RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SEC61BP60468 96 aaKnown RBP9.79□□□□□ -0.84
COL7A1-208ENST00000470076 PMCHL2Q9BQD1 86 aa9.79□□□□□ -0.84
COL7A1-208ENST00000470076 ZNF73O43830 326 aaPredicted RBP9.76□□□□□ -0.85
COL7A1-208ENST00000470076 C9orf153Q5TBE3 101 aa9.75□□□□□ -0.85
COL7A1-208ENST00000470076 SOSTDC1Q6X4U4 206 aa9.75□□□□□ -0.85
COL7A1-208ENST00000470076 CBY1Q9Y3M2 126 aa9.75□□□□□ -0.85
COL7A1-208ENST00000470076 A0A0J9YXY3 114 aa9.74□□□□□ -0.85
COL7A1-208ENST00000470076 C5orf52A6NGY3 159 aa9.74□□□□□ -0.85
COL7A1-208ENST00000470076 NPC2P61916 151 aa9.74□□□□□ -0.85
COL7A1-208ENST00000470076 ADAMTSL4-AS1Q5T5F5 129 aa9.74□□□□□ -0.85
COL7A1-208ENST00000470076 E9PLD3 99 aa9.73□□□□□ -0.85
COL7A1-208ENST00000470076 EIF4EBP3O60516 100 aaPredicted RBP9.73□□□□□ -0.85
COL7A1-208ENST00000470076 HINT1P49773 126 aaPredicted RBP9.73□□□□□ -0.85
COL7A1-208ENST00000470076 LINC01547P58512 204 aaPredicted RBP9.72□□□□□ -0.85
COL7A1-208ENST00000470076 KRTAP4-1Q9BYQ7 146 aa9.72□□□□□ -0.85
COL7A1-208ENST00000470076 ST20-AS1Q8NBB2 130 aa9.71□□□□□ -0.86
COL7A1-208ENST00000470076 XP32Q5T750 250 aa9.7□□□□□ -0.86
COL7A1-208ENST00000470076 SPANXCQ9NY87 97 aa9.69□□□□□ -0.86
COL7A1-208ENST00000470076 COLCA2A8K830 154 aa9.68□□□□□ -0.86
COL7A1-208ENST00000470076 KRTAP9-6A0A140TA67 174 aa9.67□□□□□ -0.86
COL7A1-208ENST00000470076 SLC25A34Q6PIV7 304 aa9.67□□□□□ -0.86
COL7A1-208ENST00000470076 LINC00308Q8TCZ7 52 aa9.67□□□□□ -0.86
COL7A1-208ENST00000470076 TIMM17BO60830 172 aa9.66□□□□□ -0.86
COL7A1-208ENST00000470076 SPRR1BP22528 89 aa9.66□□□□□ -0.86
COL7A1-208ENST00000470076 OR13C6PQ8NH95 151 aa9.66□□□□□ -0.86
COL7A1-208ENST00000470076 LITAFQ99732 161 aa9.66□□□□□ -0.86
COL7A1-208ENST00000470076 DHRS4-AS1Q9P1J3 65 aa9.66□□□□□ -0.86
COL7A1-208ENST00000470076 SYS1-DBNDD2H3BUS1 97 aa9.65□□□□□ -0.86
COL7A1-208ENST00000470076 LIMD2Q9BT23 127 aa9.64□□□□□ -0.87
COL7A1-208ENST00000470076 SPANXDQ9BXN6 97 aa9.64□□□□□ -0.87
COL7A1-208ENST00000470076 LINC01545Q5VT33 79 aa9.61□□□□□ -0.87
COL7A1-208ENST00000470076 LAMTOR3Q9UHA4 124 aa9.61□□□□□ -0.87
COL7A1-208ENST00000470076 ZNF815PA8K554 130 aa9.6□□□□□ -0.87
COL7A1-208ENST00000470076 LINC00518Q8N0U6 118 aa9.6□□□□□ -0.87
COL7A1-208ENST00000470076 COX7BP24311 80 aa9.59□□□□□ -0.87
COL7A1-208ENST00000470076 ELOF1P60002 83 aaKnown RBP9.59□□□□□ -0.87
COL7A1-208ENST00000470076 PET117Q6UWS5 81 aa9.59□□□□□ -0.87
COL7A1-208ENST00000470076 HIST1H2BKO60814 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BJP06899 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BOP23527 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BBP33778 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BDP58876 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BCP62807 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST2H2BEQ16778 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HRCT1Q6UXD1 115 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BHQ93079 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BNQ99877 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 HIST1H2BMQ99879 126 aa9.58□□□□□ -0.88
COL7A1-208ENST00000470076 C6orf99Q4VX62 202 aa9.57□□□□□ -0.88
COL7A1-208ENST00000470076 TAL2Q16559 108 aa9.56□□□□□ -0.88
COL7A1-208ENST00000470076 CD164Q04900 197 aa9.55□□□□□ -0.88
COL7A1-208ENST00000470076 TTTY13Q9BZ97 58 aa9.55□□□□□ -0.88
COL7A1-208ENST00000470076 LCE2DQ5TA82 110 aaPredicted RBP9.54□□□□□ -0.88
COL7A1-208ENST00000470076 PRO1933Q9H354 126 aa9.54□□□□□ -0.88
COL7A1-208ENST00000470076 TRBV7-6A0A0J9YX20 115 aa9.53□□□□□ -0.88
COL7A1-208ENST00000470076 TEX49A0A1B0GTD5 131 aa9.53□□□□□ -0.88
COL7A1-208ENST00000470076 Q1RN00 199 aa9.53□□□□□ -0.88
COL7A1-208ENST00000470076 DEFB105AQ8NG35 78 aa9.53□□□□□ -0.88
COL7A1-208ENST00000470076 C9orf92A6NGG3 77 aa9.52□□□□□ -0.89
COL7A1-208ENST00000470076 PCOTHQ58A44 107 aa9.52□□□□□ -0.89
COL7A1-208ENST00000470076 LCE2CQ5TA81 110 aa9.52□□□□□ -0.89
COL7A1-208ENST00000470076 C3orf79P0CE67 100 aa9.51□□□□□ -0.89
COL7A1-208ENST00000470076 S100A1P23297 94 aa9.51□□□□□ -0.89
COL7A1-208ENST00000470076 COPS9Q8WXC6 57 aa9.51□□□□□ -0.89
COL7A1-208ENST00000470076 H7C2G1 150 aa9.5□□□□□ -0.89
COL7A1-208ENST00000470076 SCGB1D4Q6XE38 83 aa9.5□□□□□ -0.89
COL7A1-208ENST00000470076 IGLV8-61A0A075B6I0 122 aa9.49□□□□□ -0.89
COL7A1-208ENST00000470076 A0A1B0GWB2 263 aa9.49□□□□□ -0.89
COL7A1-208ENST00000470076 Q5XG85 94 aa9.49□□□□□ -0.89
COL7A1-208ENST00000470076 IFITM1P13164 125 aa9.48□□□□□ -0.89
COL7A1-208ENST00000470076 AKR1D1P51857 326 aa9.48□□□□□ -0.89
COL7A1-208ENST00000470076 KRTAP19-2Q3LHN2 52 aa9.48□□□□□ -0.89
COL7A1-208ENST00000470076 IGLV5-48A0A075B6I7 105 aa9.47□□□□□ -0.89
COL7A1-208ENST00000470076 SMIM29Q86T20 159 aa9.47□□□□□ -0.89
COL7A1-208ENST00000470076 KRTDAPP60985 99 aa9.46□□□□□ -0.9
COL7A1-208ENST00000470076 Q6ZVH6 145 aa9.46□□□□□ -0.9
COL7A1-208ENST00000470076 A6NDN8 102 aa9.45□□□□□ -0.9
COL7A1-208ENST00000470076 C20orf202A1L168 122 aa9.44□□□□□ -0.9
COL7A1-208ENST00000470076 A4D1N5 150 aa9.44□□□□□ -0.9
COL7A1-208ENST00000470076 COA6Q5JTJ3 125 aaKnown RBP9.44□□□□□ -0.9
COL7A1-208ENST00000470076 ANKRD39Q53RE8 183 aa9.43□□□□□ -0.9
COL7A1-208ENST00000470076 C1orf195Q5TG92 126 aa9.43□□□□□ -0.9
COL7A1-208ENST00000470076 MT1HP80294 61 aa9.42□□□□□ -0.9
COL7A1-208ENST00000470076 NHP2Q9NX24 153 aaKnown RBP9.42□□□□□ -0.9
COL7A1-208ENST00000470076 MUSTN1Q8IVN3 82 aa9.41□□□□□ -0.9
COL7A1-208ENST00000470076 CFC1BP0CG36 223 aa9.4□□□□□ -0.9
COL7A1-208ENST00000470076 TRAV13-2A0A0B4J235 113 aa9.39□□□□□ -0.91
COL7A1-208ENST00000470076 FSIP2Q5CZC0 6907 aa9.38□□□□□ -0.91
COL7A1-208ENST00000470076 A0A0G2JQZ4 141 aa9.38□□□□□ -0.91
COL7A1-208ENST00000470076 PCP2Q8IVA1 136 aa9.38□□□□□ -0.91
COL7A1-208ENST00000470076 ATOH7Q8N100 152 aa9.38□□□□□ -0.91
COL7A1-208ENST00000470076 SMIM11BQ8TCY0 68 aa9.37□□□□□ -0.91
COL7A1-208ENST00000470076 CRCT1Q9UGL9 99 aa9.37□□□□□ -0.91
COL7A1-208ENST00000470076 TCL1BO95988 128 aa9.36□□□□□ -0.91
COL7A1-208ENST00000470076 RPL37P61927 97 aaKnown RBP9.36□□□□□ -0.91
COL7A1-208ENST00000470076 F8WEM9 126 aa9.33□□□□□ -0.92
COL7A1-208ENST00000470076 SNRPEP62304 92 aaKnown RBP9.33□□□□□ -0.92
COL7A1-208ENST00000470076 VAMP3Q15836 100 aa9.32□□□□□ -0.92
COL7A1-208ENST00000470076 LORP23490 312 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms