RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 RBM3P98179 157 aaKnown RBP14.74□□□□□ -0.05
HOXD9-201ENST00000249499 IGLV1-50A0A075B6I6 118 aa14.73□□□□□ -0.05
HOXD9-201ENST00000249499 LOC110117498A0A087WWA1 95 aa14.73□□□□□ -0.05
HOXD9-201ENST00000249499 LAMTOR3Q9UHA4 124 aa14.73□□□□□ -0.05
HOXD9-201ENST00000249499 NBDYA0A0U1RRE5 68 aa14.72□□□□□ -0.05
HOXD9-201ENST00000249499 PDE6GP18545 87 aa14.72□□□□□ -0.05
HOXD9-201ENST00000249499 SPRR1AP35321 89 aa14.7□□□□□ -0.06
HOXD9-201ENST00000249499 FAM168BA1KXE4 195 aa14.69□□□□□ -0.06
HOXD9-201ENST00000249499 C16orf90A8MZG2 172 aa14.69□□□□□ -0.06
HOXD9-201ENST00000249499 KRTAP7-1Q8IUC3 87 aa14.69□□□□□ -0.06
HOXD9-201ENST00000249499 NDUFV3P56181 108 aaKnown RBP14.69□□□□□ -0.06
HOXD9-201ENST00000249499 MRPL55Q7Z7F7 128 aaKnown RBP14.69□□□□□ -0.06
HOXD9-201ENST00000249499 ANAPC13Q9BS18 74 aa14.69□□□□□ -0.06
HOXD9-201ENST00000249499 LINC00846Q9NV44 126 aa14.69□□□□□ -0.06
HOXD9-201ENST00000249499 PKIGQ9Y2B9 76 aa14.67□□□□□ -0.06
HOXD9-201ENST00000249499 KRTAP4-16G5E9R7 235 aaPredicted RBP14.67□□□□□ -0.06
HOXD9-201ENST00000249499 Q6ZQT0 140 aa14.67□□□□□ -0.06
HOXD9-201ENST00000249499 DHRS4-AS1Q9P1J3 65 aa14.67□□□□□ -0.06
HOXD9-201ENST00000249499 DSCR8Q96T75 97 aa14.66□□□□□ -0.06
HOXD9-201ENST00000249499 DNAH7Q8WXX0 4024 aa14.65□□□□□ -0.06
HOXD9-201ENST00000249499 Q6JHZ5 121 aa14.65□□□□□ -0.06
HOXD9-201ENST00000249499 Q6ZRX8 168 aa14.65□□□□□ -0.06
HOXD9-201ENST00000249499 FAM19A5Q7Z5A7 132 aaPredicted RBP14.64□□□□□ -0.07
HOXD9-201ENST00000249499 B5MCH6 92 aa14.63□□□□□ -0.07
HOXD9-201ENST00000249499 RPL37AP8A6NKH3 93 aa14.62□□□□□ -0.07
HOXD9-201ENST00000249499 A0A096LNI7 61 aa14.61□□□□□ -0.07
HOXD9-201ENST00000249499 ETDCA0A1B0GVM5 59 aa14.61□□□□□ -0.07
HOXD9-201ENST00000249499 LRCOL1A6NCL2 159 aa14.61□□□□□ -0.07
HOXD9-201ENST00000249499 Q6ZRN7 208 aaPredicted RBP14.61□□□□□ -0.07
HOXD9-201ENST00000249499 TRBV7-4A0A0J9YYF1 115 aa14.6□□□□□ -0.07
HOXD9-201ENST00000249499 CSMD3Q7Z407 3707 aa14.58□□□□□ -0.07
HOXD9-201ENST00000249499 ATP5EP2Q5VTU8 51 aa14.58□□□□□ -0.08
HOXD9-201ENST00000249499 C9orf163Q8N9P6 203 aa14.57□□□□□ -0.08
HOXD9-201ENST00000249499 REG3GQ6UW15 175 aa14.56□□□□□ -0.08
HOXD9-201ENST00000249499 UBL5Q9BZL1 73 aa14.56□□□□□ -0.08
HOXD9-201ENST00000249499 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.55□□□□□ -0.08
HOXD9-201ENST00000249499 Q9BRP9 147 aa14.55□□□□□ -0.08
HOXD9-201ENST00000249499 FAM236AA0A1B0GUQ0 79 aa14.54□□□□□ -0.08
HOXD9-201ENST00000249499 FAM236BA0A1B0GV22 79 aa14.54□□□□□ -0.08
HOXD9-201ENST00000249499 STARD9Q9P2P6 4700 aa14.53□□□□□ -0.08
HOXD9-201ENST00000249499 IGKV2-24A0A0C4DH68 120 aa14.53□□□□□ -0.08
HOXD9-201ENST00000249499 WWC2-AS2Q96NR7 200 aa14.53□□□□□ -0.08
HOXD9-201ENST00000249499 LYSTQ99698 3801 aa14.52□□□□□ -0.08
HOXD9-201ENST00000249499 A0A1W2PNN7 141 aa14.51□□□□□ -0.09
HOXD9-201ENST00000249499 LINC00474Q9P2X8 69 aa14.51□□□□□ -0.09
HOXD9-201ENST00000249499 TENM2Q9NT68 2774 aa14.51□□□□□ -0.09
HOXD9-201ENST00000249499 LINC01547P58512 204 aaPredicted RBP14.5□□□□□ -0.09
HOXD9-201ENST00000249499 PLECQ15149 4684 aaKnown RBP14.5□□□□□ -0.09
HOXD9-201ENST00000249499 Q8N377 158 aa14.5□□□□□ -0.09
HOXD9-201ENST00000249499 IGLV5-48A0A075B6I7 105 aa14.5□□□□□ -0.09
HOXD9-201ENST00000249499 IGKV3D-7A0A0C4DH55 119 aa14.5□□□□□ -0.09
HOXD9-201ENST00000249499 DNAH10Q8IVF4 4471 aa14.46□□□□□ -0.1
HOXD9-201ENST00000249499 UBE2BP63146 152 aa14.45□□□□□ -0.1
HOXD9-201ENST00000249499 M0R2N4 97 aa14.44□□□□□ -0.1
HOXD9-201ENST00000249499 HIST1H4AP62805 103 aaKnown RBP14.44□□□□□ -0.1
HOXD9-201ENST00000249499 Q6ZR54 194 aa14.44□□□□□ -0.1
HOXD9-201ENST00000249499 DEFB105AQ8NG35 78 aa14.44□□□□□ -0.1
HOXD9-201ENST00000249499 VPS13DQ5THJ4 4388 aa14.42□□□□□ -0.1
HOXD9-201ENST00000249499 A0A087WTM6 91 aa14.4□□□□□ -0.1
HOXD9-201ENST00000249499 CHTF8P0CG12 524 aa14.4□□□□□ -0.1
HOXD9-201ENST00000249499 Q6ZVQ6 151 aa14.4□□□□□ -0.1
HOXD9-201ENST00000249499 A0A1B0GW54 56 aa14.4□□□□□ -0.1
HOXD9-201ENST00000249499 ATOX1O00244 68 aa14.39□□□□□ -0.11
HOXD9-201ENST00000249499 TNP2Q05952 138 aa14.39□□□□□ -0.11
HOXD9-201ENST00000249499 KMT2CQ8NEZ4 4911 aaKnown RBP14.39□□□□□ -0.11
HOXD9-201ENST00000249499 H0Y9J4 135 aa14.38□□□□□ -0.11
HOXD9-201ENST00000249499 ERC2-IT1O76042 136 aa14.38□□□□□ -0.11
HOXD9-201ENST00000249499 FAM19A1Q7Z5A9 133 aa14.38□□□□□ -0.11
HOXD9-201ENST00000249499 ST20-AS1Q8NBB2 130 aa14.38□□□□□ -0.11
HOXD9-201ENST00000249499 CXCL6P80162 114 aa14.35□□□□□ -0.11
HOXD9-201ENST00000249499 PHF5AQ7RTV0 110 aaKnown RBP14.35□□□□□ -0.11
HOXD9-201ENST00000249499 EPM2AB3EWF7 344 aa14.35□□□□□ -0.11
HOXD9-201ENST00000249499 CCDC179H3BU77 68 aa14.33□□□□□ -0.11
HOXD9-201ENST00000249499 A0A087WVE0 104 aa14.32□□□□□ -0.12
HOXD9-201ENST00000249499 C3orf84H3BNL1 204 aa14.32□□□□□ -0.12
HOXD9-201ENST00000249499 SPACA4Q8TDM5 124 aa14.31□□□□□ -0.12
HOXD9-201ENST00000249499 HAMPP81172 84 aa14.31□□□□□ -0.12
HOXD9-201ENST00000249499 PRLHP81277 87 aa14.31□□□□□ -0.12
HOXD9-201ENST00000249499 FUSP35637 526 aaKnown RBP eCLIP14.29□□□□□ -0.12
HOXD9-201ENST00000249499 C3orf22Q8N5N4 141 aa14.29□□□□□ -0.12
HOXD9-201ENST00000249499 C1orf137Q5JT78 98 aa14.29□□□□□ -0.12
HOXD9-201ENST00000249499 SMIM29Q86T20 159 aa14.28□□□□□ -0.12
HOXD9-201ENST00000249499 C1orf134Q5TEV5 83 aa14.27□□□□□ -0.12
HOXD9-201ENST00000249499 SACSQ9NZJ4 4579 aa14.27□□□□□ -0.13
HOXD9-201ENST00000249499 UQCRQO14949 82 aa14.27□□□□□ -0.13
HOXD9-201ENST00000249499 KRTAP11-1Q8IUC1 163 aa14.27□□□□□ -0.13
HOXD9-201ENST00000249499 F8WEM9 126 aa14.25□□□□□ -0.13
HOXD9-201ENST00000249499 PANO1I0J062 215 aa14.25□□□□□ -0.13
HOXD9-201ENST00000249499 RTL8CO15255 209 aa14.25□□□□□ -0.13
HOXD9-201ENST00000249499 HIGD2AQ9BW72 106 aa14.25□□□□□ -0.13
HOXD9-201ENST00000249499 Q8NBF4 154 aa14.25□□□□□ -0.13
HOXD9-201ENST00000249499 IGLV8-61A0A075B6I0 122 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 BCE1O60756 84 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 COX7CP15954 63 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 SPRR1BP22528 89 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 DPH3Q96FX2 82 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.23□□□□□ -0.13
HOXD9-201ENST00000249499 HYDINQ4G0P3 5121 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 A0A1W2PNM2 257 aa14.23□□□□□ -0.13
HOXD9-201ENST00000249499 NREPQ16612 68 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms