RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 BRK1Q8WUW1 75 aa8.26□□□□□ -1.09
HDAC4-208ENST00000463007 SRRM2Q9UQ35 2752 aaKnown RBP8.25□□□□□ -1.09
HDAC4-208ENST00000463007 IGKV2D-24A0A075B6R9 120 aa8.25□□□□□ -1.09
HDAC4-208ENST00000463007 LOC110117498A0A087WWA1 95 aa8.25□□□□□ -1.09
HDAC4-208ENST00000463007 RPL37AP8A6NKH3 93 aa8.25□□□□□ -1.09
HDAC4-208ENST00000463007 PRO0628Q9UI54 55 aa8.25□□□□□ -1.09
HDAC4-208ENST00000463007 LELP1Q5T871 98 aa8.25□□□□□ -1.09
HDAC4-208ENST00000463007 NREPQ16612 68 aa8.24□□□□□ -1.09
HDAC4-208ENST00000463007 SEC61GP60059 68 aa8.24□□□□□ -1.09
HDAC4-208ENST00000463007 PRR34Q9NV39 138 aa8.24□□□□□ -1.09
HDAC4-208ENST00000463007 CSMD3Q7Z407 3707 aa8.24□□□□□ -1.09
HDAC4-208ENST00000463007 A0A0J9YWU9 116 aa8.23□□□□□ -1.09
HDAC4-208ENST00000463007 KRTAP10-11P60412 298 aa8.22□□□□□ -1.09
HDAC4-208ENST00000463007 EGFEM1PQ0D2K5 195 aa8.21□□□□□ -1.09
HDAC4-208ENST00000463007 F8WDY8 70 aa8.21□□□□□ -1.1
HDAC4-208ENST00000463007 MGAM2Q2M2H8 2515 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 TMEM254Q8TBM7 123 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 FAM30AQ9NZY2 134 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 SERP1Q9Y6X1 66 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 A0A0G2JQZ4 141 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 A0A1W2PNN7 141 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 VPREB1P12018 145 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 ELOF1P60002 83 aaKnown RBP8.2□□□□□ -1.1
HDAC4-208ENST00000463007 PRR4Q16378 134 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 DNAH1Q9P2D7 4330 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 TRBV7-6A0A0J9YX20 115 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 TRBV7-4A0A0J9YYF1 115 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 KPRPQ5T749 579 aaPredicted RBP8.2□□□□□ -1.1
HDAC4-208ENST00000463007 Q6ZRP5 223 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 HIGD2AQ9BW72 106 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 V9GYY9 64 aa8.2□□□□□ -1.1
HDAC4-208ENST00000463007 NDUFC2-KCTD14E9PQ53 114 aa8.19□□□□□ -1.1
HDAC4-208ENST00000463007 CXCL6P80162 114 aa8.19□□□□□ -1.1
HDAC4-208ENST00000463007 KLKP1Q107X0 134 aa8.19□□□□□ -1.1
HDAC4-208ENST00000463007 NKAPP1Q8N9T2 125 aa8.19□□□□□ -1.1
HDAC4-208ENST00000463007 PDE6GP18545 87 aa8.18□□□□□ -1.1
HDAC4-208ENST00000463007 Q6ZTC4 211 aa8.18□□□□□ -1.1
HDAC4-208ENST00000463007 FP248Q71RG6 208 aaPredicted RBP8.18□□□□□ -1.1
HDAC4-208ENST00000463007 H3BNG1 76 aa8.18□□□□□ -1.1
HDAC4-208ENST00000463007 OXLD1Q5BKU9 147 aa8.18□□□□□ -1.1
HDAC4-208ENST00000463007 M0R378 163 aa8.17□□□□□ -1.1
HDAC4-208ENST00000463007 DEFB116Q30KQ4 102 aa8.17□□□□□ -1.1
HDAC4-208ENST00000463007 KRTAP24-1Q3LI83 254 aa8.17□□□□□ -1.1
HDAC4-208ENST00000463007 FAM229BQ4G0N7 80 aa8.17□□□□□ -1.1
HDAC4-208ENST00000463007 C1orf195Q5TG92 126 aa8.16□□□□□ -1.1
HDAC4-208ENST00000463007 FAM168BA1KXE4 195 aa8.16□□□□□ -1.1
HDAC4-208ENST00000463007 SERTAD4-AS1Q5TG53 156 aa8.16□□□□□ -1.1
HDAC4-208ENST00000463007 TENM2Q9NT68 2774 aa8.15□□□□□ -1.1
HDAC4-208ENST00000463007 KRTAP26-1Q6PEX3 210 aa8.15□□□□□ -1.1
HDAC4-208ENST00000463007 LINC00528Q8N1L1 170 aa8.15□□□□□ -1.11
HDAC4-208ENST00000463007 ST20-AS1Q8NBB2 130 aa8.15□□□□□ -1.11
HDAC4-208ENST00000463007 C15orf56Q8N910 161 aa8.14□□□□□ -1.11
HDAC4-208ENST00000463007 COL7A1Q02388 2944 aa8.14□□□□□ -1.11
HDAC4-208ENST00000463007 IGKV4-1P06312 121 aa8.14□□□□□ -1.11
HDAC4-208ENST00000463007 ESRGQ1W209 222 aa8.14□□□□□ -1.11
HDAC4-208ENST00000463007 SMIM29Q86T20 159 aa8.14□□□□□ -1.11
HDAC4-208ENST00000463007 GVQW2A0A096LPI5 108 aaPredicted RBP8.13□□□□□ -1.11
HDAC4-208ENST00000463007 SMIM26A0A096LP01 95 aa8.12□□□□□ -1.11
HDAC4-208ENST00000463007 SYCNQ0VAF6 134 aa8.12□□□□□ -1.11
HDAC4-208ENST00000463007 HUWE1Q7Z6Z7 4374 aaKnown RBP8.11□□□□□ -1.11
HDAC4-208ENST00000463007 Q8N377 158 aa8.11□□□□□ -1.11
HDAC4-208ENST00000463007 C7orf33Q8WU49 177 aa8.11□□□□□ -1.11
HDAC4-208ENST00000463007 FUSP35637 526 aaKnown RBP eCLIP8.11□□□□□ -1.11
HDAC4-208ENST00000463007 PRYO14603 147 aa8.1□□□□□ -1.11
HDAC4-208ENST00000463007 UBE2BP63146 152 aa8.1□□□□□ -1.11
HDAC4-208ENST00000463007 CASC10Q5T4H9 136 aa8.08□□□□□ -1.12
HDAC4-208ENST00000463007 ETDCA0A1B0GVM5 59 aa8.08□□□□□ -1.12
HDAC4-208ENST00000463007 C1orf137Q5JT78 98 aa8.07□□□□□ -1.12
HDAC4-208ENST00000463007 EPM2AB3EWF7 344 aa8.06□□□□□ -1.12
HDAC4-208ENST00000463007 ERC2-IT1O76042 136 aa8.06□□□□□ -1.12
HDAC4-208ENST00000463007 OCR1Q9BZK8 76 aa8.06□□□□□ -1.12
HDAC4-208ENST00000463007 A0A1W2PNM2 257 aa8.06□□□□□ -1.12
HDAC4-208ENST00000463007 DEFB131BA0A096LNP1 70 aa8.05□□□□□ -1.12
HDAC4-208ENST00000463007 WFDC13Q8IUB5 93 aa8.05□□□□□ -1.12
HDAC4-208ENST00000463007 H3BQ85 93 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 NDUFC1O43677 76 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 Q9BRP9 147 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 IGKV2-24A0A0C4DH68 120 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 BCE1O60756 84 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 STAB2Q8WWQ8 2551 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 K7EQZ3 153 aa8.04□□□□□ -1.12
HDAC4-208ENST00000463007 A0A096LNI7 61 aa8.03□□□□□ -1.12
HDAC4-208ENST00000463007 LINC01556Q5JQF7 62 aa8.03□□□□□ -1.12
HDAC4-208ENST00000463007 PSPHP1O15172 72 aa8.02□□□□□ -1.13
HDAC4-208ENST00000463007 DYNC2H1Q8NCM8 4307 aaKnown RBP8□□□□□ -1.13
HDAC4-208ENST00000463007 RPL37AP61513 92 aaKnown RBP8□□□□□ -1.13
HDAC4-208ENST00000463007 PRLHP81277 87 aa8□□□□□ -1.13
HDAC4-208ENST00000463007 Q6ZRX8 168 aa8□□□□□ -1.13
HDAC4-208ENST00000463007 C11orf45Q8TAV5 145 aa7.99□□□□□ -1.13
HDAC4-208ENST00000463007 KCNQ1DNQ9H478 68 aa7.99□□□□□ -1.13
HDAC4-208ENST00000463007 DNAH10OSP0CZ25 163 aa7.99□□□□□ -1.13
HDAC4-208ENST00000463007 LYSTQ99698 3801 aa7.98□□□□□ -1.13
HDAC4-208ENST00000463007 DSCR10P59022 87 aa7.96□□□□□ -1.14
HDAC4-208ENST00000463007 C1orf64Q8NEQ6 169 aa7.95□□□□□ -1.14
HDAC4-208ENST00000463007 DNAH9Q9NYC9 4486 aa7.95□□□□□ -1.14
HDAC4-208ENST00000463007 IGLV5-48A0A075B6I7 105 aa7.95□□□□□ -1.14
HDAC4-208ENST00000463007 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.95□□□□□ -1.14
HDAC4-208ENST00000463007 A0A087WSZ3 146 aa7.95□□□□□ -1.14
HDAC4-208ENST00000463007 Q8NBF4 154 aa7.95□□□□□ -1.14
HDAC4-208ENST00000463007 DHRS4-AS1Q9P1J3 65 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms