aa12.27□□□□□ -0.45
PTPRN-215ENST00000484986 LINC01545Q5VT33 79 aa12.26□□□□□ -0.45
PTPRN-215ENST00000484986 C20orf202A1L168 122 aa12.24□□□□□ -0.45
PTPRN-215ENST00000484986 A0A0J9YXY3 114 aa12.22□□□□□ -0.45
PTPRN-215ENST00000484986 NPC2P61916 151 aa12.22□□□□□ -0.45
PTPRN-215ENST00000484986 SLC25A34Q6PIV7 304 aa12.22□□□□□ -0.45
PTPRN-215ENST00000484986 SOSTDC1Q6X4U4 206 aa12.22□□□□□ -0.45
PTPRN-215ENST00000484986 HIST3H2BBQ8N257 126 aa12.22□□□□□ -0.45
PTPRN-215ENST00000484986 ST20-AS1Q8NBB2 130 aa12.22□□□□□ -0.45
PTPRN-215ENST00000484986 E9PLD3 99 aa12.21□□□□□ -0.45
PTPRN-215ENST00000484986 ADAMTSL4-AS1Q5T5F5 129 aa12.21□□□□□ -0.45
PTPRN-215ENST00000484986 LIMD2Q9BT23 127 aa12.2□□□□□ -0.46
PTPRN-215ENST00000484986 EIF4EBP3O60516 100 aaPredicted RBP12.18□□□□□ -0.46
PTPRN-215ENST00000484986 SNRPEP62304 92 aaKnown RBP12.18□□□□□ -0.46
PTPRN-215ENST00000484986 LCE2DQ5TA82 110 aaPredicted RBP12.18□□□□□ -0.46
PTPRN-215ENST00000484986 DHRS4-AS1Q9P1J3 65 aa12.18□□□□□ -0.46
PTPRN-215ENST00000484986 SPRR1BP22528 89 aa12.17□□□□□ -0.46
PTPRN-215ENST00000484986 HIST1H2BLQ99880 126 aa12.17□□□□□ -0.46
PTPRN-215ENST00000484986 SPANXCQ9NY87 97 aa12.17□□□□□ -0.46
PTPRN-215ENST00000484986 AKR1D1P51857 326 aa12.16□□□□□ -0.46
PTPRN-215ENST00000484986 OR13C6PQ8NH95 151 aa12.15□□□□□ -0.46
PTPRN-215ENST00000484986 ATOH7Q8N100 152 aa12.14□□□□□ -0.47
PTPRN-215ENST00000484986 LAMTOR3Q9UHA4 124 aa12.14□□□□□ -0.47
PTPRN-215ENST00000484986 LINC00308Q8TCZ7 52 aa12.13□□□□□ -0.47
PTPRN-215ENST00000484986 TIMM17BO60830 172 aa12.12□□□□□ -0.47
PTPRN-215ENST00000484986 SPANXDQ9BXN6 97 aa12.11□□□□□ -0.47
PTPRN-215ENST00000484986 HRCT1Q6UXD1 115 aa12.1□□□□□ -0.47
PTPRN-215ENST00000484986 LITAFQ99732 161 aa12.1□□□□□ -0.47
PTPRN-215ENST00000484986 ZNF815PA8K554 130 aa12.09□□□□□ -0.47
PTPRN-215ENST00000484986 FSIP2Q5CZC0 6907 aa12.07□□□□□ -0.48
PTPRN-215ENST00000484986 LCE2CQ5TA81 110 aa12.07□□□□□ -0.48
PTPRN-215ENST00000484986 LINC00518Q8N0U6 118 aa12.07□□□□□ -0.48
PTPRN-215ENST00000484986 COX7BP24311 80 aa12.06□□□□□ -0.48
PTPRN-215ENST00000484986 ELOF1P60002 83 aaKnown RBP12.06□□□□□ -0.48
PTPRN-215ENST00000484986 CD164Q04900 197 aa12.06□□□□□ -0.48
PTPRN-215ENST00000484986 ANKRD39Q53RE8 183 aa12.06□□□□□ -0.48
PTPRN-215ENST00000484986 PCOTHQ58A44 107 aa12.06□□□□□ -0.48
PTPRN-215ENST00000484986 TTTY13Q9BZ97 58 aa12.06□□□□□ -0.48
PTPRN-215ENST00000484986 IGLV8-61A0A075B6I0 122 aa12.05□□□□□ -0.48
PTPRN-215ENST00000484986 SCGB1D1O95968 90 aa12.05□□□□□ -0.48
PTPRN-215ENST00000484986 TAL2Q16559 108 aa12.05□□□□□ -0.48
PTPRN-215ENST00000484986 C9orf92A6NGG3 77 aa12.04□□□□□ -0.48
PTPRN-215ENST00000484986 HSBP1L1C9JCN9 74 aa12.04□□□□□ -0.48
PTPRN-215ENST00000484986 PRO1933Q9H354 126 aa12.04□□□□□ -0.48
PTPRN-215ENST00000484986 C6orf99Q4VX62 202 aa12.03□□□□□ -0.48
PTPRN-215ENST00000484986 SCGB1D4Q6XE38 83 aa12.03□□□□□ -0.48
PTPRN-215ENST00000484986 TEX49A0A1B0GTD5 131 aa12.01□□□□□ -0.49
PTPRN-215ENST00000484986 Q1RN00 199 aa12.01□□□□□ -0.49
PTPRN-215ENST00000484986 DEFB105AQ8NG35 78 aa12.01□□□□□ -0.49
PTPRN-215ENST00000484986 H7C2G1 150 aa12□□□□□ -0.49
PTPRN-215ENST00000484986 CFC1BP0CG36 223 aa12□□□□□ -0.49
PTPRN-215ENST00000484986 KRTAP19-2Q3LHN2 52 aa12□□□□□ -0.49
PTPRN-215ENST00000484986 TRBV7-6A0A0J9YX20 115 aa11.99□□□□□ -0.49
PTPRN-215ENST00000484986 CRCT1Q9UGL9 99 aa11.99□□□□□ -0.49
PTPRN-215ENST00000484986 Q5XG85 94 aa11.98□□□□□ -0.49
PTPRN-215ENST00000484986 MT1HP80294 61 aa11.97□□□□□ -0.49
PTPRN-215ENST00000484986 PCP2Q8IVA1 136 aa11.97□□□□□ -0.49
PTPRN-215ENST00000484986 COPS9Q8WXC6 57 aa11.97□□□□□ -0.49
PTPRN-215ENST00000484986 TMA7Q9Y2S6 64 aaKnown RBP11.95□□□□□ -0.5
PTPRN-215ENST00000484986 A0A1B0GWB2 263 aa11.94□□□□□ -0.5
PTPRN-215ENST00000484986 SMIM29Q86T20 159 aa11.91□□□□□ -0.5
PTPRN-215ENST00000484986 IGLV5-48A0A075B6I7 105 aa11.9□□□□□ -0.5
PTPRN-215ENST00000484986 C1orf195Q5TG92 126 aa11.9□□□□□ -0.5
PTPRN-215ENST00000484986 A4D1N5 150 aa11.89□□□□□ -0.51
PTPRN-215ENST00000484986 A6NDN8 102 aa11.89□□□□□ -0.51
PTPRN-215ENST00000484986 IFITM1P13164 125 aa11.89□□□□□ -0.51
PTPRN-215ENST00000484986 Q6ZVH6 145 aa11.87□□□□□ -0.51
PTPRN-215ENST00000484986 NHP2Q9NX24 153 aaKnown RBP11.87□□□□□ -0.51
PTPRN-215ENST00000484986 RPL37P61927 97 aaKnown RBP11.85□□□□□ -0.51
PTPRN-215ENST00000484986 MUSTN1Q8IVN3 82 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms