RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 FAM240AA0A1B0GVK7 77 aa6.1□□□□□ -1.43
HMGB4-201ENST00000425537 LRCOL1A6NCL2 159 aa6.1□□□□□ -1.43
HMGB4-201ENST00000425537 Q6ZRN7 208 aaPredicted RBP6.1□□□□□ -1.43
HMGB4-201ENST00000425537 MRPL55Q7Z7F7 128 aaKnown RBP6.1□□□□□ -1.43
HMGB4-201ENST00000425537 C9orf163Q8N9P6 203 aa6.1□□□□□ -1.43
HMGB4-201ENST00000425537 ALMS1Q8TCU4 4167 aa6.09□□□□□ -1.43
HMGB4-201ENST00000425537 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.09□□□□□ -1.43
HMGB4-201ENST00000425537 SERTAD4-AS1Q5TG53 156 aa6.09□□□□□ -1.43
HMGB4-201ENST00000425537 Q6ZR54 194 aa6.09□□□□□ -1.43
HMGB4-201ENST00000425537 DHRS4-AS1Q9P1J3 65 aa6.09□□□□□ -1.43
HMGB4-201ENST00000425537 C22orf24Q9Y442 160 aa6.09□□□□□ -1.43
HMGB4-201ENST00000425537 DYNC2H1Q8NCM8 4307 aaKnown RBP6.08□□□□□ -1.44
HMGB4-201ENST00000425537 IGLV1-50A0A075B6I6 118 aa6.08□□□□□ -1.44
HMGB4-201ENST00000425537 ETDCA0A1B0GVM5 59 aa6.08□□□□□ -1.44
HMGB4-201ENST00000425537 M0R2N4 97 aa6.08□□□□□ -1.44
HMGB4-201ENST00000425537 C1orf134Q5TEV5 83 aa6.08□□□□□ -1.44
HMGB4-201ENST00000425537 FAM19A5Q7Z5A7 132 aaPredicted RBP6.08□□□□□ -1.44
HMGB4-201ENST00000425537 A0A096LNI7 61 aa6.07□□□□□ -1.44
HMGB4-201ENST00000425537 SIGMAR1Q99720 223 aa6.07□□□□□ -1.44
HMGB4-201ENST00000425537 A0A087WTM6 91 aa6.06□□□□□ -1.44
HMGB4-201ENST00000425537 PDE6GP18545 87 aa6.06□□□□□ -1.44
HMGB4-201ENST00000425537 Q6ZQY7 126 aa6.06□□□□□ -1.44
HMGB4-201ENST00000425537 OBSCN-AS1Q96MR7 158 aa6.06□□□□□ -1.44
HMGB4-201ENST00000425537 PLECQ15149 4684 aaKnown RBP6.05□□□□□ -1.44
HMGB4-201ENST00000425537 IGKV2-24A0A0C4DH68 120 aa6.05□□□□□ -1.44
HMGB4-201ENST00000425537 REG3GQ6UW15 175 aa6.05□□□□□ -1.44
HMGB4-201ENST00000425537 LAMTOR3Q9UHA4 124 aa6.05□□□□□ -1.44
HMGB4-201ENST00000425537 FAM168BA1KXE4 195 aa6.04□□□□□ -1.44
HMGB4-201ENST00000425537 SPRR1AP35321 89 aa6.04□□□□□ -1.44
HMGB4-201ENST00000425537 Q6ZRX8 168 aa6.04□□□□□ -1.44
HMGB4-201ENST00000425537 RPL37AP8A6NKH3 93 aa6.03□□□□□ -1.44
HMGB4-201ENST00000425537 RBM3P98179 157 aaKnown RBP6.03□□□□□ -1.44
HMGB4-201ENST00000425537 GAGE2AQ6NT46 116 aa6.03□□□□□ -1.44
HMGB4-201ENST00000425537 SDIM1Q6ZPB5 146 aa6.03□□□□□ -1.44
HMGB4-201ENST00000425537 DPH3Q96FX2 82 aa6.03□□□□□ -1.44
HMGB4-201ENST00000425537 LYSTQ99698 3801 aa6.02□□□□□ -1.45
HMGB4-201ENST00000425537 B5MCH6 92 aa6.02□□□□□ -1.45
HMGB4-201ENST00000425537 UBE2BP63146 152 aa6.02□□□□□ -1.45
HMGB4-201ENST00000425537 C14orf132Q9NPU4 83 aa6.02□□□□□ -1.45
HMGB4-201ENST00000425537 DSCR8Q96T75 97 aa6.01□□□□□ -1.45
HMGB4-201ENST00000425537 CDIP1Q9H305 208 aa6.01□□□□□ -1.45
HMGB4-201ENST00000425537 DNAH1Q9P2D7 4330 aa6□□□□□ -1.45
HMGB4-201ENST00000425537 LOC110117498A0A087WWA1 95 aa6□□□□□ -1.45
HMGB4-201ENST00000425537 KRTAP4-16G5E9R7 235 aaPredicted RBP6□□□□□ -1.45
HMGB4-201ENST00000425537 RTL8CO15255 209 aa6□□□□□ -1.45
HMGB4-201ENST00000425537 CCKP06307 115 aa6□□□□□ -1.45
HMGB4-201ENST00000425537 SCGB1A1P11684 91 aa6□□□□□ -1.45
HMGB4-201ENST00000425537 KRTAP7-1Q8IUC3 87 aa6□□□□□ -1.45
HMGB4-201ENST00000425537 KMT2CQ8NEZ4 4911 aaKnown RBP6□□□□□ -1.45
HMGB4-201ENST00000425537 IGLV5-52A0A0A0MRZ9 124 aa5.99□□□□□ -1.45
HMGB4-201ENST00000425537 A0A1W2PNN7 141 aa5.99□□□□□ -1.45
HMGB4-201ENST00000425537 NDUFV3P56181 108 aaKnown RBP5.99□□□□□ -1.45
HMGB4-201ENST00000425537 H0Y9J4 135 aa5.98□□□□□ -1.45
HMGB4-201ENST00000425537 LINC00643Q86TS7 51 aa5.98□□□□□ -1.45
HMGB4-201ENST00000425537 SPACA4Q8TDM5 124 aa5.98□□□□□ -1.45
HMGB4-201ENST00000425537 SACSQ9NZJ4 4579 aa5.98□□□□□ -1.45
HMGB4-201ENST00000425537 RYR2Q92736 4967 aa5.97□□□□□ -1.45
HMGB4-201ENST00000425537 HYDINQ4G0P3 5121 aa5.97□□□□□ -1.45
HMGB4-201ENST00000425537 VPS13DQ5THJ4 4388 aa5.97□□□□□ -1.45
HMGB4-201ENST00000425537 CHTF8P0CG12 524 aa5.97□□□□□ -1.45
HMGB4-201ENST00000425537 FAM19A1Q7Z5A9 133 aa5.97□□□□□ -1.45
HMGB4-201ENST00000425537 EPM2AB3EWF7 344 aa5.96□□□□□ -1.46
HMGB4-201ENST00000425537 XGP55808 180 aa5.96□□□□□ -1.46
HMGB4-201ENST00000425537 IGLV5-48A0A075B6I7 105 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 F8WEM9 126 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 UBE2AP49459 152 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 RYR3Q15413 4870 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 Q6ZQT0 140 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 PHF5AQ7RTV0 110 aaKnown RBP5.95□□□□□ -1.46
HMGB4-201ENST00000425537 Q9BRP9 147 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 UBL5Q9BZL1 73 aa5.95□□□□□ -1.46
HMGB4-201ENST00000425537 TRBV7-4A0A0J9YYF1 115 aa5.94□□□□□ -1.46
HMGB4-201ENST00000425537 A0A1B0GV72 72 aa5.94□□□□□ -1.46
HMGB4-201ENST00000425537 A0A1B0GW54 56 aa5.94□□□□□ -1.46
HMGB4-201ENST00000425537 Q6Q795 121 aa5.94□□□□□ -1.46
HMGB4-201ENST00000425537 DEFB105AQ8NG35 78 aa5.94□□□□□ -1.46
HMGB4-201ENST00000425537 IMUPQ9GZP8 106 aa5.94□□□□□ -1.46
HMGB4-201ENST00000425537 BCE1O60756 84 aa5.93□□□□□ -1.46
HMGB4-201ENST00000425537 MT-ATP8P03928 68 aa5.93□□□□□ -1.46
HMGB4-201ENST00000425537 ATP5EP2Q5VTU8 51 aa5.93□□□□□ -1.46
HMGB4-201ENST00000425537 Q8N377 158 aa5.93□□□□□ -1.46
HMGB4-201ENST00000425537 PLAC8Q9NZF1 115 aa5.93□□□□□ -1.46
HMGB4-201ENST00000425537 FUSP35637 526 aaKnown RBP eCLIP5.92□□□□□ -1.46
HMGB4-201ENST00000425537 SMCR5Q8TEV8 140 aa5.92□□□□□ -1.46
HMGB4-201ENST00000425537 HIGD2AQ9BW72 106 aa5.92□□□□□ -1.46
HMGB4-201ENST00000425537 DNAH6Q9C0G6 4158 aa5.92□□□□□ -1.46
HMGB4-201ENST00000425537 KMT2AQ03164 3969 aa5.92□□□□□ -1.46
HMGB4-201ENST00000425537 TNP2Q05952 138 aa5.91□□□□□ -1.46
HMGB4-201ENST00000425537 Q6JHZ5 121 aa5.91□□□□□ -1.46
HMGB4-201ENST00000425537 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.91□□□□□ -1.46
HMGB4-201ENST00000425537 TRBV7-7A0A0K0K1E9 115 aa5.9□□□□□ -1.46
HMGB4-201ENST00000425537 PCP4P48539 62 aa5.9□□□□□ -1.46
HMGB4-201ENST00000425537 LINC01547P58512 204 aaPredicted RBP5.9□□□□□ -1.46
HMGB4-201ENST00000425537 PRLHP81277 87 aa5.9□□□□□ -1.46
HMGB4-201ENST00000425537 LINC00846Q9NV44 126 aa5.9□□□□□ -1.46
HMGB4-201ENST00000425537 ZNF706Q9Y5V0 76 aaPredicted RBP5.9□□□□□ -1.46
HMGB4-201ENST00000425537 LOC100996750A0A140TA64 210 aa5.88□□□□□ -1.47
HMGB4-201ENST00000425537 PANO1I0J062 215 aa5.88□□□□□ -1.47
HMGB4-201ENST00000425537 ERC2-IT1O76042 136 aa5.88□□□□□ -1.47
HMGB4-201ENST00000425537 SPRR1BP22528 89 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms