RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KCNQ1DNQ9H478 68 aa8.97□□□□□ -0.97
SS18-201ENST00000269137 ZNF73O43830 326 aaPredicted RBP8.96□□□□□ -0.97
SS18-201ENST00000269137 TRACP01848 142 aa8.96□□□□□ -0.97
SS18-201ENST00000269137 MRPL55Q7Z7F7 128 aaKnown RBP8.96□□□□□ -0.97
SS18-201ENST00000269137 CDIP1Q9H305 208 aa8.96□□□□□ -0.97
SS18-201ENST00000269137 TRBV7-6A0A0J9YX20 115 aa8.96□□□□□ -0.98
SS18-201ENST00000269137 A0A1W2PNN7 141 aa8.96□□□□□ -0.98
SS18-201ENST00000269137 CHTF8P0CG12 524 aa8.96□□□□□ -0.98
SS18-201ENST00000269137 C21orf62-AS1Q17RA5 79 aa8.96□□□□□ -0.98
SS18-201ENST00000269137 DIRC1Q969H9 104 aa8.96□□□□□ -0.98
SS18-201ENST00000269137 LINC00167Q96N53 147 aa8.96□□□□□ -0.98
SS18-201ENST00000269137 IGLV5-52A0A0A0MRZ9 124 aa8.95□□□□□ -0.98
SS18-201ENST00000269137 IGLV1-50A0A075B6I6 118 aa8.94□□□□□ -0.98
SS18-201ENST00000269137 TEX49A0A1B0GTD5 131 aa8.94□□□□□ -0.98
SS18-201ENST00000269137 A0A1B0GX51 115 aa8.94□□□□□ -0.98
SS18-201ENST00000269137 A0A087WYN8 130 aa8.94□□□□□ -0.98
SS18-201ENST00000269137 DNAH5Q8TE73 4624 aa8.93□□□□□ -0.98
SS18-201ENST00000269137 PRYO14603 147 aa8.92□□□□□ -0.98
SS18-201ENST00000269137 FUSP35637 526 aaKnown RBP eCLIP8.92□□□□□ -0.98
SS18-201ENST00000269137 SPACA4Q8TDM5 124 aa8.92□□□□□ -0.98
SS18-201ENST00000269137 RPL37AP8A6NKH3 93 aa8.91□□□□□ -0.98
SS18-201ENST00000269137 EPM2AB3EWF7 344 aa8.91□□□□□ -0.98
SS18-201ENST00000269137 PANO1I0J062 215 aa8.91□□□□□ -0.98
SS18-201ENST00000269137 COX7BP24311 80 aa8.91□□□□□ -0.98
SS18-201ENST00000269137 ELOF1P60002 83 aaKnown RBP8.91□□□□□ -0.98
SS18-201ENST00000269137 LINC00575Q6W349 94 aa8.91□□□□□ -0.98
SS18-201ENST00000269137 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.91□□□□□ -0.98
SS18-201ENST00000269137 PKD1P98161 4303 aa8.9□□□□□ -0.98
SS18-201ENST00000269137 SPRR1AP35321 89 aa8.9□□□□□ -0.98
SS18-201ENST00000269137 SNCGO76070 127 aa8.89□□□□□ -0.99
SS18-201ENST00000269137 SCGB1A1P11684 91 aa8.89□□□□□ -0.99
SS18-201ENST00000269137 DNAL4O96015 105 aa8.89□□□□□ -0.99
SS18-201ENST00000269137 BAALC-AS2P0C853 105 aa8.89□□□□□ -0.99
SS18-201ENST00000269137 KRTAP10-2P60368 255 aa8.89□□□□□ -0.99
SS18-201ENST00000269137 DNAH8Q96JB1 4490 aa8.88□□□□□ -0.99
SS18-201ENST00000269137 KRTAP4-16G5E9R7 235 aaPredicted RBP8.88□□□□□ -0.99
SS18-201ENST00000269137 DPH3Q96FX2 82 aa8.88□□□□□ -0.99
SS18-201ENST00000269137 LINC00528Q8N1L1 170 aa8.87□□□□□ -0.99
SS18-201ENST00000269137 RYR2Q92736 4967 aa8.87□□□□□ -0.99
SS18-201ENST00000269137 hADV29S1A0JD25 119 aa8.87□□□□□ -0.99
SS18-201ENST00000269137 XGP55808 180 aa8.87□□□□□ -0.99
SS18-201ENST00000269137 LINC00336Q6ZUF6 198 aa8.87□□□□□ -0.99
SS18-201ENST00000269137 PHF5AQ7RTV0 110 aaKnown RBP8.86□□□□□ -0.99
SS18-201ENST00000269137 MT-ATP8P03928 68 aa8.85□□□□□ -0.99
SS18-201ENST00000269137 REG3GQ6UW15 175 aa8.85□□□□□ -0.99
SS18-201ENST00000269137 PLAC8Q9NZF1 115 aa8.85□□□□□ -0.99
SS18-201ENST00000269137 KMT2CQ8NEZ4 4911 aaKnown RBP8.85□□□□□ -0.99
SS18-201ENST00000269137 INAFM2P0DMQ5 153 aa8.84□□□□□ -0.99
SS18-201ENST00000269137 ETDCA0A1B0GVM5 59 aa8.84□□□□□ -0.99
SS18-201ENST00000269137 B5MCH6 92 aa8.84□□□□□ -0.99
SS18-201ENST00000269137 Q6ZRX8 168 aa8.84□□□□□ -0.99
SS18-201ENST00000269137 FAM240AA0A1B0GVK7 77 aa8.83□□□□□ -1
SS18-201ENST00000269137 UBE2BP63146 152 aa8.83□□□□□ -1
SS18-201ENST00000269137 ORMDL1Q9P0S3 153 aa8.83□□□□□ -1
SS18-201ENST00000269137 KRTAP11-1Q8IUC1 163 aa8.82□□□□□ -1
SS18-201ENST00000269137 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.81□□□□□ -1
SS18-201ENST00000269137 DHRS4-AS1Q9P1J3 65 aa8.81□□□□□ -1
SS18-201ENST00000269137 H3BQ85 93 aa8.8□□□□□ -1
SS18-201ENST00000269137 Q6ZQY7 126 aa8.8□□□□□ -1
SS18-201ENST00000269137 TMEM256-PLSCR3K7ERE1 68 aa8.79□□□□□ -1
SS18-201ENST00000269137 Q6ZSA8 131 aa8.79□□□□□ -1
SS18-201ENST00000269137 Q9BRP9 147 aa8.79□□□□□ -1
SS18-201ENST00000269137 KRTAP10-1P60331 282 aa8.78□□□□□ -1
SS18-201ENST00000269137 GHRHP01286 108 aa8.77□□□□□ -1
SS18-201ENST00000269137 ACYP1P07311 99 aa8.77□□□□□ -1
SS18-201ENST00000269137 H0Y9J4 135 aa8.77□□□□□ -1.01
SS18-201ENST00000269137 FAM30AQ9NZY2 134 aa8.77□□□□□ -1.01
SS18-201ENST00000269137 FAM19A1Q7Z5A9 133 aa8.76□□□□□ -1.01
SS18-201ENST00000269137 OBSCN-AS1Q96MR7 158 aa8.75□□□□□ -1.01
SS18-201ENST00000269137 A0A1B0GVY2 172 aa8.75□□□□□ -1.01
SS18-201ENST00000269137 BCE1O60756 84 aa8.75□□□□□ -1.01
SS18-201ENST00000269137 PKHD1P08F94 4074 aa8.74□□□□□ -1.01
SS18-201ENST00000269137 SMCR5Q8TEV8 140 aa8.74□□□□□ -1.01
SS18-201ENST00000269137 CIRBP-AS1Q8TBR5 109 aa8.73□□□□□ -1.01
SS18-201ENST00000269137 LRP1BQ9NZR2 4599 aa8.73□□□□□ -1.01
SS18-201ENST00000269137 PRLHP81277 87 aa8.73□□□□□ -1.01
SS18-201ENST00000269137 ERC2-IT1O76042 136 aa8.72□□□□□ -1.01
SS18-201ENST00000269137 Q6Q795 121 aa8.71□□□□□ -1.01
SS18-201ENST00000269137 SCXQ7RTU7 201 aa8.71□□□□□ -1.01
SS18-201ENST00000269137 KRTAP13-1Q8IUC0 172 aa8.71□□□□□ -1.01
SS18-201ENST00000269137 DYNC1H1Q14204 4646 aaKnown RBP8.71□□□□□ -1.02
SS18-201ENST00000269137 UBE2AP49459 152 aa8.7□□□□□ -1.02
SS18-201ENST00000269137 PSORS1C2Q9UIG4 136 aa8.7□□□□□ -1.02
SS18-201ENST00000269137 IGLV5-48A0A075B6I7 105 aa8.7□□□□□ -1.02
SS18-201ENST00000269137 JMJD7-PLA2G4BH0Y9G9 81 aa8.7□□□□□ -1.02
SS18-201ENST00000269137 LINC01547P58512 204 aaPredicted RBP8.7□□□□□ -1.02
SS18-201ENST00000269137 GAGE2AQ6NT46 116 aa8.7□□□□□ -1.02
SS18-201ENST00000269137 C14orf132Q9NPU4 83 aa8.7□□□□□ -1.02
SS18-201ENST00000269137 Q8N377 158 aa8.68□□□□□ -1.02
SS18-201ENST00000269137 HIGD2AQ9BW72 106 aa8.68□□□□□ -1.02
SS18-201ENST00000269137 ST20-AS1Q8NBB2 130 aa8.68□□□□□ -1.02
SS18-201ENST00000269137 LAMTOR3Q9UHA4 124 aa8.68□□□□□ -1.02
SS18-201ENST00000269137 A0A1B0GV72 72 aa8.66□□□□□ -1.02
SS18-201ENST00000269137 LINC00643Q86TS7 51 aa8.66□□□□□ -1.02
SS18-201ENST00000269137 DEFB105AQ8NG35 78 aa8.66□□□□□ -1.02
SS18-201ENST00000269137 SRRM2Q9UQ35 2752 aaKnown RBP8.66□□□□□ -1.02
SS18-201ENST00000269137 NDUFV3P56181 108 aaKnown RBP8.66□□□□□ -1.02
SS18-201ENST00000269137 C1orf137Q5JT78 98 aa8.66□□□□□ -1.02
SS18-201ENST00000269137 RYR3Q15413 4870 aa8.65□□□□□ -1.02
SS18-201ENST00000269137 TRBV7-7A0A0K0K1E9 115 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms