RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 RPS28P62857 69 aaKnown RBP8.6□□□□□ -1.03
SNX1-201ENST00000261889 FAM229BQ4G0N7 80 aa8.6□□□□□ -1.03
SNX1-201ENST00000261889 Q8NAQ8 132 aa8.6□□□□□ -1.03
SNX1-201ENST00000261889 STAB2Q8WWQ8 2551 aa8.59□□□□□ -1.03
SNX1-201ENST00000261889 FAM30AQ9NZY2 134 aa8.59□□□□□ -1.03
SNX1-201ENST00000261889 TRAV7A0A075B6U4 112 aa8.59□□□□□ -1.03
SNX1-201ENST00000261889 IGHV4-30-4P0DP06 118 aa8.59□□□□□ -1.03
SNX1-201ENST00000261889 Q6ZRP5 223 aa8.59□□□□□ -1.03
SNX1-201ENST00000261889 Q6ZTC4 211 aa8.59□□□□□ -1.03
SNX1-201ENST00000261889 ATP5EP2Q5VTU8 51 aa8.58□□□□□ -1.04
SNX1-201ENST00000261889 NREPQ16612 68 aa8.58□□□□□ -1.04
SNX1-201ENST00000261889 LYRM9A8MSI8 78 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 SPART-AS1P0CW21 52 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 FP248Q71RG6 208 aaPredicted RBP8.57□□□□□ -1.04
SNX1-201ENST00000261889 ST20-AS1Q8NBB2 130 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 LYSTQ99698 3801 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 HIGD2AQ9BW72 106 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 LELP1Q5T871 98 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 SERTAD4-AS1Q5TG53 156 aa8.57□□□□□ -1.04
SNX1-201ENST00000261889 VPREB1P12018 145 aa8.56□□□□□ -1.04
SNX1-201ENST00000261889 LOC110117498A0A087WWA1 95 aa8.56□□□□□ -1.04
SNX1-201ENST00000261889 KPRPQ5T749 579 aaPredicted RBP8.56□□□□□ -1.04
SNX1-201ENST00000261889 A0A0J9YWU9 116 aa8.55□□□□□ -1.04
SNX1-201ENST00000261889 CASC10Q5T4H9 136 aa8.55□□□□□ -1.04
SNX1-201ENST00000261889 C1orf43Q9BWL3 253 aa8.55□□□□□ -1.04
SNX1-201ENST00000261889 MIFP14174 115 aa8.54□□□□□ -1.04
SNX1-201ENST00000261889 TRBV7-6A0A0J9YX20 115 aa8.53□□□□□ -1.04
SNX1-201ENST00000261889 TRBV7-4A0A0J9YYF1 115 aa8.53□□□□□ -1.04
SNX1-201ENST00000261889 ELOF1P60002 83 aaKnown RBP8.53□□□□□ -1.04
SNX1-201ENST00000261889 TMEM254Q8TBM7 123 aa8.53□□□□□ -1.04
SNX1-201ENST00000261889 MRAPQ8TCY5 172 aa8.53□□□□□ -1.04
SNX1-201ENST00000261889 BRK1Q8WUW1 75 aa8.53□□□□□ -1.04
SNX1-201ENST00000261889 C15orf56Q8N910 161 aa8.53□□□□□ -1.04
SNX1-201ENST00000261889 WIPF1O43516 503 aa8.52□□□□□ -1.05
SNX1-201ENST00000261889 APOC4P55056 127 aa8.52□□□□□ -1.05
SNX1-201ENST00000261889 ESRGQ1W209 222 aa8.52□□□□□ -1.05
SNX1-201ENST00000261889 KRTAP21-3Q3LHN1 58 aa8.52□□□□□ -1.05
SNX1-201ENST00000261889 PRR34Q9NV39 138 aa8.52□□□□□ -1.05
SNX1-201ENST00000261889 SMIM29Q86T20 159 aa8.51□□□□□ -1.05
SNX1-201ENST00000261889 DNAH10Q8IVF4 4471 aa8.51□□□□□ -1.05
SNX1-201ENST00000261889 IGKV4-1P06312 121 aa8.5□□□□□ -1.05
SNX1-201ENST00000261889 NKAPP1Q8N9T2 125 aa8.5□□□□□ -1.05
SNX1-201ENST00000261889 C9orf66Q5T8R8 295 aa8.49□□□□□ -1.05
SNX1-201ENST00000261889 LINC00528Q8N1L1 170 aa8.49□□□□□ -1.05
SNX1-201ENST00000261889 KLKP1Q107X0 134 aa8.49□□□□□ -1.05
SNX1-201ENST00000261889 SERP1Q9Y6X1 66 aa8.49□□□□□ -1.05
SNX1-201ENST00000261889 DNHD1Q96M86 4753 aa8.48□□□□□ -1.05
SNX1-201ENST00000261889 C7orf33Q8WU49 177 aa8.48□□□□□ -1.05
SNX1-201ENST00000261889 ERC2-IT1O76042 136 aa8.48□□□□□ -1.05
SNX1-201ENST00000261889 Q8N377 158 aa8.47□□□□□ -1.05
SNX1-201ENST00000261889 NDUFC2-KCTD14E9PQ53 114 aa8.47□□□□□ -1.05
SNX1-201ENST00000261889 M0R378 163 aa8.47□□□□□ -1.05
SNX1-201ENST00000261889 CXCL6P80162 114 aa8.47□□□□□ -1.05
SNX1-201ENST00000261889 A0A096LNI7 61 aa8.45□□□□□ -1.06
SNX1-201ENST00000261889 SYCNQ0VAF6 134 aa8.44□□□□□ -1.06
SNX1-201ENST00000261889 MDFIQ99750 246 aa8.44□□□□□ -1.06
SNX1-201ENST00000261889 IGKV2-24A0A0C4DH68 120 aa8.44□□□□□ -1.06
SNX1-201ENST00000261889 Q9BRP9 147 aa8.43□□□□□ -1.06
SNX1-201ENST00000261889 A0A1W2PNM2 257 aa8.43□□□□□ -1.06
SNX1-201ENST00000261889 UBE2BP63146 152 aa8.43□□□□□ -1.06
SNX1-201ENST00000261889 KRTAP26-1Q6PEX3 210 aa8.43□□□□□ -1.06
SNX1-201ENST00000261889 EGFEM1PQ0D2K5 195 aa8.42□□□□□ -1.06
SNX1-201ENST00000261889 WFDC13Q8IUB5 93 aa8.42□□□□□ -1.06
SNX1-201ENST00000261889 K7EQZ3 153 aa8.42□□□□□ -1.06
SNX1-201ENST00000261889 PRYO14603 147 aa8.42□□□□□ -1.06
SNX1-201ENST00000261889 EPM2AB3EWF7 344 aa8.41□□□□□ -1.06
SNX1-201ENST00000261889 FUSP35637 526 aaKnown RBP eCLIP8.41□□□□□ -1.06
SNX1-201ENST00000261889 KRTAP10-11P60412 298 aa8.41□□□□□ -1.06
SNX1-201ENST00000261889 RPL37AP61513 92 aaKnown RBP8.41□□□□□ -1.06
SNX1-201ENST00000261889 PDE6GP18545 87 aa8.4□□□□□ -1.06
SNX1-201ENST00000261889 OCR1Q9BZK8 76 aa8.4□□□□□ -1.06
SNX1-201ENST00000261889 C1orf137Q5JT78 98 aa8.4□□□□□ -1.07
SNX1-201ENST00000261889 PSPHP1O15172 72 aa8.39□□□□□ -1.07
SNX1-201ENST00000261889 PRLHP81277 87 aa8.39□□□□□ -1.07
SNX1-201ENST00000261889 DEFB131BA0A096LNP1 70 aa8.39□□□□□ -1.07
SNX1-201ENST00000261889 SMIM26A0A096LP01 95 aa8.39□□□□□ -1.07
SNX1-201ENST00000261889 GVQW2A0A096LPI5 108 aaPredicted RBP8.39□□□□□ -1.07
SNX1-201ENST00000261889 ETDCA0A1B0GVM5 59 aa8.39□□□□□ -1.07
SNX1-201ENST00000261889 KRTAP7-1Q8IUC3 87 aa8.37□□□□□ -1.07
SNX1-201ENST00000261889 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.35□□□□□ -1.07
SNX1-201ENST00000261889 A8MU10 97 aa8.34□□□□□ -1.07
SNX1-201ENST00000261889 PRO0628Q9UI54 55 aa8.33□□□□□ -1.08
SNX1-201ENST00000261889 Q6ZRX8 168 aa8.32□□□□□ -1.08
SNX1-201ENST00000261889 C11orf45Q8TAV5 145 aa8.32□□□□□ -1.08
SNX1-201ENST00000261889 DNAH9Q9NYC9 4486 aa8.32□□□□□ -1.08
SNX1-201ENST00000261889 DSCR10P59022 87 aa8.32□□□□□ -1.08
SNX1-201ENST00000261889 HUWE1Q7Z6Z7 4374 aaKnown RBP8.31□□□□□ -1.08
SNX1-201ENST00000261889 A0A087WSZ3 146 aa8.31□□□□□ -1.08
SNX1-201ENST00000261889 KCNQ1DNQ9H478 68 aa8.3□□□□□ -1.08
SNX1-201ENST00000261889 CHTF8P0CG12 524 aa8.3□□□□□ -1.08
SNX1-201ENST00000261889 C1orf64Q8NEQ6 169 aa8.29□□□□□ -1.08
SNX1-201ENST00000261889 LINC00476Q8WZB0 136 aa8.28□□□□□ -1.08
SNX1-201ENST00000261889 LINC00588Q9Y4M8 146 aa8.27□□□□□ -1.09
SNX1-201ENST00000261889 IGLV1-50A0A075B6I6 118 aa8.27□□□□□ -1.09
SNX1-201ENST00000261889 PSCAO43653 123 aa8.27□□□□□ -1.09
SNX1-201ENST00000261889 MRPL55Q7Z7F7 128 aaKnown RBP8.26□□□□□ -1.09
SNX1-201ENST00000261889 Q8NBF4 154 aa8.26□□□□□ -1.09
SNX1-201ENST00000261889 NDUFC1O43677 76 aa8.26□□□□□ -1.09
SNX1-201ENST00000261889 IGLV5-48A0A075B6I7 105 aa8.25□□□□□ -1.09
SNX1-201ENST00000261889 PRKDCP78527 4128 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms