RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 Q6ZRP5 223 aa8.37□□□□□ -1.07
HIF3A-201ENST00000244302 C2orf48Q96LS8 159 aa8.37□□□□□ -1.07
HIF3A-201ENST00000244302 ORMDL1Q9P0S3 153 aa8.37□□□□□ -1.07
HIF3A-201ENST00000244302 RYR3Q15413 4870 aa8.37□□□□□ -1.07
HIF3A-201ENST00000244302 Q6JHZ5 121 aa8.36□□□□□ -1.07
HIF3A-201ENST00000244302 UQCRQO14949 82 aa8.36□□□□□ -1.07
HIF3A-201ENST00000244302 HIST1H4AP62805 103 aaKnown RBP8.35□□□□□ -1.07
HIF3A-201ENST00000244302 C3orf22Q8N5N4 141 aa8.35□□□□□ -1.07
HIF3A-201ENST00000244302 C1orf134Q5TEV5 83 aa8.35□□□□□ -1.07
HIF3A-201ENST00000244302 C14orf132Q9NPU4 83 aa8.35□□□□□ -1.07
HIF3A-201ENST00000244302 ATOX1O00244 68 aa8.34□□□□□ -1.07
HIF3A-201ENST00000244302 TNP2Q05952 138 aa8.34□□□□□ -1.07
HIF3A-201ENST00000244302 A0A087WTM6 91 aa8.33□□□□□ -1.08
HIF3A-201ENST00000244302 JMJD7-PLA2G4BH0Y9G9 81 aa8.33□□□□□ -1.08
HIF3A-201ENST00000244302 RTL8CO15255 209 aa8.33□□□□□ -1.08
HIF3A-201ENST00000244302 C9orf129Q5T035 196 aaKnown RBP8.32□□□□□ -1.08
HIF3A-201ENST00000244302 FAM168BA1KXE4 195 aa8.32□□□□□ -1.08
HIF3A-201ENST00000244302 NDUFC2-KCTD14E9PQ53 114 aa8.32□□□□□ -1.08
HIF3A-201ENST00000244302 RPL18AQ02543 176 aaKnown RBP8.32□□□□□ -1.08
HIF3A-201ENST00000244302 S100A7L2Q5SY68 101 aa8.32□□□□□ -1.08
HIF3A-201ENST00000244302 C9orf153Q5TBE3 101 aa8.32□□□□□ -1.08
HIF3A-201ENST00000244302 DNAH8Q96JB1 4490 aa8.31□□□□□ -1.08
HIF3A-201ENST00000244302 PKHD1P08F94 4074 aa8.31□□□□□ -1.08
HIF3A-201ENST00000244302 TMEM256-PLSCR3K7ERE1 68 aa8.31□□□□□ -1.08
HIF3A-201ENST00000244302 COX7CP15954 63 aa8.31□□□□□ -1.08
HIF3A-201ENST00000244302 Q8N814 137 aa8.31□□□□□ -1.08
HIF3A-201ENST00000244302 CCKP06307 115 aa8.3□□□□□ -1.08
HIF3A-201ENST00000244302 NCR3O14931 201 aa8.3□□□□□ -1.08
HIF3A-201ENST00000244302 LINC00846Q9NV44 126 aa8.3□□□□□ -1.08
HIF3A-201ENST00000244302 CHTF8P0CG12 524 aa8.29□□□□□ -1.08
HIF3A-201ENST00000244302 ATP5EP2Q5VTU8 51 aa8.29□□□□□ -1.08
HIF3A-201ENST00000244302 IGKV2-24A0A0C4DH68 120 aa8.29□□□□□ -1.08
HIF3A-201ENST00000244302 KRTAP7-1Q8IUC3 87 aa8.29□□□□□ -1.08
HIF3A-201ENST00000244302 PANO1I0J062 215 aa8.28□□□□□ -1.08
HIF3A-201ENST00000244302 CNBPP62633 177 aaKnown RBP8.28□□□□□ -1.08
HIF3A-201ENST00000244302 SERTAD4-AS1Q5TG53 156 aa8.28□□□□□ -1.08
HIF3A-201ENST00000244302 A0A096LNI7 61 aa8.27□□□□□ -1.08
HIF3A-201ENST00000244302 LCE6AA0A183 80 aa8.27□□□□□ -1.08
HIF3A-201ENST00000244302 CRYGAP11844 174 aa8.27□□□□□ -1.09
HIF3A-201ENST00000244302 H3BQ85 93 aa8.26□□□□□ -1.09
HIF3A-201ENST00000244302 KRTAP10-2P60368 255 aa8.26□□□□□ -1.09
HIF3A-201ENST00000244302 SMIM20Q8N5G0 67 aa8.26□□□□□ -1.09
HIF3A-201ENST00000244302 F8WDY8 70 aa8.25□□□□□ -1.09
HIF3A-201ENST00000244302 IGKV3D-7A0A0C4DH55 119 aa8.24□□□□□ -1.09
HIF3A-201ENST00000244302 TLX1NBP0CAT3 122 aa8.24□□□□□ -1.09
HIF3A-201ENST00000244302 C9orf163Q8N9P6 203 aa8.24□□□□□ -1.09
HIF3A-201ENST00000244302 VPREB1P12018 145 aa8.24□□□□□ -1.09
HIF3A-201ENST00000244302 C14orf177Q52M58 125 aa8.24□□□□□ -1.09
HIF3A-201ENST00000244302 A0A1W2PNN7 141 aa8.23□□□□□ -1.09
HIF3A-201ENST00000244302 LINC00575Q6W349 94 aa8.23□□□□□ -1.09
HIF3A-201ENST00000244302 LRP1BQ9NZR2 4599 aa8.23□□□□□ -1.09
HIF3A-201ENST00000244302 LOC107984640A0A0U1RRK4 108 aa8.23□□□□□ -1.09
HIF3A-201ENST00000244302 C6orf99Q4VX62 202 aa8.23□□□□□ -1.09
HIF3A-201ENST00000244302 SERP2Q8N6R1 65 aa8.23□□□□□ -1.09
HIF3A-201ENST00000244302 DYNC1H1Q14204 4646 aaKnown RBP8.22□□□□□ -1.09
HIF3A-201ENST00000244302 TRBV10-3A0A0K0K1G6 114 aa8.22□□□□□ -1.09
HIF3A-201ENST00000244302 FAM19A5Q7Z5A7 132 aaPredicted RBP8.22□□□□□ -1.09
HIF3A-201ENST00000244302 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.21□□□□□ -1.09
HIF3A-201ENST00000244302 LOC110117498A0A087WWA1 95 aa8.2□□□□□ -1.1
HIF3A-201ENST00000244302 hADV29S1A0JD25 119 aa8.2□□□□□ -1.1
HIF3A-201ENST00000244302 IGLV6-57P01721 117 aa8.2□□□□□ -1.1
HIF3A-201ENST00000244302 UBL5Q9BZL1 73 aa8.2□□□□□ -1.1
HIF3A-201ENST00000244302 RPL37AP8A6NKH3 93 aa8.19□□□□□ -1.1
HIF3A-201ENST00000244302 C16orf90A8MZG2 172 aa8.19□□□□□ -1.1
HIF3A-201ENST00000244302 IGLV5-52A0A0A0MRZ9 124 aa8.18□□□□□ -1.1
HIF3A-201ENST00000244302 PDE6GP18545 87 aa8.18□□□□□ -1.1
HIF3A-201ENST00000244302 GHRHP01286 108 aa8.18□□□□□ -1.1
HIF3A-201ENST00000244302 RBM3P98179 157 aaKnown RBP8.18□□□□□ -1.1
HIF3A-201ENST00000244302 C7orf33Q8WU49 177 aa8.18□□□□□ -1.1
HIF3A-201ENST00000244302 SRRM2Q9UQ35 2752 aaKnown RBP8.18□□□□□ -1.1
HIF3A-201ENST00000244302 HAMPP81172 84 aa8.17□□□□□ -1.1
HIF3A-201ENST00000244302 Q6ZQT0 140 aa8.17□□□□□ -1.1
HIF3A-201ENST00000244302 KRTAP11-1Q8IUC1 163 aa8.17□□□□□ -1.1
HIF3A-201ENST00000244302 A0A087WVE0 104 aa8.16□□□□□ -1.1
HIF3A-201ENST00000244302 TMEM258P61165 79 aa8.16□□□□□ -1.1
HIF3A-201ENST00000244302 FAM30AQ9NZY2 134 aa8.16□□□□□ -1.1
HIF3A-201ENST00000244302 J3KT08 172 aa8.15□□□□□ -1.1
HIF3A-201ENST00000244302 BCE1O60756 84 aa8.15□□□□□ -1.1
HIF3A-201ENST00000244302 DPH3Q96FX2 82 aa8.15□□□□□ -1.1
HIF3A-201ENST00000244302 TRBV7-6A0A0J9YX20 115 aa8.15□□□□□ -1.11
HIF3A-201ENST00000244302 RPS28P62857 69 aaKnown RBP8.15□□□□□ -1.11
HIF3A-201ENST00000244302 PHF5AQ7RTV0 110 aaKnown RBP8.15□□□□□ -1.11
HIF3A-201ENST00000244302 M0R378 163 aa8.14□□□□□ -1.11
HIF3A-201ENST00000244302 NKAPP1Q8N9T2 125 aa8.14□□□□□ -1.11
HIF3A-201ENST00000244302 DIRC1Q969H9 104 aa8.14□□□□□ -1.11
HIF3A-201ENST00000244302 TRAV23DV6A0A075B6W5 121 aa8.14□□□□□ -1.11
HIF3A-201ENST00000244302 LAMTOR3Q9UHA4 124 aa8.14□□□□□ -1.11
HIF3A-201ENST00000244302 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.13□□□□□ -1.11
HIF3A-201ENST00000244302 DSCR8Q96T75 97 aa8.13□□□□□ -1.11
HIF3A-201ENST00000244302 KRTAP10-1P60331 282 aa8.12□□□□□ -1.11
HIF3A-201ENST00000244302 PLA2G2DQ9UNK4 145 aa8.12□□□□□ -1.11
HIF3A-201ENST00000244302 SPACA4Q8TDM5 124 aa8.12□□□□□ -1.11
HIF3A-201ENST00000244302 MRPL55Q7Z7F7 128 aaKnown RBP8.11□□□□□ -1.11
HIF3A-201ENST00000244302 Q6ZQY7 126 aa8.11□□□□□ -1.11
HIF3A-201ENST00000244302 IGLV1-50A0A075B6I6 118 aa8.09□□□□□ -1.11
HIF3A-201ENST00000244302 IGLV5-37A0A075B6J1 123 aa8.09□□□□□ -1.11
HIF3A-201ENST00000244302 COX7BP24311 80 aa8.09□□□□□ -1.11
HIF3A-201ENST00000244302 ZNF73O43830 326 aaPredicted RBP8.09□□□□□ -1.11
HIF3A-201ENST00000244302 ELOF1P60002 83 aaKnown RBP8.09□□□□□ -1.11
HIF3A-201ENST00000244302 CXCL6P80162 114 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms