RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CHTF8P0CG12 524 aa7.41□□□□□ -1.22
CUX1-202ENST00000292538 DSCR8Q96T75 97 aa7.41□□□□□ -1.22
CUX1-202ENST00000292538 LOC107984640A0A0U1RRK4 108 aa7.4□□□□□ -1.22
CUX1-202ENST00000292538 LINC00643Q86TS7 51 aa7.4□□□□□ -1.22
CUX1-202ENST00000292538 OBSCN-AS1Q96MR7 158 aa7.4□□□□□ -1.22
CUX1-202ENST00000292538 B5MCH6 92 aa7.4□□□□□ -1.23
CUX1-202ENST00000292538 CCKP06307 115 aa7.4□□□□□ -1.23
CUX1-202ENST00000292538 PLECQ15149 4684 aaKnown RBP7.4□□□□□ -1.23
CUX1-202ENST00000292538 A0A096LNI7 61 aa7.39□□□□□ -1.23
CUX1-202ENST00000292538 ETDCA0A1B0GVM5 59 aa7.39□□□□□ -1.23
CUX1-202ENST00000292538 C3orf22Q8N5N4 141 aa7.39□□□□□ -1.23
CUX1-202ENST00000292538 FAM236AA0A1B0GUQ0 79 aa7.39□□□□□ -1.23
CUX1-202ENST00000292538 FAM236BA0A1B0GV22 79 aa7.39□□□□□ -1.23
CUX1-202ENST00000292538 NDUFV3P56181 108 aaKnown RBP7.39□□□□□ -1.23
CUX1-202ENST00000292538 MRPL55Q7Z7F7 128 aaKnown RBP7.39□□□□□ -1.23
CUX1-202ENST00000292538 NUPR2A6NF83 97 aa7.38□□□□□ -1.23
CUX1-202ENST00000292538 HIST1H4AP62805 103 aaKnown RBP7.38□□□□□ -1.23
CUX1-202ENST00000292538 KRTAP7-1Q8IUC3 87 aa7.38□□□□□ -1.23
CUX1-202ENST00000292538 UBE2BP63146 152 aa7.38□□□□□ -1.23
CUX1-202ENST00000292538 LINC00528Q8N1L1 170 aa7.38□□□□□ -1.23
CUX1-202ENST00000292538 DNAH1Q9P2D7 4330 aa7.38□□□□□ -1.23
CUX1-202ENST00000292538 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.37□□□□□ -1.23
CUX1-202ENST00000292538 A0A087WVE0 104 aa7.37□□□□□ -1.23
CUX1-202ENST00000292538 NBDYA0A0U1RRE5 68 aa7.37□□□□□ -1.23
CUX1-202ENST00000292538 TLX1NBP0CAT3 122 aa7.36□□□□□ -1.23
CUX1-202ENST00000292538 NHLRC4P0CG21 123 aaPredicted RBP7.36□□□□□ -1.23
CUX1-202ENST00000292538 ST20-AS1Q8NBB2 130 aa7.36□□□□□ -1.23
CUX1-202ENST00000292538 KCNQ1DNQ9H478 68 aa7.36□□□□□ -1.23
CUX1-202ENST00000292538 A0A1W2PNN7 141 aa7.36□□□□□ -1.23
CUX1-202ENST00000292538 SRRM2Q9UQ35 2752 aaKnown RBP7.36□□□□□ -1.23
CUX1-202ENST00000292538 IGLV1-50A0A075B6I6 118 aa7.35□□□□□ -1.23
CUX1-202ENST00000292538 HAMPP81172 84 aa7.35□□□□□ -1.23
CUX1-202ENST00000292538 V9GYY9 64 aa7.34□□□□□ -1.23
CUX1-202ENST00000292538 STARD9Q9P2P6 4700 aa7.34□□□□□ -1.23
CUX1-202ENST00000292538 Q6ZQT0 140 aa7.34□□□□□ -1.23
CUX1-202ENST00000292538 PRLHP81277 87 aa7.34□□□□□ -1.24
CUX1-202ENST00000292538 UBL5Q9BZL1 73 aa7.34□□□□□ -1.24
CUX1-202ENST00000292538 Q9BRP9 147 aa7.33□□□□□ -1.24
CUX1-202ENST00000292538 FBN3Q75N90 2809 aa7.33□□□□□ -1.24
CUX1-202ENST00000292538 ERC2-IT1O76042 136 aa7.33□□□□□ -1.24
CUX1-202ENST00000292538 HIGD2AQ9BW72 106 aa7.33□□□□□ -1.24
CUX1-202ENST00000292538 TRBV7-7A0A0K0K1E9 115 aa7.32□□□□□ -1.24
CUX1-202ENST00000292538 SCXQ7RTU7 201 aa7.32□□□□□ -1.24
CUX1-202ENST00000292538 PHF5AQ7RTV0 110 aaKnown RBP7.32□□□□□ -1.24
CUX1-202ENST00000292538 TRBV7-6A0A0J9YX20 115 aa7.32□□□□□ -1.24
CUX1-202ENST00000292538 Q6ZRX8 168 aa7.32□□□□□ -1.24
CUX1-202ENST00000292538 FAM19A1Q7Z5A9 133 aa7.32□□□□□ -1.24
CUX1-202ENST00000292538 C16orf90A8MZG2 172 aa7.31□□□□□ -1.24
CUX1-202ENST00000292538 Q6Q795 121 aa7.31□□□□□ -1.24
CUX1-202ENST00000292538 REG3GQ6UW15 175 aa7.31□□□□□ -1.24
CUX1-202ENST00000292538 C3orf84H3BNL1 204 aa7.31□□□□□ -1.24
CUX1-202ENST00000292538 KMT2AQ03164 3969 aa7.3□□□□□ -1.24
CUX1-202ENST00000292538 CCDC179H3BU77 68 aa7.3□□□□□ -1.24
CUX1-202ENST00000292538 LY6G6CO95867 125 aa7.3□□□□□ -1.24
CUX1-202ENST00000292538 GHRHP01286 108 aa7.3□□□□□ -1.24
CUX1-202ENST00000292538 Q8N377 158 aa7.3□□□□□ -1.24
CUX1-202ENST00000292538 C14orf177Q52M58 125 aa7.3□□□□□ -1.24
CUX1-202ENST00000292538 PRYO14603 147 aa7.29□□□□□ -1.24
CUX1-202ENST00000292538 A0A0G2JQZ4 141 aa7.29□□□□□ -1.24
CUX1-202ENST00000292538 CNBPP62633 177 aaKnown RBP7.29□□□□□ -1.24
CUX1-202ENST00000292538 PLA2G2DQ9UNK4 145 aa7.29□□□□□ -1.24
CUX1-202ENST00000292538 DHRS4-AS1Q9P1J3 65 aa7.28□□□□□ -1.24
CUX1-202ENST00000292538 LRCOL1A6NCL2 159 aa7.28□□□□□ -1.24
CUX1-202ENST00000292538 PANO1I0J062 215 aa7.28□□□□□ -1.24
CUX1-202ENST00000292538 LOC110117498A0A087WWA1 95 aa7.27□□□□□ -1.25
CUX1-202ENST00000292538 Q6JHZ5 121 aa7.27□□□□□ -1.25
CUX1-202ENST00000292538 IMUPQ9GZP8 106 aa7.27□□□□□ -1.25
CUX1-202ENST00000292538 Q6ZVQ6 151 aa7.26□□□□□ -1.25
CUX1-202ENST00000292538 KRTAP11-1Q8IUC1 163 aa7.26□□□□□ -1.25
CUX1-202ENST00000292538 IGLV5-37A0A075B6J1 123 aa7.26□□□□□ -1.25
CUX1-202ENST00000292538 KRTAP4-16G5E9R7 235 aaPredicted RBP7.26□□□□□ -1.25
CUX1-202ENST00000292538 H3BQ85 93 aa7.25□□□□□ -1.25
CUX1-202ENST00000292538 TRBV7-4A0A0J9YYF1 115 aa7.25□□□□□ -1.25
CUX1-202ENST00000292538 C9orf163Q8N9P6 203 aa7.24□□□□□ -1.25
CUX1-202ENST00000292538 PDE6GP18545 87 aa7.24□□□□□ -1.25
CUX1-202ENST00000292538 SPRR1AP35321 89 aa7.24□□□□□ -1.25
CUX1-202ENST00000292538 Q6ZRN7 208 aaPredicted RBP7.24□□□□□ -1.25
CUX1-202ENST00000292538 LINC01547P58512 204 aaPredicted RBP7.23□□□□□ -1.25
CUX1-202ENST00000292538 Q8N9L7 120 aa7.23□□□□□ -1.25
CUX1-202ENST00000292538 UBE2AP49459 152 aa7.23□□□□□ -1.25
CUX1-202ENST00000292538 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.22□□□□□ -1.25
CUX1-202ENST00000292538 C1orf137Q5JT78 98 aa7.22□□□□□ -1.25
CUX1-202ENST00000292538 A0A087WTM6 91 aa7.21□□□□□ -1.25
CUX1-202ENST00000292538 NREPQ16612 68 aa7.21□□□□□ -1.25
CUX1-202ENST00000292538 DYNC2H1Q8NCM8 4307 aaKnown RBP7.21□□□□□ -1.25
CUX1-202ENST00000292538 EPM2AB3EWF7 344 aa7.21□□□□□ -1.26
CUX1-202ENST00000292538 F8WEM9 126 aa7.2□□□□□ -1.26
CUX1-202ENST00000292538 RTL8CO15255 209 aa7.18□□□□□ -1.26
CUX1-202ENST00000292538 C1orf134Q5TEV5 83 aa7.18□□□□□ -1.26
CUX1-202ENST00000292538 C4orf26Q17RF5 130 aa7.17□□□□□ -1.26
CUX1-202ENST00000292538 DEFB116Q30KQ4 102 aa7.17□□□□□ -1.26
CUX1-202ENST00000292538 C9orf153Q5TBE3 101 aa7.17□□□□□ -1.26
CUX1-202ENST00000292538 VPS13DQ5THJ4 4388 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 IGLV5-52A0A0A0MRZ9 124 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 A0A1W2PNM2 257 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 ATOX1O00244 68 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 ATP5EP2Q5VTU8 51 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 LINC00474Q9P2X8 69 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 LINC00476Q8WZB0 136 aa7.16□□□□□ -1.26
CUX1-202ENST00000292538 LINC00336Q6ZUF6 198 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms