RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CHTF8P0CG12 524 aa8.54□□□□□ -1.04
HMGB1-202ENST00000339872 VPS25Q9BRG1 176 aa8.54□□□□□ -1.04
HMGB1-202ENST00000339872 IGLV1-50A0A075B6I6 118 aa8.53□□□□□ -1.04
HMGB1-202ENST00000339872 PKIGQ9Y2B9 76 aa8.53□□□□□ -1.04
HMGB1-202ENST00000339872 A0A1W2PNN7 141 aa8.52□□□□□ -1.05
HMGB1-202ENST00000339872 PRYO14603 147 aa8.52□□□□□ -1.05
HMGB1-202ENST00000339872 SDIM1Q6ZPB5 146 aa8.51□□□□□ -1.05
HMGB1-202ENST00000339872 LINC00528Q8N1L1 170 aa8.51□□□□□ -1.05
HMGB1-202ENST00000339872 Q6ZQY7 126 aa8.51□□□□□ -1.05
HMGB1-202ENST00000339872 FUSP35637 526 aaKnown RBP eCLIP8.5□□□□□ -1.05
HMGB1-202ENST00000339872 TMEM256-PLSCR3K7ERE1 68 aa8.49□□□□□ -1.05
HMGB1-202ENST00000339872 RTL8CO15255 209 aa8.48□□□□□ -1.05
HMGB1-202ENST00000339872 A0A1B0GV72 72 aa8.48□□□□□ -1.05
HMGB1-202ENST00000339872 LINC00474Q9P2X8 69 aa8.48□□□□□ -1.05
HMGB1-202ENST00000339872 ALMS1Q8TCU4 4167 aa8.47□□□□□ -1.05
HMGB1-202ENST00000339872 ETDCA0A1B0GVM5 59 aa8.47□□□□□ -1.05
HMGB1-202ENST00000339872 SPRR1AP35321 89 aa8.47□□□□□ -1.05
HMGB1-202ENST00000339872 DNAH2Q9P225 4427 aa8.47□□□□□ -1.05
HMGB1-202ENST00000339872 KRTAP4-16G5E9R7 235 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-202ENST00000339872 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-202ENST00000339872 DNAH6Q9C0G6 4158 aa8.46□□□□□ -1.05
HMGB1-202ENST00000339872 PANO1I0J062 215 aa8.46□□□□□ -1.05
HMGB1-202ENST00000339872 INAFM2P0DMQ5 153 aa8.46□□□□□ -1.05
HMGB1-202ENST00000339872 REG3GQ6UW15 175 aa8.46□□□□□ -1.05
HMGB1-202ENST00000339872 B5MCH6 92 aa8.46□□□□□ -1.06
HMGB1-202ENST00000339872 Q6ZRX8 168 aa8.46□□□□□ -1.06
HMGB1-202ENST00000339872 TNP2Q05952 138 aa8.45□□□□□ -1.06
HMGB1-202ENST00000339872 PHF5AQ7RTV0 110 aaKnown RBP8.45□□□□□ -1.06
HMGB1-202ENST00000339872 DPH3Q96FX2 82 aa8.45□□□□□ -1.06
HMGB1-202ENST00000339872 C14orf132Q9NPU4 83 aa8.45□□□□□ -1.06
HMGB1-202ENST00000339872 OBSCN-AS1Q96MR7 158 aa8.45□□□□□ -1.06
HMGB1-202ENST00000339872 IGLV5-52A0A0A0MRZ9 124 aa8.44□□□□□ -1.06
HMGB1-202ENST00000339872 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-202ENST00000339872 UBE2BP63146 152 aa8.43□□□□□ -1.06
HMGB1-202ENST00000339872 SPACA4Q8TDM5 124 aa8.43□□□□□ -1.06
HMGB1-202ENST00000339872 Q9BRP9 147 aa8.42□□□□□ -1.06
HMGB1-202ENST00000339872 CDIP1Q9H305 208 aa8.42□□□□□ -1.06
HMGB1-202ENST00000339872 DHRS4-AS1Q9P1J3 65 aa8.42□□□□□ -1.06
HMGB1-202ENST00000339872 JMJD7-PLA2G4BH0Y9G9 81 aa8.42□□□□□ -1.06
HMGB1-202ENST00000339872 H3BQ85 93 aa8.42□□□□□ -1.06
HMGB1-202ENST00000339872 LAMTOR3Q9UHA4 124 aa8.42□□□□□ -1.06
HMGB1-202ENST00000339872 GHRHP01286 108 aa8.41□□□□□ -1.06
HMGB1-202ENST00000339872 GAGE2AQ6NT46 116 aa8.4□□□□□ -1.06
HMGB1-202ENST00000339872 KRTAP11-1Q8IUC1 163 aa8.4□□□□□ -1.06
HMGB1-202ENST00000339872 FAM240AA0A1B0GVK7 77 aa8.4□□□□□ -1.07
HMGB1-202ENST00000339872 FAM19A1Q7Z5A9 133 aa8.4□□□□□ -1.07
HMGB1-202ENST00000339872 HECTD4Q9Y4D8 3996 aa8.39□□□□□ -1.07
HMGB1-202ENST00000339872 DNAH17Q9UFH2 4485 aa8.38□□□□□ -1.07
HMGB1-202ENST00000339872 PRLHP81277 87 aa8.38□□□□□ -1.07
HMGB1-202ENST00000339872 DEFB105AQ8NG35 78 aa8.38□□□□□ -1.07
HMGB1-202ENST00000339872 HYDINQ4G0P3 5121 aa8.37□□□□□ -1.07
HMGB1-202ENST00000339872 RBM3P98179 157 aaKnown RBP8.37□□□□□ -1.07
HMGB1-202ENST00000339872 FRAS1Q86XX4 4008 aa8.37□□□□□ -1.07
HMGB1-202ENST00000339872 ERC2-IT1O76042 136 aa8.36□□□□□ -1.07
HMGB1-202ENST00000339872 ACYP1P07311 99 aa8.36□□□□□ -1.07
HMGB1-202ENST00000339872 KRTAP10-2P60368 255 aa8.36□□□□□ -1.07
HMGB1-202ENST00000339872 SMCR5Q8TEV8 140 aa8.36□□□□□ -1.07
HMGB1-202ENST00000339872 EPM2AB3EWF7 344 aa8.35□□□□□ -1.07
HMGB1-202ENST00000339872 XGP55808 180 aa8.35□□□□□ -1.07
HMGB1-202ENST00000339872 NDUFV3P56181 108 aaKnown RBP8.35□□□□□ -1.07
HMGB1-202ENST00000339872 ST20-AS1Q8NBB2 130 aa8.35□□□□□ -1.07
HMGB1-202ENST00000339872 SIGMAR1Q99720 223 aa8.35□□□□□ -1.07
HMGB1-202ENST00000339872 Q8N377 158 aa8.34□□□□□ -1.07
HMGB1-202ENST00000339872 LINC01547P58512 204 aaPredicted RBP8.34□□□□□ -1.08
HMGB1-202ENST00000339872 HIGD2AQ9BW72 106 aa8.34□□□□□ -1.08
HMGB1-202ENST00000339872 CCKP06307 115 aa8.33□□□□□ -1.08
HMGB1-202ENST00000339872 DSCR8Q96T75 97 aa8.33□□□□□ -1.08
HMGB1-202ENST00000339872 PLAC8Q9NZF1 115 aa8.32□□□□□ -1.08
HMGB1-202ENST00000339872 MT-ATP8P03928 68 aa8.32□□□□□ -1.08
HMGB1-202ENST00000339872 IGLV5-48A0A075B6I7 105 aa8.31□□□□□ -1.08
HMGB1-202ENST00000339872 UBE2AP49459 152 aa8.31□□□□□ -1.08
HMGB1-202ENST00000339872 Q6ZQT0 140 aa8.31□□□□□ -1.08
HMGB1-202ENST00000339872 LOC110117498A0A087WWA1 95 aa8.31□□□□□ -1.08
HMGB1-202ENST00000339872 C3orf22Q8N5N4 141 aa8.31□□□□□ -1.08
HMGB1-202ENST00000339872 LCE6AA0A183 80 aa8.3□□□□□ -1.08
HMGB1-202ENST00000339872 BCE1O60756 84 aa8.3□□□□□ -1.08
HMGB1-202ENST00000339872 H0Y9J4 135 aa8.3□□□□□ -1.08
HMGB1-202ENST00000339872 TRBV7-4A0A0J9YYF1 115 aa8.29□□□□□ -1.08
HMGB1-202ENST00000339872 LINC00846Q9NV44 126 aa8.28□□□□□ -1.08
HMGB1-202ENST00000339872 PDE6GP18545 87 aa8.28□□□□□ -1.08
HMGB1-202ENST00000339872 FAM30AQ9NZY2 134 aa8.26□□□□□ -1.09
HMGB1-202ENST00000339872 FAT2Q9NYQ8 4349 aa8.25□□□□□ -1.09
HMGB1-202ENST00000339872 DNAH11Q96DT5 4516 aa8.25□□□□□ -1.09
HMGB1-202ENST00000339872 KRTAP13-1Q8IUC0 172 aa8.25□□□□□ -1.09
HMGB1-202ENST00000339872 PSORS1C2Q9UIG4 136 aa8.25□□□□□ -1.09
HMGB1-202ENST00000339872 SACSQ9NZJ4 4579 aa8.25□□□□□ -1.09
HMGB1-202ENST00000339872 KRTAP10-1P60331 282 aa8.24□□□□□ -1.09
HMGB1-202ENST00000339872 DNAH5Q8TE73 4624 aa8.24□□□□□ -1.09
HMGB1-202ENST00000339872 LINC00643Q86TS7 51 aa8.24□□□□□ -1.09
HMGB1-202ENST00000339872 SMIM29Q86T20 159 aa8.23□□□□□ -1.09
HMGB1-202ENST00000339872 CIRBP-AS1Q8TBR5 109 aa8.23□□□□□ -1.09
HMGB1-202ENST00000339872 C1orf137Q5JT78 98 aa8.23□□□□□ -1.09
HMGB1-202ENST00000339872 PKD1P98161 4303 aa8.23□□□□□ -1.09
HMGB1-202ENST00000339872 SCXQ7RTU7 201 aa8.21□□□□□ -1.09
HMGB1-202ENST00000339872 DNAH8Q96JB1 4490 aa8.21□□□□□ -1.09
HMGB1-202ENST00000339872 F8WEM9 126 aa8.21□□□□□ -1.1
HMGB1-202ENST00000339872 Q6ZSA8 131 aa8.21□□□□□ -1.1
HMGB1-202ENST00000339872 HAMPP81172 84 aa8.2□□□□□ -1.1
HMGB1-202ENST00000339872 C21orf62-AS1Q17RA5 79 aa8.19□□□□□ -1.1
HMGB1-202ENST00000339872 LINC00336Q6ZUF6 198 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms