RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 TM2D3Q9BRN9 247 aa6.55□□□□□ -1.36
COL17A1-203ENST00000393211 IGLV5-37A0A075B6J1 123 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 F8WEM9 126 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 IGKV4-1P06312 121 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 SCXQ7RTU7 201 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 RMI2Q96E14 147 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 CUBNO60494 3623 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 PRYO14603 147 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 TMEM254Q8TBM7 123 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 SNURFQ9Y675 71 aa6.54□□□□□ -1.36
COL17A1-203ENST00000393211 NOTCH2Q04721 2471 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 NBEAL2Q6ZNJ1 2754 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 IGKV2D-24A0A075B6R9 120 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 SMIM26A0A096LP01 95 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 C4orf26Q17RF5 130 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 Q6ZTC4 211 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 Q8N377 158 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 C7orf33Q8WU49 177 aa6.53□□□□□ -1.36
COL17A1-203ENST00000393211 DNAH10OSP0CZ25 163 aa6.52□□□□□ -1.37
COL17A1-203ENST00000393211 FUSP35637 526 aaKnown RBP eCLIP6.52□□□□□ -1.37
COL17A1-203ENST00000393211 OCR1Q9BZK8 76 aa6.52□□□□□ -1.37
COL17A1-203ENST00000393211 Q6ZRX8 168 aa6.51□□□□□ -1.37
COL17A1-203ENST00000393211 SPRR1AP35321 89 aa6.5□□□□□ -1.37
COL17A1-203ENST00000393211 DEFB131BA0A096LNP1 70 aa6.5□□□□□ -1.37
COL17A1-203ENST00000393211 A0A0U1RQV1 116 aa6.5□□□□□ -1.37
COL17A1-203ENST00000393211 KRTAP4-16G5E9R7 235 aaPredicted RBP6.5□□□□□ -1.37
COL17A1-203ENST00000393211 SERTAD4-AS1Q5TG53 156 aa6.5□□□□□ -1.37
COL17A1-203ENST00000393211 HRCT1Q6UXD1 115 aa6.5□□□□□ -1.37
COL17A1-203ENST00000393211 IGLV1-50A0A075B6I6 118 aa6.49□□□□□ -1.37
COL17A1-203ENST00000393211 TNP2Q05952 138 aa6.49□□□□□ -1.37
COL17A1-203ENST00000393211 MRAPQ8TCY5 172 aa6.49□□□□□ -1.37
COL17A1-203ENST00000393211 RETNQ9HD89 108 aa6.48□□□□□ -1.37
COL17A1-203ENST00000393211 ETDCA0A1B0GVM5 59 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 Q8NBF4 154 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 DEFB105AQ8NG35 78 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 C11orf45Q8TAV5 145 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 SPRR4Q96PI1 79 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 OTOGQ6ZRI0 2925 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 C3orf84H3BNL1 204 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 KRTAP10-11P60412 298 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 C1orf137Q5JT78 98 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 Q8N9L7 120 aa6.47□□□□□ -1.37
COL17A1-203ENST00000393211 LCE6AA0A183 80 aa6.46□□□□□ -1.38
COL17A1-203ENST00000393211 A0A1W2PNM2 257 aa6.46□□□□□ -1.38
COL17A1-203ENST00000393211 Q9BRP9 147 aa6.46□□□□□ -1.38
COL17A1-203ENST00000393211 VWFP04275 2813 aa6.45□□□□□ -1.38
COL17A1-203ENST00000393211 OXLD1Q5BKU9 147 aa6.44□□□□□ -1.38
COL17A1-203ENST00000393211 FP248Q71RG6 208 aaPredicted RBP6.44□□□□□ -1.38
COL17A1-203ENST00000393211 MAST4O15021 2626 aa6.43□□□□□ -1.38
COL17A1-203ENST00000393211 MRPL55Q7Z7F7 128 aaKnown RBP6.43□□□□□ -1.38
COL17A1-203ENST00000393211 RPL37AP8A6NKH3 93 aa6.42□□□□□ -1.38
COL17A1-203ENST00000393211 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
COL17A1-203ENST00000393211 TEP1Q99973 2627 aaKnown RBP6.41□□□□□ -1.38
COL17A1-203ENST00000393211 HIVEP1P15822 2718 aa6.41□□□□□ -1.38
COL17A1-203ENST00000393211 SMIM29Q86T20 159 aa6.4□□□□□ -1.38
COL17A1-203ENST00000393211 LINC00588Q9Y4M8 146 aa6.4□□□□□ -1.38
COL17A1-203ENST00000393211 FAM168BA1KXE4 195 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 REG3GQ6UW15 175 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 KRTAP7-1Q8IUC3 87 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 HIGD2AQ9BW72 106 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 F8P00451 2351 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 NSD1Q96L73 2696 aaPredicted RBP6.39□□□□□ -1.39
COL17A1-203ENST00000393211 DSCR10P59022 87 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 UBE2BP63146 152 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 ST20-AS1Q8NBB2 130 aa6.39□□□□□ -1.39
COL17A1-203ENST00000393211 IGLV8-61A0A075B6I0 122 aa6.38□□□□□ -1.39
COL17A1-203ENST00000393211 LINC00336Q6ZUF6 198 aa6.37□□□□□ -1.39
COL17A1-203ENST00000393211 ZCCHC13Q8WW36 166 aaKnown RBP6.37□□□□□ -1.39
COL17A1-203ENST00000393211 FAM30AQ9NZY2 134 aa6.37□□□□□ -1.39
COL17A1-203ENST00000393211 TENM1Q9UKZ4 2725 aa6.37□□□□□ -1.39
COL17A1-203ENST00000393211 LINC00474Q9P2X8 69 aa6.36□□□□□ -1.39
COL17A1-203ENST00000393211 HCG22E2RYF7 251 aa6.36□□□□□ -1.39
COL17A1-203ENST00000393211 CASC10Q5T4H9 136 aa6.36□□□□□ -1.39
COL17A1-203ENST00000393211 LINC00476Q8WZB0 136 aa6.36□□□□□ -1.39
COL17A1-203ENST00000393211 K7EQZ3 153 aa6.34□□□□□ -1.39
COL17A1-203ENST00000393211 hDV103S1A0JD37 113 aa6.33□□□□□ -1.4
COL17A1-203ENST00000393211 C16orf90A8MZG2 172 aa6.33□□□□□ -1.4
COL17A1-203ENST00000393211 NDUFB1O75438 58 aa6.33□□□□□ -1.4
COL17A1-203ENST00000393211 IGFL1Q6UW32 110 aa6.33□□□□□ -1.4
COL17A1-203ENST00000393211 ATRQ13535 2644 aa6.33□□□□□ -1.4
COL17A1-203ENST00000393211 PSCAO43653 123 aa6.32□□□□□ -1.4
COL17A1-203ENST00000393211 CNBPP62633 177 aaKnown RBP6.32□□□□□ -1.4
COL17A1-203ENST00000393211 CYP4F30PQ9H0H9 118 aa6.32□□□□□ -1.4
COL17A1-203ENST00000393211 FAM229BQ4G0N7 80 aa6.32□□□□□ -1.4
COL17A1-203ENST00000393211 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.31□□□□□ -1.4
COL17A1-203ENST00000393211 H0Y9J4 135 aa6.31□□□□□ -1.4
COL17A1-203ENST00000393211 SPRR1BP22528 89 aa6.3□□□□□ -1.4
COL17A1-203ENST00000393211 H3BPC8 53 aa6.29□□□□□ -1.4
COL17A1-203ENST00000393211 KRTAP24-1Q3LI83 254 aa6.29□□□□□ -1.4
COL17A1-203ENST00000393211 PKIGQ9Y2B9 76 aa6.29□□□□□ -1.4
COL17A1-203ENST00000393211 MP68P56378 58 aa6.28□□□□□ -1.4
COL17A1-203ENST00000393211 Q1T7F1 81 aa6.28□□□□□ -1.4
COL17A1-203ENST00000393211 C14orf177Q52M58 125 aa6.28□□□□□ -1.4
COL17A1-203ENST00000393211 A0A096LNI7 61 aa6.28□□□□□ -1.4
COL17A1-203ENST00000393211 MPLKIPQ8TAP9 179 aa6.28□□□□□ -1.4
COL17A1-203ENST00000393211 KRTAP29-1A8MX34 341 aaPredicted RBP6.27□□□□□ -1.41
COL17A1-203ENST00000393211 UBE2AP49459 152 aa6.27□□□□□ -1.41
COL17A1-203ENST00000393211 C1orf64Q8NEQ6 169 aa6.27□□□□□ -1.41
COL17A1-203ENST00000393211 A0A087WSZ3 146 aa6.26□□□□□ -1.41
COL17A1-203ENST00000393211 A0A1W2PNN7 141 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms