RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TRBV7-6A0A0J9YX20 115 aa13.59□□□□□ -0.23
CLK3-202ENST00000395066 EGFEM1PQ0D2K5 195 aa13.58□□□□□ -0.24
CLK3-202ENST00000395066 TM2D3Q9BRN9 247 aa13.58□□□□□ -0.24
CLK3-202ENST00000395066 F8WEM9 126 aa13.57□□□□□ -0.24
CLK3-202ENST00000395066 NOTCH1P46531 2555 aa13.56□□□□□ -0.24
CLK3-202ENST00000395066 C1orf43Q9BWL3 253 aa13.56□□□□□ -0.24
CLK3-202ENST00000395066 M0R378 163 aa13.55□□□□□ -0.24
CLK3-202ENST00000395066 MAST4O15021 2626 aa13.55□□□□□ -0.24
CLK3-202ENST00000395066 F8P00451 2351 aa13.55□□□□□ -0.24
CLK3-202ENST00000395066 FBN1P35555 2871 aaKnown RBP13.53□□□□□ -0.24
CLK3-202ENST00000395066 LINC00528Q8N1L1 170 aa13.53□□□□□ -0.24
CLK3-202ENST00000395066 CMYA5Q8N3K9 4069 aa13.51□□□□□ -0.25
CLK3-202ENST00000395066 H3BNG1 76 aa13.5□□□□□ -0.25
CLK3-202ENST00000395066 NREPQ16612 68 aa13.5□□□□□ -0.25
CLK3-202ENST00000395066 DEFB131BA0A096LNP1 70 aa13.5□□□□□ -0.25
CLK3-202ENST00000395066 NDUFC1O43677 76 aa13.5□□□□□ -0.25
CLK3-202ENST00000395066 SERTAD4-AS1Q5TG53 156 aa13.5□□□□□ -0.25
CLK3-202ENST00000395066 BPY2O14599 106 aa13.49□□□□□ -0.25
CLK3-202ENST00000395066 DEFB105AQ8NG35 78 aa13.49□□□□□ -0.25
CLK3-202ENST00000395066 SYCNQ0VAF6 134 aa13.47□□□□□ -0.25
CLK3-202ENST00000395066 Q8N9L7 120 aa13.47□□□□□ -0.25
CLK3-202ENST00000395066 LINC01556Q5JQF7 62 aa13.45□□□□□ -0.26
CLK3-202ENST00000395066 CASC10Q5T4H9 136 aa13.44□□□□□ -0.26
CLK3-202ENST00000395066 C11orf45Q8TAV5 145 aa13.44□□□□□ -0.26
CLK3-202ENST00000395066 RPL37AP8A6NKH3 93 aa13.44□□□□□ -0.26
CLK3-202ENST00000395066 TMEM254Q8TBM7 123 aa13.44□□□□□ -0.26
CLK3-202ENST00000395066 FAM168BA1KXE4 195 aa13.43□□□□□ -0.26
CLK3-202ENST00000395066 IGKV4-1P06312 121 aa13.43□□□□□ -0.26
CLK3-202ENST00000395066 C7orf33Q8WU49 177 aa13.43□□□□□ -0.26
CLK3-202ENST00000395066 NKAPP1Q8N9T2 125 aa13.43□□□□□ -0.26
CLK3-202ENST00000395066 SMIM26A0A096LP01 95 aa13.43□□□□□ -0.26
CLK3-202ENST00000395066 BAHCC1Q9P281 2608 aa13.42□□□□□ -0.26
CLK3-202ENST00000395066 C3orf84H3BNL1 204 aa13.42□□□□□ -0.26
CLK3-202ENST00000395066 ERC2-IT1O76042 136 aa13.42□□□□□ -0.26
CLK3-202ENST00000395066 PRB2P02812 416 aaPredicted RBP13.41□□□□□ -0.26
CLK3-202ENST00000395066 ATP5EP56381 51 aaPredicted RBP13.41□□□□□ -0.26
CLK3-202ENST00000395066 FP248Q71RG6 208 aaPredicted RBP13.41□□□□□ -0.26
CLK3-202ENST00000395066 KRTAP24-1Q3LI83 254 aa13.38□□□□□ -0.27
CLK3-202ENST00000395066 Q8N377 158 aa13.37□□□□□ -0.27
CLK3-202ENST00000395066 OCR1Q9BZK8 76 aa13.37□□□□□ -0.27
CLK3-202ENST00000395066 KCNQ1DNQ9H478 68 aa13.37□□□□□ -0.27
CLK3-202ENST00000395066 LINC00336Q6ZUF6 198 aa13.35□□□□□ -0.27
CLK3-202ENST00000395066 NBEAL1Q6ZS30 2694 aa13.34□□□□□ -0.27
CLK3-202ENST00000395066 MRAPQ8TCY5 172 aa13.33□□□□□ -0.28
CLK3-202ENST00000395066 LINC00588Q9Y4M8 146 aa13.33□□□□□ -0.28
CLK3-202ENST00000395066 DNAH10OSP0CZ25 163 aa13.33□□□□□ -0.28
CLK3-202ENST00000395066 LINC00474Q9P2X8 69 aa13.33□□□□□ -0.28
CLK3-202ENST00000395066 A0A0U1RQV1 116 aa13.32□□□□□ -0.28
CLK3-202ENST00000395066 ST20-AS1Q8NBB2 130 aa13.32□□□□□ -0.28
CLK3-202ENST00000395066 Q9BRP9 147 aa13.32□□□□□ -0.28
CLK3-202ENST00000395066 PRYO14603 147 aa13.32□□□□□ -0.28
CLK3-202ENST00000395066 KRTAP7-1Q8IUC3 87 aa13.32□□□□□ -0.28
CLK3-202ENST00000395066 LYSTQ99698 3801 aa13.32□□□□□ -0.28
CLK3-202ENST00000395066 COL6A5A8TX70 2615 aa13.31□□□□□ -0.28
CLK3-202ENST00000395066 DNAH3Q8TD57 4116 aa13.31□□□□□ -0.28
CLK3-202ENST00000395066 DNAH1Q9P2D7 4330 aa13.31□□□□□ -0.28
CLK3-202ENST00000395066 IGLV5-48A0A075B6I7 105 aa13.3□□□□□ -0.28
CLK3-202ENST00000395066 PRO0628Q9UI54 55 aa13.29□□□□□ -0.28
CLK3-202ENST00000395066 F8WDY8 70 aa13.28□□□□□ -0.28
CLK3-202ENST00000395066 Q6ZRX8 168 aa13.27□□□□□ -0.28
CLK3-202ENST00000395066 FUSP35637 526 aaKnown RBP eCLIP13.26□□□□□ -0.29
CLK3-202ENST00000395066 DNAH10Q8IVF4 4471 aa13.26□□□□□ -0.29
CLK3-202ENST00000395066 IGLV1-50A0A075B6I6 118 aa13.25□□□□□ -0.29
CLK3-202ENST00000395066 KRTAP4-16G5E9R7 235 aaPredicted RBP13.25□□□□□ -0.29
CLK3-202ENST00000395066 HIGD2AQ9BW72 106 aa13.25□□□□□ -0.29
CLK3-202ENST00000395066 ETDCA0A1B0GVM5 59 aa13.24□□□□□ -0.29
CLK3-202ENST00000395066 DHRS4-AS1Q9P1J3 65 aa13.24□□□□□ -0.29
CLK3-202ENST00000395066 A0A1W2PNM2 257 aa13.23□□□□□ -0.29
CLK3-202ENST00000395066 TLX1NBP0CAT3 122 aa13.23□□□□□ -0.29
CLK3-202ENST00000395066 FAM229BQ4G0N7 80 aa13.23□□□□□ -0.29
CLK3-202ENST00000395066 HUWE1Q7Z6Z7 4374 aaKnown RBP13.22□□□□□ -0.29
CLK3-202ENST00000395066 SMIM29Q86T20 159 aa13.22□□□□□ -0.29
CLK3-202ENST00000395066 A0A1B0GW54 56 aa13.22□□□□□ -0.29
CLK3-202ENST00000395066 CSMD3Q7Z407 3707 aa13.2□□□□□ -0.3
CLK3-202ENST00000395066 A0A0G2JQZ4 141 aa13.2□□□□□ -0.3
CLK3-202ENST00000395066 A0A1W2PNN7 141 aa13.2□□□□□ -0.3
CLK3-202ENST00000395066 FAM30AQ9NZY2 134 aa13.2□□□□□ -0.3
CLK3-202ENST00000395066 C1orf137Q5JT78 98 aa13.19□□□□□ -0.3
CLK3-202ENST00000395066 TNP2Q05952 138 aa13.18□□□□□ -0.3
CLK3-202ENST00000395066 UBE2BP63146 152 aa13.18□□□□□ -0.3
CLK3-202ENST00000395066 MRPL55Q7Z7F7 128 aaKnown RBP13.18□□□□□ -0.3
CLK3-202ENST00000395066 PLA2G2DQ9UNK4 145 aa13.18□□□□□ -0.3
CLK3-202ENST00000395066 SPRR1AP35321 89 aa13.17□□□□□ -0.3
CLK3-202ENST00000395066 Q8NBF4 154 aa13.16□□□□□ -0.3
CLK3-202ENST00000395066 MPLKIPQ8TAP9 179 aa13.16□□□□□ -0.3
CLK3-202ENST00000395066 IGLV5-37A0A075B6J1 123 aa13.14□□□□□ -0.31
CLK3-202ENST00000395066 LCE6AA0A183 80 aa13.12□□□□□ -0.31
CLK3-202ENST00000395066 SPRR4Q96PI1 79 aa13.12□□□□□ -0.31
CLK3-202ENST00000395066 IGKV2-24A0A0C4DH68 120 aa13.12□□□□□ -0.31
CLK3-202ENST00000395066 STAB2Q8WWQ8 2551 aa13.11□□□□□ -0.31
CLK3-202ENST00000395066 MGAM2Q2M2H8 2515 aa13.11□□□□□ -0.31
CLK3-202ENST00000395066 SRRM2Q9UQ35 2752 aaKnown RBP13.11□□□□□ -0.31
CLK3-202ENST00000395066 DSCR10P59022 87 aa13.1□□□□□ -0.31
CLK3-202ENST00000395066 DNAH9Q9NYC9 4486 aa13.1□□□□□ -0.31
CLK3-202ENST00000395066 BRK1Q8WUW1 75 aa13.09□□□□□ -0.31
CLK3-202ENST00000395066 KRTAP1-5Q9BYS1 174 aa13.09□□□□□ -0.31
CLK3-202ENST00000395066 COL7A1Q02388 2944 aa13.08□□□□□ -0.31
CLK3-202ENST00000395066 PRLHP81277 87 aa13.08□□□□□ -0.32
CLK3-202ENST00000395066 REG3GQ6UW15 175 aa13.08□□□□□ -0.32
CLK3-202ENST00000395066 K7EIL1 84 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms