RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 KMT2AQ03164 3969 aa6.55□□□□□ -1.36
HMGB3-201ENST00000325307 LCE6AA0A183 80 aa6.55□□□□□ -1.36
HMGB3-201ENST00000325307 LRCOL1A6NCL2 159 aa6.55□□□□□ -1.36
HMGB3-201ENST00000325307 SERP1Q9Y6X1 66 aa6.55□□□□□ -1.36
HMGB3-201ENST00000325307 SLPIP03973 132 aa6.54□□□□□ -1.36
HMGB3-201ENST00000325307 COX17Q14061 63 aa6.54□□□□□ -1.36
HMGB3-201ENST00000325307 ALMS1Q8TCU4 4167 aa6.53□□□□□ -1.36
HMGB3-201ENST00000325307 A0A087WTM6 91 aa6.53□□□□□ -1.36
HMGB3-201ENST00000325307 Q1RN00 199 aa6.53□□□□□ -1.36
HMGB3-201ENST00000325307 COPS9Q8WXC6 57 aa6.53□□□□□ -1.36
HMGB3-201ENST00000325307 RPL18AQ02543 176 aaKnown RBP6.53□□□□□ -1.36
HMGB3-201ENST00000325307 IGKV2-28A0A075B6P5 120 aa6.53□□□□□ -1.36
HMGB3-201ENST00000325307 IGKV2D-28P01615 120 aa6.53□□□□□ -1.36
HMGB3-201ENST00000325307 COX6CP09669 75 aa6.52□□□□□ -1.37
HMGB3-201ENST00000325307 CLEC2BQ92478 149 aa6.52□□□□□ -1.37
HMGB3-201ENST00000325307 Q8N814 137 aa6.52□□□□□ -1.37
HMGB3-201ENST00000325307 PRR15Q8IV56 129 aa6.52□□□□□ -1.37
HMGB3-201ENST00000325307 XAGE1AQ9HD64 81 aa6.52□□□□□ -1.37
HMGB3-201ENST00000325307 SMIM26A0A096LP01 95 aa6.51□□□□□ -1.37
HMGB3-201ENST00000325307 SERP2Q8N6R1 65 aa6.51□□□□□ -1.37
HMGB3-201ENST00000325307 SND1-IT1Q9HBX3 110 aa6.51□□□□□ -1.37
HMGB3-201ENST00000325307 TNP2Q05952 138 aa6.51□□□□□ -1.37
HMGB3-201ENST00000325307 LINC00337Q8N6G1 96 aa6.51□□□□□ -1.37
HMGB3-201ENST00000325307 DNAH10Q8IVF4 4471 aa6.51□□□□□ -1.37
HMGB3-201ENST00000325307 CNBPP62633 177 aaKnown RBP6.51□□□□□ -1.37
HMGB3-201ENST00000325307 RTL8CO15255 209 aa6.5□□□□□ -1.37
HMGB3-201ENST00000325307 Q6ZRP5 223 aa6.49□□□□□ -1.37
HMGB3-201ENST00000325307 FUSP35637 526 aaKnown RBP eCLIP6.49□□□□□ -1.37
HMGB3-201ENST00000325307 OBSCN-AS1Q96MR7 158 aa6.48□□□□□ -1.37
HMGB3-201ENST00000325307 H3BS24 57 aa6.48□□□□□ -1.37
HMGB3-201ENST00000325307 IGKV2-24A0A0C4DH68 120 aa6.47□□□□□ -1.37
HMGB3-201ENST00000325307 FAM218AQ96MZ4 157 aa6.47□□□□□ -1.37
HMGB3-201ENST00000325307 Q8NDZ9 215 aa6.47□□□□□ -1.37
HMGB3-201ENST00000325307 IGLV5-52A0A0A0MRZ9 124 aa6.46□□□□□ -1.37
HMGB3-201ENST00000325307 TLX1NBP0CAT3 122 aa6.46□□□□□ -1.37
HMGB3-201ENST00000325307 C9orf163Q8N9P6 203 aa6.46□□□□□ -1.37
HMGB3-201ENST00000325307 DNAH6Q9C0G6 4158 aa6.46□□□□□ -1.38
HMGB3-201ENST00000325307 PRR3P79522 188 aaKnown RBP6.46□□□□□ -1.38
HMGB3-201ENST00000325307 NCR3O14931 201 aa6.45□□□□□ -1.38
HMGB3-201ENST00000325307 Q6JHZ5 121 aa6.45□□□□□ -1.38
HMGB3-201ENST00000325307 HYDINQ4G0P3 5121 aa6.45□□□□□ -1.38
HMGB3-201ENST00000325307 A0A096LNI7 61 aa6.44□□□□□ -1.38
HMGB3-201ENST00000325307 C9orf129Q5T035 196 aaKnown RBP6.44□□□□□ -1.38
HMGB3-201ENST00000325307 INAFM2P0DMQ5 153 aa6.44□□□□□ -1.38
HMGB3-201ENST00000325307 RPL28P46779 137 aaKnown RBP6.44□□□□□ -1.38
HMGB3-201ENST00000325307 TRBV7-6A0A0J9YX20 115 aa6.43□□□□□ -1.38
HMGB3-201ENST00000325307 SMIM11BQ8TCY0 68 aa6.43□□□□□ -1.38
HMGB3-201ENST00000325307 TRAV13-2A0A0B4J235 113 aa6.43□□□□□ -1.38
HMGB3-201ENST00000325307 C16orf90A8MZG2 172 aa6.43□□□□□ -1.38
HMGB3-201ENST00000325307 CHTF8P0CG12 524 aa6.43□□□□□ -1.38
HMGB3-201ENST00000325307 MRPL55Q7Z7F7 128 aaKnown RBP6.43□□□□□ -1.38
HMGB3-201ENST00000325307 NKAPP1Q8N9T2 125 aa6.43□□□□□ -1.38
HMGB3-201ENST00000325307 S100A7L2Q5SY68 101 aa6.42□□□□□ -1.38
HMGB3-201ENST00000325307 RBM12B-AS1Q9P1G2 102 aa6.42□□□□□ -1.38
HMGB3-201ENST00000325307 FAM168BA1KXE4 195 aa6.42□□□□□ -1.38
HMGB3-201ENST00000325307 KRTAP10-2P60368 255 aa6.42□□□□□ -1.38
HMGB3-201ENST00000325307 DNAH2Q9P225 4427 aa6.42□□□□□ -1.38
HMGB3-201ENST00000325307 LINC00474Q9P2X8 69 aa6.41□□□□□ -1.38
HMGB3-201ENST00000325307 SERTAD4-AS1Q5TG53 156 aa6.41□□□□□ -1.38
HMGB3-201ENST00000325307 VPREB1P12018 145 aa6.41□□□□□ -1.38
HMGB3-201ENST00000325307 A0A087WYN8 130 aa6.4□□□□□ -1.38
HMGB3-201ENST00000325307 BAALC-AS2P0C853 105 aa6.4□□□□□ -1.38
HMGB3-201ENST00000325307 SACSQ9NZJ4 4579 aa6.4□□□□□ -1.39
HMGB3-201ENST00000325307 H7BZZ5 65 aa6.39□□□□□ -1.39
HMGB3-201ENST00000325307 M0R378 163 aa6.38□□□□□ -1.39
HMGB3-201ENST00000325307 LAMTOR3Q9UHA4 124 aa6.38□□□□□ -1.39
HMGB3-201ENST00000325307 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-201ENST00000325307 FRAS1Q86XX4 4008 aa6.37□□□□□ -1.39
HMGB3-201ENST00000325307 PANO1I0J062 215 aa6.37□□□□□ -1.39
HMGB3-201ENST00000325307 PLA2G2DQ9UNK4 145 aa6.37□□□□□ -1.39
HMGB3-201ENST00000325307 KMT2CQ8NEZ4 4911 aaKnown RBP6.37□□□□□ -1.39
HMGB3-201ENST00000325307 TRBV10-3A0A0K0K1G6 114 aa6.37□□□□□ -1.39
HMGB3-201ENST00000325307 A0A1W2PNN7 141 aa6.37□□□□□ -1.39
HMGB3-201ENST00000325307 CCKP06307 115 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 PRR26Q8N8Z3 221 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 C7orf33Q8WU49 177 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 RPL37AP8A6NKH3 93 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 DNAH17Q9UFH2 4485 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 SPACA4Q8TDM5 124 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 LINC00846Q9NV44 126 aa6.36□□□□□ -1.39
HMGB3-201ENST00000325307 BCE1O60756 84 aa6.35□□□□□ -1.39
HMGB3-201ENST00000325307 KRTAP7-1Q8IUC3 87 aa6.35□□□□□ -1.39
HMGB3-201ENST00000325307 IGLV5-37A0A075B6J1 123 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 IGLV6-57P01721 117 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 LINC00167Q96N53 147 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 HECTD4Q9Y4D8 3996 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 RYR2Q92736 4967 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 TRAV23DV6A0A075B6W5 121 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 UBE2BP63146 152 aa6.34□□□□□ -1.39
HMGB3-201ENST00000325307 ATP5EP2Q5VTU8 51 aa6.33□□□□□ -1.4
HMGB3-201ENST00000325307 KRTAP10-1P60331 282 aa6.33□□□□□ -1.4
HMGB3-201ENST00000325307 PHF5AQ7RTV0 110 aaKnown RBP6.33□□□□□ -1.4
HMGB3-201ENST00000325307 C8orf87E5RJ46 101 aa6.32□□□□□ -1.4
HMGB3-201ENST00000325307 C6orf99Q4VX62 202 aa6.32□□□□□ -1.4
HMGB3-201ENST00000325307 H0YGX0 51 aa6.32□□□□□ -1.4
HMGB3-201ENST00000325307 A0A087WVE0 104 aa6.31□□□□□ -1.4
HMGB3-201ENST00000325307 ZNF73O43830 326 aaPredicted RBP6.31□□□□□ -1.4
HMGB3-201ENST00000325307 KTN1-AS1Q86SY8 53 aa6.31□□□□□ -1.4
HMGB3-201ENST00000325307 FAM30AQ9NZY2 134 aa6.31□□□□□ -1.4
HMGB3-201ENST00000325307 IGLV1-50A0A075B6I6 118 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms