RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.77□□□□□ -0.52
CCDC43-201ENST00000315286 IGLV1-50A0A075B6I6 118 aa11.76□□□□□ -0.53
CCDC43-201ENST00000315286 C14orf177Q52M58 125 aa11.76□□□□□ -0.53
CCDC43-201ENST00000315286 SDIM1Q6ZPB5 146 aa11.75□□□□□ -0.53
CCDC43-201ENST00000315286 A0A096LNI7 61 aa11.75□□□□□ -0.53
CCDC43-201ENST00000315286 LRCOL1A6NCL2 159 aa11.75□□□□□ -0.53
CCDC43-201ENST00000315286 Q6ZRN7 208 aaPredicted RBP11.74□□□□□ -0.53
CCDC43-201ENST00000315286 MRPL55Q7Z7F7 128 aaKnown RBP11.74□□□□□ -0.53
CCDC43-201ENST00000315286 LAMTOR3Q9UHA4 124 aa11.74□□□□□ -0.53
CCDC43-201ENST00000315286 IGKV2-24A0A0C4DH68 120 aa11.73□□□□□ -0.53
CCDC43-201ENST00000315286 C16orf90A8MZG2 172 aa11.73□□□□□ -0.53
CCDC43-201ENST00000315286 H3BQ85 93 aa11.73□□□□□ -0.53
CCDC43-201ENST00000315286 M0R2N4 97 aa11.73□□□□□ -0.53
CCDC43-201ENST00000315286 CCKP06307 115 aa11.73□□□□□ -0.53
CCDC43-201ENST00000315286 PRYO14603 147 aa11.72□□□□□ -0.53
CCDC43-201ENST00000315286 KRTAP4-16G5E9R7 235 aaPredicted RBP11.71□□□□□ -0.53
CCDC43-201ENST00000315286 RBM3P98179 157 aaKnown RBP11.71□□□□□ -0.53
CCDC43-201ENST00000315286 SPRR1AP35321 89 aa11.71□□□□□ -0.54
CCDC43-201ENST00000315286 LINC00643Q86TS7 51 aa11.7□□□□□ -0.54
CCDC43-201ENST00000315286 LINC00846Q9NV44 126 aa11.7□□□□□ -0.54
CCDC43-201ENST00000315286 A0A1W2PNN7 141 aa11.69□□□□□ -0.54
CCDC43-201ENST00000315286 GHRHP01286 108 aa11.69□□□□□ -0.54
CCDC43-201ENST00000315286 FBN3Q75N90 2809 aa11.68□□□□□ -0.54
CCDC43-201ENST00000315286 B5MCH6 92 aa11.68□□□□□ -0.54
CCDC43-201ENST00000315286 Q6ZRX8 168 aa11.67□□□□□ -0.54
CCDC43-201ENST00000315286 Q6Q795 121 aa11.67□□□□□ -0.54
CCDC43-201ENST00000315286 ETDCA0A1B0GVM5 59 aa11.66□□□□□ -0.54
CCDC43-201ENST00000315286 C9orf163Q8N9P6 203 aa11.66□□□□□ -0.54
CCDC43-201ENST00000315286 CHTF8P0CG12 524 aa11.66□□□□□ -0.54
CCDC43-201ENST00000315286 KRTAP21-3Q3LHN1 58 aa11.66□□□□□ -0.54
CCDC43-201ENST00000315286 Q6ZQT0 140 aa11.66□□□□□ -0.54
CCDC43-201ENST00000315286 Q9BRP9 147 aa11.66□□□□□ -0.54
CCDC43-201ENST00000315286 LOC110117498A0A087WWA1 95 aa11.65□□□□□ -0.54
CCDC43-201ENST00000315286 TRBV7-7A0A0K0K1E9 115 aa11.65□□□□□ -0.54
CCDC43-201ENST00000315286 KMT2AQ03164 3969 aa11.65□□□□□ -0.54
CCDC43-201ENST00000315286 NDUFV3P56181 108 aaKnown RBP11.64□□□□□ -0.55
CCDC43-201ENST00000315286 DSCR8Q96T75 97 aa11.64□□□□□ -0.55
CCDC43-201ENST00000315286 DHRS4-AS1Q9P1J3 65 aa11.64□□□□□ -0.55
CCDC43-201ENST00000315286 REG3GQ6UW15 175 aa11.63□□□□□ -0.55
CCDC43-201ENST00000315286 TGP01266 2768 aa11.61□□□□□ -0.55
CCDC43-201ENST00000315286 DEFB105AQ8NG35 78 aa11.61□□□□□ -0.55
CCDC43-201ENST00000315286 DNAH2Q9P225 4427 aa11.61□□□□□ -0.55
CCDC43-201ENST00000315286 Q6ZR54 194 aa11.6□□□□□ -0.55
CCDC43-201ENST00000315286 Q8N377 158 aa11.6□□□□□ -0.55
CCDC43-201ENST00000315286 TRBV7-4A0A0J9YYF1 115 aa11.59□□□□□ -0.55
CCDC43-201ENST00000315286 LINC01547P58512 204 aaPredicted RBP11.59□□□□□ -0.55
CCDC43-201ENST00000315286 IMUPQ9GZP8 106 aa11.59□□□□□ -0.55
CCDC43-201ENST00000315286 A0A087WTM6 91 aa11.58□□□□□ -0.56
CCDC43-201ENST00000315286 PDE6GP18545 87 aa11.58□□□□□ -0.56
CCDC43-201ENST00000315286 ERC2-IT1O76042 136 aa11.58□□□□□ -0.56
CCDC43-201ENST00000315286 UBE2BP63146 152 aa11.57□□□□□ -0.56
CCDC43-201ENST00000315286 PHF5AQ7RTV0 110 aaKnown RBP11.57□□□□□ -0.56
CCDC43-201ENST00000315286 ST20-AS1Q8NBB2 130 aa11.57□□□□□ -0.56
CCDC43-201ENST00000315286 IGKV3D-7A0A0C4DH55 119 aa11.55□□□□□ -0.56
CCDC43-201ENST00000315286 PANO1I0J062 215 aa11.55□□□□□ -0.56
CCDC43-201ENST00000315286 Q6JHZ5 121 aa11.55□□□□□ -0.56
CCDC43-201ENST00000315286 PKIGQ9Y2B9 76 aa11.55□□□□□ -0.56
CCDC43-201ENST00000315286 KRTAP11-1Q8IUC1 163 aa11.55□□□□□ -0.56
CCDC43-201ENST00000315286 FUSP35637 526 aaKnown RBP eCLIP11.53□□□□□ -0.56
CCDC43-201ENST00000315286 LINC00474Q9P2X8 69 aa11.53□□□□□ -0.56
CCDC43-201ENST00000315286 IGLV5-48A0A075B6I7 105 aa11.52□□□□□ -0.57
CCDC43-201ENST00000315286 FAM19A1Q7Z5A9 133 aa11.52□□□□□ -0.57
CCDC43-201ENST00000315286 C3orf22Q8N5N4 141 aa11.52□□□□□ -0.57
CCDC43-201ENST00000315286 HECTD4Q9Y4D8 3996 aa11.52□□□□□ -0.57
CCDC43-201ENST00000315286 LY6G6CO95867 125 aa11.51□□□□□ -0.57
CCDC43-201ENST00000315286 PRLHP81277 87 aa11.51□□□□□ -0.57
CCDC43-201ENST00000315286 DNAH17Q9UFH2 4485 aa11.51□□□□□ -0.57
CCDC43-201ENST00000315286 ANAPC13Q9BS18 74 aa11.51□□□□□ -0.57
CCDC43-201ENST00000315286 UBL5Q9BZL1 73 aa11.51□□□□□ -0.57
CCDC43-201ENST00000315286 DPH3Q96FX2 82 aa11.5□□□□□ -0.57
CCDC43-201ENST00000315286 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.49□□□□□ -0.57
CCDC43-201ENST00000315286 C1orf134Q5TEV5 83 aa11.48□□□□□ -0.57
CCDC43-201ENST00000315286 FAM236AA0A1B0GUQ0 79 aa11.48□□□□□ -0.57
CCDC43-201ENST00000315286 FAM236BA0A1B0GV22 79 aa11.48□□□□□ -0.57
CCDC43-201ENST00000315286 WWC2-AS2Q96NR7 200 aa11.47□□□□□ -0.57
CCDC43-201ENST00000315286 SPACA4Q8TDM5 124 aa11.47□□□□□ -0.57
CCDC43-201ENST00000315286 RTL8CO15255 209 aa11.46□□□□□ -0.57
CCDC43-201ENST00000315286 DNAH6Q9C0G6 4158 aa11.45□□□□□ -0.58
CCDC43-201ENST00000315286 Q6ZVQ6 151 aa11.45□□□□□ -0.58
CCDC43-201ENST00000315286 HIGD2AQ9BW72 106 aa11.45□□□□□ -0.58
CCDC43-201ENST00000315286 TNP2Q05952 138 aa11.45□□□□□ -0.58
CCDC43-201ENST00000315286 LINC00476Q8WZB0 136 aa11.44□□□□□ -0.58
CCDC43-201ENST00000315286 ATP5EP2Q5VTU8 51 aa11.44□□□□□ -0.58
CCDC43-201ENST00000315286 SMIM29Q86T20 159 aa11.42□□□□□ -0.58
CCDC43-201ENST00000315286 A0A087WVE0 104 aa11.42□□□□□ -0.58
CCDC43-201ENST00000315286 EPM2AB3EWF7 344 aa11.42□□□□□ -0.58
CCDC43-201ENST00000315286 SRRM2Q9UQ35 2752 aaKnown RBP11.41□□□□□ -0.58
CCDC43-201ENST00000315286 H0Y9J4 135 aa11.4□□□□□ -0.58
CCDC43-201ENST00000315286 HIST1H4AP62805 103 aaKnown RBP11.4□□□□□ -0.58
CCDC43-201ENST00000315286 HAMPP81172 84 aa11.4□□□□□ -0.58
CCDC43-201ENST00000315286 C1orf137Q5JT78 98 aa11.39□□□□□ -0.59
CCDC43-201ENST00000315286 IGLV5-52A0A0A0MRZ9 124 aa11.38□□□□□ -0.59
CCDC43-201ENST00000315286 UBE2AP49459 152 aa11.37□□□□□ -0.59
CCDC43-201ENST00000315286 ALMS1Q8TCU4 4167 aa11.37□□□□□ -0.59
CCDC43-201ENST00000315286 A0A1W2PNM2 257 aa11.37□□□□□ -0.59
CCDC43-201ENST00000315286 BCE1O60756 84 aa11.36□□□□□ -0.59
CCDC43-201ENST00000315286 C3orf84H3BNL1 204 aa11.36□□□□□ -0.59
CCDC43-201ENST00000315286 DNAH8Q96JB1 4490 aa11.33□□□□□ -0.6
CCDC43-201ENST00000315286 FRAS1Q86XX4 4008 aa11.33□□□□□ -0.6
CCDC43-201ENST00000315286 KRTAP13-1Q8IUC0 172 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms