RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 DAD1P61803 113 aa8.89□□□□□ -0.99
USP40-214ENST00000483519 LELP1Q5T871 98 aa8.89□□□□□ -0.99
USP40-214ENST00000483519 A0A0A0MQY5 61 aa8.89□□□□□ -0.99
USP40-214ENST00000483519 PRR34Q9NV39 138 aa8.89□□□□□ -0.99
USP40-214ENST00000483519 KLK12Q9UKR0 248 aa8.88□□□□□ -0.99
USP40-214ENST00000483519 DEFB4AO15263 64 aa8.86□□□□□ -0.99
USP40-214ENST00000483519 MDFIQ99750 246 aa8.86□□□□□ -0.99
USP40-214ENST00000483519 M0R378 163 aa8.85□□□□□ -0.99
USP40-214ENST00000483519 IGKV4-1P06312 121 aa8.85□□□□□ -0.99
USP40-214ENST00000483519 DEFB135Q30KP9 77 aa8.85□□□□□ -0.99
USP40-214ENST00000483519 LINC00474Q9P2X8 69 aa8.85□□□□□ -0.99
USP40-214ENST00000483519 PRYO14603 147 aa8.84□□□□□ -0.99
USP40-214ENST00000483519 LINC00528Q8N1L1 170 aa8.84□□□□□ -0.99
USP40-214ENST00000483519 Q8N9L7 120 aa8.83□□□□□ -1
USP40-214ENST00000483519 OCR1Q9BZK8 76 aa8.83□□□□□ -1
USP40-214ENST00000483519 COL6A5A8TX70 2615 aa8.82□□□□□ -1
USP40-214ENST00000483519 A0A0U1RQV1 116 aa8.82□□□□□ -1
USP40-214ENST00000483519 CAMK2N2Q96S95 79 aa8.82□□□□□ -1
USP40-214ENST00000483519 CELA1Q9UNI1 258 aa8.82□□□□□ -1
USP40-214ENST00000483519 HIGD2BQ4VC39 106 aa8.82□□□□□ -1
USP40-214ENST00000483519 APOC4P55056 127 aa8.82□□□□□ -1
USP40-214ENST00000483519 EGFEM1PQ0D2K5 195 aa8.82□□□□□ -1
USP40-214ENST00000483519 HTN3P15516 51 aa8.81□□□□□ -1
USP40-214ENST00000483519 KRTAP10-3P60369 221 aa8.81□□□□□ -1
USP40-214ENST00000483519 FUSP35637 526 aaKnown RBP eCLIP8.8□□□□□ -1
USP40-214ENST00000483519 SPART-AS1P0CW21 52 aa8.79□□□□□ -1
USP40-214ENST00000483519 PMAIP1Q13794 54 aa8.78□□□□□ -1
USP40-214ENST00000483519 Q8NAQ8 132 aa8.78□□□□□ -1
USP40-214ENST00000483519 BRK1Q8WUW1 75 aa8.78□□□□□ -1
USP40-214ENST00000483519 C3orf84H3BNL1 204 aa8.77□□□□□ -1.01
USP40-214ENST00000483519 ESRGQ1W209 222 aa8.77□□□□□ -1.01
USP40-214ENST00000483519 FAM229BQ4G0N7 80 aa8.76□□□□□ -1.01
USP40-214ENST00000483519 FBN1P35555 2871 aaKnown RBP8.76□□□□□ -1.01
USP40-214ENST00000483519 NBEAL2Q6ZNJ1 2754 aa8.76□□□□□ -1.01
USP40-214ENST00000483519 Q6ZRU5 148 aa8.76□□□□□ -1.01
USP40-214ENST00000483519 MPLKIPQ8TAP9 179 aa8.75□□□□□ -1.01
USP40-214ENST00000483519 HIGD2AQ9BW72 106 aa8.75□□□□□ -1.01
USP40-214ENST00000483519 A0A1B0GW54 56 aa8.74□□□□□ -1.01
USP40-214ENST00000483519 STAB1Q9NY15 2570 aa8.74□□□□□ -1.01
USP40-214ENST00000483519 Q6ZTC4 211 aa8.74□□□□□ -1.01
USP40-214ENST00000483519 IGLV5-48A0A075B6I7 105 aa8.73□□□□□ -1.01
USP40-214ENST00000483519 KPRPQ5T749 579 aaPredicted RBP8.72□□□□□ -1.01
USP40-214ENST00000483519 DEFB105AQ8NG35 78 aa8.72□□□□□ -1.01
USP40-214ENST00000483519 MRPL55Q7Z7F7 128 aaKnown RBP8.71□□□□□ -1.01
USP40-214ENST00000483519 C15orf56Q8N910 161 aa8.71□□□□□ -1.01
USP40-214ENST00000483519 KCNQ1DNQ9H478 68 aa8.71□□□□□ -1.01
USP40-214ENST00000483519 KRTAP26-1Q6PEX3 210 aa8.71□□□□□ -1.02
USP40-214ENST00000483519 SMIM29Q86T20 159 aa8.71□□□□□ -1.02
USP40-214ENST00000483519 Q8N377 158 aa8.71□□□□□ -1.02
USP40-214ENST00000483519 NKAPP1Q8N9T2 125 aa8.71□□□□□ -1.02
USP40-214ENST00000483519 Q6ZRP5 223 aa8.7□□□□□ -1.02
USP40-214ENST00000483519 WFDC10BQ8IUB3 73 aa8.7□□□□□ -1.02
USP40-214ENST00000483519 FAM30AQ9NZY2 134 aa8.69□□□□□ -1.02
USP40-214ENST00000483519 TENM1Q9UKZ4 2725 aa8.69□□□□□ -1.02
USP40-214ENST00000483519 LCE6AA0A183 80 aa8.68□□□□□ -1.02
USP40-214ENST00000483519 DHRS4-AS1Q9P1J3 65 aa8.68□□□□□ -1.02
USP40-214ENST00000483519 hDV103S1A0JD37 113 aa8.66□□□□□ -1.02
USP40-214ENST00000483519 SYCNQ0VAF6 134 aa8.66□□□□□ -1.02
USP40-214ENST00000483519 C7orf33Q8WU49 177 aa8.66□□□□□ -1.02
USP40-214ENST00000483519 A0A1W2PNM2 257 aa8.65□□□□□ -1.02
USP40-214ENST00000483519 H3BNG1 76 aa8.65□□□□□ -1.02
USP40-214ENST00000483519 C1orf137Q5JT78 98 aa8.65□□□□□ -1.02
USP40-214ENST00000483519 J3QL48 77 aa8.64□□□□□ -1.03
USP40-214ENST00000483519 Q6ZRX8 168 aa8.64□□□□□ -1.03
USP40-214ENST00000483519 Q8NBF4 154 aa8.64□□□□□ -1.03
USP40-214ENST00000483519 ETDCA0A1B0GVM5 59 aa8.63□□□□□ -1.03
USP40-214ENST00000483519 TNP2Q05952 138 aa8.63□□□□□ -1.03
USP40-214ENST00000483519 IGKV2D-24A0A075B6R9 120 aa8.61□□□□□ -1.03
USP40-214ENST00000483519 ZCCHC13Q8WW36 166 aaKnown RBP8.61□□□□□ -1.03
USP40-214ENST00000483519 SPRR4Q96PI1 79 aa8.61□□□□□ -1.03
USP40-214ENST00000483519 Q1T7F1 81 aa8.6□□□□□ -1.03
USP40-214ENST00000483519 C1orf64Q8NEQ6 169 aa8.6□□□□□ -1.03
USP40-214ENST00000483519 Q9BRP9 147 aa8.6□□□□□ -1.03
USP40-214ENST00000483519 PLA2G2DQ9UNK4 145 aa8.6□□□□□ -1.03
USP40-214ENST00000483519 DSCR10P59022 87 aa8.6□□□□□ -1.03
USP40-214ENST00000483519 KRTAP4-16G5E9R7 235 aaPredicted RBP8.59□□□□□ -1.03
USP40-214ENST00000483519 K7EQZ3 153 aa8.59□□□□□ -1.03
USP40-214ENST00000483519 TLX1NBP0CAT3 122 aa8.58□□□□□ -1.04
USP40-214ENST00000483519 LINC01556Q5JQF7 62 aa8.58□□□□□ -1.04
USP40-214ENST00000483519 RPL37AP8A6NKH3 93 aa8.57□□□□□ -1.04
USP40-214ENST00000483519 SPRR1AP35321 89 aa8.57□□□□□ -1.04
USP40-214ENST00000483519 IGLV1-50A0A075B6I6 118 aa8.57□□□□□ -1.04
USP40-214ENST00000483519 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.57□□□□□ -1.04
USP40-214ENST00000483519 ST20-AS1Q8NBB2 130 aa8.57□□□□□ -1.04
USP40-214ENST00000483519 IGLV5-37A0A075B6J1 123 aa8.56□□□□□ -1.04
USP40-214ENST00000483519 HCG22E2RYF7 251 aa8.56□□□□□ -1.04
USP40-214ENST00000483519 PRR15Q8IV56 129 aa8.56□□□□□ -1.04
USP40-214ENST00000483519 CYP4F30PQ9H0H9 118 aa8.56□□□□□ -1.04
USP40-214ENST00000483519 LRCOL1A6NCL2 159 aa8.55□□□□□ -1.04
USP40-214ENST00000483519 NDUFB1O75438 58 aa8.55□□□□□ -1.04
USP40-214ENST00000483519 ANK2Q01484 3957 aa8.55□□□□□ -1.04
USP40-214ENST00000483519 VWFP04275 2813 aa8.54□□□□□ -1.04
USP40-214ENST00000483519 RBM12B-AS1Q9P1G2 102 aa8.53□□□□□ -1.04
USP40-214ENST00000483519 C8orf87E5RJ46 101 aa8.52□□□□□ -1.04
USP40-214ENST00000483519 MGAM2Q2M2H8 2515 aa8.52□□□□□ -1.04
USP40-214ENST00000483519 FAM168BA1KXE4 195 aa8.52□□□□□ -1.05
USP40-214ENST00000483519 UBE2BP63146 152 aa8.52□□□□□ -1.05
USP40-214ENST00000483519 PSCAO43653 123 aa8.51□□□□□ -1.05
USP40-214ENST00000483519 MP68P56378 58 aa8.5□□□□□ -1.05
USP40-214ENST00000483519 LINC00476Q8WZB0 136 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms