RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 S100A2P29034 98 aa10.64□□□□□ -0.71
CCDC88B-206ENST00000473405 S100A12P80511 92 aa10.64□□□□□ -0.71
CCDC88B-206ENST00000473405 SPANXB1Q9NS25 103 aaPredicted RBP10.64□□□□□ -0.71
CCDC88B-206ENST00000473405 IGKCP01834 107 aa10.63□□□□□ -0.71
CCDC88B-206ENST00000473405 HERVK_113P61574 105 aa10.63□□□□□ -0.71
CCDC88B-206ENST00000473405 GAGE2AQ6NT46 116 aa10.63□□□□□ -0.71
CCDC88B-206ENST00000473405 Q6ZRX8 168 aa10.63□□□□□ -0.71
CCDC88B-206ENST00000473405 IGLV6-57P01721 117 aa10.62□□□□□ -0.71
CCDC88B-206ENST00000473405 LINC01545Q5VT33 79 aa10.62□□□□□ -0.71
CCDC88B-206ENST00000473405 EIF4EBP3O60516 100 aaPredicted RBP10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 NDUFC2O95298 119 aa10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 SPINK1P00995 79 aa10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 LGALS3P17931 250 aaKnown RBP10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 KRTAP13-3Q3SY46 172 aa10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 PET117Q6UWS5 81 aa10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 SOSTDC1Q6X4U4 206 aa10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 MIEN1Q9BRT3 115 aa10.61□□□□□ -0.71
CCDC88B-206ENST00000473405 MOBPQ13875 183 aa10.6□□□□□ -0.71
CCDC88B-206ENST00000473405 IGLV9-49A0A0B4J1Y8 123 aa10.59□□□□□ -0.71
CCDC88B-206ENST00000473405 KRTDAPP60985 99 aa10.59□□□□□ -0.71
CCDC88B-206ENST00000473405 A0A0J9YXY3 114 aa10.58□□□□□ -0.72
CCDC88B-206ENST00000473405 S100A7L2Q5SY68 101 aa10.58□□□□□ -0.72
CCDC88B-206ENST00000473405 ADAMTSL4-AS1Q5T5F5 129 aa10.58□□□□□ -0.72
CCDC88B-206ENST00000473405 TRAV23DV6A0A075B6W5 121 aa10.57□□□□□ -0.72
CCDC88B-206ENST00000473405 NPC2P61916 151 aa10.57□□□□□ -0.72
CCDC88B-206ENST00000473405 E9PLD3 99 aa10.56□□□□□ -0.72
CCDC88B-206ENST00000473405 RPS29P62273 56 aaKnown RBP10.55□□□□□ -0.72
CCDC88B-206ENST00000473405 SSBP3-AS1Q7Z2R9 100 aa10.55□□□□□ -0.72
CCDC88B-206ENST00000473405 Q8N377 158 aa10.55□□□□□ -0.72
CCDC88B-206ENST00000473405 KRTAP9-2Q9BYQ4 174 aa10.55□□□□□ -0.72
CCDC88B-206ENST00000473405 ZNF73O43830 326 aaPredicted RBP10.53□□□□□ -0.72
CCDC88B-206ENST00000473405 JOSD1Q15040 202 aaPredicted RBP10.52□□□□□ -0.73
CCDC88B-206ENST00000473405 LITAFQ99732 161 aa10.52□□□□□ -0.73
CCDC88B-206ENST00000473405 ASB16-AS1Q495Z4 193 aa10.51□□□□□ -0.73
CCDC88B-206ENST00000473405 LOC105371267A0A1B0GV96 52 aa10.5□□□□□ -0.73
CCDC88B-206ENST00000473405 ST20-AS1Q8NBB2 130 aa10.5□□□□□ -0.73
CCDC88B-206ENST00000473405 C20orf202A1L168 122 aa10.49□□□□□ -0.73
CCDC88B-206ENST00000473405 PYY3Q5JQD4 70 aa10.48□□□□□ -0.73
CCDC88B-206ENST00000473405 C9orf153Q5TBE3 101 aa10.48□□□□□ -0.73
CCDC88B-206ENST00000473405 SLC25A20O43772 301 aa10.47□□□□□ -0.73
CCDC88B-206ENST00000473405 ATOH7Q8N100 152 aa10.47□□□□□ -0.73
CCDC88B-206ENST00000473405 LINC00308Q8TCZ7 52 aa10.47□□□□□ -0.73
CCDC88B-206ENST00000473405 KRTAP4-1Q9BYQ7 146 aa10.47□□□□□ -0.73
CCDC88B-206ENST00000473405 SPANXCQ9NY87 97 aa10.47□□□□□ -0.73
CCDC88B-206ENST00000473405 TIMM17BO60830 172 aa10.46□□□□□ -0.73
CCDC88B-206ENST00000473405 SCGB1D1O95968 90 aa10.44□□□□□ -0.74
CCDC88B-206ENST00000473405 AKR1D1P51857 326 aa10.44□□□□□ -0.74
CCDC88B-206ENST00000473405 ANKRD39Q53RE8 183 aa10.43□□□□□ -0.74
CCDC88B-206ENST00000473405 TTTY13Q9BZ97 58 aa10.43□□□□□ -0.74
CCDC88B-206ENST00000473405 CBY1Q9Y3M2 126 aa10.43□□□□□ -0.74
CCDC88B-206ENST00000473405 OR13C6PQ8NH95 151 aa10.42□□□□□ -0.74
CCDC88B-206ENST00000473405 ZNF815PA8K554 130 aa10.41□□□□□ -0.74
CCDC88B-206ENST00000473405 SPRR1BP22528 89 aa10.41□□□□□ -0.74
CCDC88B-206ENST00000473405 HINT1P49773 126 aaPredicted RBP10.41□□□□□ -0.74
CCDC88B-206ENST00000473405 SEC61BP60468 96 aaKnown RBP10.41□□□□□ -0.74
CCDC88B-206ENST00000473405 XP32Q5T750 250 aa10.4□□□□□ -0.74
CCDC88B-206ENST00000473405 SPANXDQ9BXN6 97 aa10.4□□□□□ -0.74
CCDC88B-206ENST00000473405 DHRS4-AS1Q9P1J3 65 aa10.39□□□□□ -0.75
CCDC88B-206ENST00000473405 ELOF1P60002 83 aaKnown RBP10.38□□□□□ -0.75
CCDC88B-206ENST00000473405 C6orf99Q4VX62 202 aa10.35□□□□□ -0.75
CCDC88B-206ENST00000473405 COX7BP24311 80 aa10.34□□□□□ -0.75
CCDC88B-206ENST00000473405 SLC25A34Q6PIV7 304 aa10.34□□□□□ -0.75
CCDC88B-206ENST00000473405 SMIM6P0DI80 62 aa10.33□□□□□ -0.76
CCDC88B-206ENST00000473405 LINC00518Q8N0U6 118 aa10.33□□□□□ -0.76
CCDC88B-206ENST00000473405 HRCT1Q6UXD1 115 aa10.32□□□□□ -0.76
CCDC88B-206ENST00000473405 PCP2Q8IVA1 136 aa10.32□□□□□ -0.76
CCDC88B-206ENST00000473405 VAMP8Q9BV40 100 aa10.32□□□□□ -0.76
CCDC88B-206ENST00000473405 LIMD2Q9BT23 127 aa10.31□□□□□ -0.76
CCDC88B-206ENST00000473405 LAMTOR3Q9UHA4 124 aa10.31□□□□□ -0.76
CCDC88B-206ENST00000473405 PAM16Q9Y3D7 125 aa10.31□□□□□ -0.76
CCDC88B-206ENST00000473405 HSBP1L1C9JCN9 74 aa10.3□□□□□ -0.76
CCDC88B-206ENST00000473405 SPATA45Q537H7 98 aa10.3□□□□□ -0.76
CCDC88B-206ENST00000473405 LINC01547P58512 204 aaPredicted RBP10.29□□□□□ -0.76
CCDC88B-206ENST00000473405 Q1RN00 199 aa10.29□□□□□ -0.76
CCDC88B-206ENST00000473405 SCGB1D4Q6XE38 83 aa10.29□□□□□ -0.76
CCDC88B-206ENST00000473405 TRBV7-6A0A0J9YX20 115 aa10.28□□□□□ -0.76
CCDC88B-206ENST00000473405 COX8AP10176 69 aa10.27□□□□□ -0.77
CCDC88B-206ENST00000473405 DEFB105AQ8NG35 78 aa10.27□□□□□ -0.77
CCDC88B-206ENST00000473405 TAL2Q16559 108 aa10.26□□□□□ -0.77
CCDC88B-206ENST00000473405 TEX49A0A1B0GTD5 131 aa10.25□□□□□ -0.77
CCDC88B-206ENST00000473405 DLEU1O43261 78 aa10.25□□□□□ -0.77
CCDC88B-206ENST00000473405 IFITM1P13164 125 aa10.25□□□□□ -0.77
CCDC88B-206ENST00000473405 CD164Q04900 197 aa10.25□□□□□ -0.77
CCDC88B-206ENST00000473405 SMIM29Q86T20 159 aa10.25□□□□□ -0.77
CCDC88B-206ENST00000473405 A0A1B0GWB2 263 aa10.24□□□□□ -0.77
CCDC88B-206ENST00000473405 IGLV5-48A0A075B6I7 105 aa10.23□□□□□ -0.77
CCDC88B-206ENST00000473405 C9orf92A6NGG3 77 aa10.23□□□□□ -0.77
CCDC88B-206ENST00000473405 LCE2CQ5TA81 110 aa10.23□□□□□ -0.77
CCDC88B-206ENST00000473405 COPS9Q8WXC6 57 aa10.23□□□□□ -0.77
CCDC88B-206ENST00000473405 C14orf144Q96I85 54 aa10.23□□□□□ -0.77
CCDC88B-206ENST00000473405 PRO1933Q9H354 126 aa10.23□□□□□ -0.77
CCDC88B-206ENST00000473405 KRTAP9-6A0A140TA67 174 aa10.22□□□□□ -0.77
CCDC88B-206ENST00000473405 Q6ZVH6 145 aa10.22□□□□□ -0.77
CCDC88B-206ENST00000473405 MUSTN1Q8IVN3 82 aa10.22□□□□□ -0.77
CCDC88B-206ENST00000473405 C12orf57Q99622 126 aa10.22□□□□□ -0.77
CCDC88B-206ENST00000473405 A6NDN8 102 aa10.21□□□□□ -0.77
CCDC88B-206ENST00000473405 KRTAP19-2Q3LHN2 52 aa10.21□□□□□ -0.77
CCDC88B-206ENST00000473405 H7C2G1 150 aa10.2□□□□□ -0.78
CCDC88B-206ENST00000473405 C2orf91Q6ZV80 131 aa10.2□□□□□ -0.78
CCDC88B-206ENST00000473405 A0A0G2JQZ4 141 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms