RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SMIM13P0DJ93 91 aa12.59□□□□□ -0.39
PTCD3-220ENST00000627371 AKR1D1P51857 326 aa12.59□□□□□ -0.39
PTCD3-220ENST00000627371 C22orf24Q9Y442 160 aa12.59□□□□□ -0.39
PTCD3-220ENST00000627371 A0A0U1RRA0 63 aa12.58□□□□□ -0.4
PTCD3-220ENST00000627371 TP73-AS1Q9UF72 201 aa12.58□□□□□ -0.4
PTCD3-220ENST00000627371 HNRNPA3P51991 378 aaKnown RBP12.57□□□□□ -0.4
PTCD3-220ENST00000627371 PSORS1C2Q9UIG4 136 aa12.57□□□□□ -0.4
PTCD3-220ENST00000627371 MYCBP2O75592 4640 aa12.57□□□□□ -0.4
PTCD3-220ENST00000627371 IGLV5-37A0A075B6J1 123 aa12.56□□□□□ -0.4
PTCD3-220ENST00000627371 UBE2BP63146 152 aa12.56□□□□□ -0.4
PTCD3-220ENST00000627371 LBHQ53QV2 105 aaPredicted RBP12.55□□□□□ -0.4
PTCD3-220ENST00000627371 MRPL55Q7Z7F7 128 aaKnown RBP12.55□□□□□ -0.4
PTCD3-220ENST00000627371 KRTAP11-1Q8IUC1 163 aa12.55□□□□□ -0.4
PTCD3-220ENST00000627371 ATOH7Q8N100 152 aa12.54□□□□□ -0.4
PTCD3-220ENST00000627371 MIR7-3HGQ8N6C7 128 aa12.54□□□□□ -0.4
PTCD3-220ENST00000627371 IGKV2D-26A0A0A0MRZ7 120 aa12.53□□□□□ -0.4
PTCD3-220ENST00000627371 VPREB1P12018 145 aa12.53□□□□□ -0.4
PTCD3-220ENST00000627371 NKAPP1Q8N9T2 125 aa12.53□□□□□ -0.4
PTCD3-220ENST00000627371 RPL24P83731 157 aaKnown RBP12.52□□□□□ -0.41
PTCD3-220ENST00000627371 C1orf137Q5JT78 98 aa12.51□□□□□ -0.41
PTCD3-220ENST00000627371 A0A0J9YXY3 114 aa12.5□□□□□ -0.41
PTCD3-220ENST00000627371 ANKRD39Q53RE8 183 aa12.5□□□□□ -0.41
PTCD3-220ENST00000627371 Q8NDZ9 215 aa12.5□□□□□ -0.41
PTCD3-220ENST00000627371 LINC00167Q96N53 147 aa12.5□□□□□ -0.41
PTCD3-220ENST00000627371 ZNF815PA8K554 130 aa12.48□□□□□ -0.41
PTCD3-220ENST00000627371 DAND5Q8N907 189 aa12.48□□□□□ -0.41
PTCD3-220ENST00000627371 FAT3Q8TDW7 4589 aa12.47□□□□□ -0.41
PTCD3-220ENST00000627371 GAGE10A6NGK3 116 aa12.47□□□□□ -0.41
PTCD3-220ENST00000627371 TTTY13Q9BZ97 58 aa12.47□□□□□ -0.41
PTCD3-220ENST00000627371 LRP1Q07954 4544 aaKnown RBP12.46□□□□□ -0.41
PTCD3-220ENST00000627371 BOD1L2Q8IYS8 172 aa12.46□□□□□ -0.41
PTCD3-220ENST00000627371 LOC107984156A0A0G2JMH3 177 aa12.45□□□□□ -0.42
PTCD3-220ENST00000627371 RPL37AP8A6NKH3 93 aa12.45□□□□□ -0.42
PTCD3-220ENST00000627371 IGLV7-43P04211 117 aa12.45□□□□□ -0.42
PTCD3-220ENST00000627371 SRSF9Q13242 221 aaKnown RBP eCLIP12.45□□□□□ -0.42
PTCD3-220ENST00000627371 SPINK6Q6UWN8 80 aa12.45□□□□□ -0.42
PTCD3-220ENST00000627371 ARL17AQ8IVW1 177 aa12.45□□□□□ -0.42
PTCD3-220ENST00000627371 TIMM17BO60830 172 aa12.44□□□□□ -0.42
PTCD3-220ENST00000627371 ADAMTSL4-AS1Q5T5F5 129 aa12.43□□□□□ -0.42
PTCD3-220ENST00000627371 SCGB1D1O95968 90 aa12.42□□□□□ -0.42
PTCD3-220ENST00000627371 LITAFQ99732 161 aa12.42□□□□□ -0.42
PTCD3-220ENST00000627371 MIEN1Q9BRT3 115 aa12.42□□□□□ -0.42
PTCD3-220ENST00000627371 IGLV1-50A0A075B6I6 118 aa12.41□□□□□ -0.42
PTCD3-220ENST00000627371 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
PTCD3-220ENST00000627371 HSBP1L1C9JCN9 74 aa12.41□□□□□ -0.42
PTCD3-220ENST00000627371 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
PTCD3-220ENST00000627371 KRTAP29-1A8MX34 341 aaPredicted RBP12.4□□□□□ -0.42
PTCD3-220ENST00000627371 M0R378 163 aa12.4□□□□□ -0.42
PTCD3-220ENST00000627371 PCP2Q8IVA1 136 aa12.4□□□□□ -0.42
PTCD3-220ENST00000627371 OXTP01178 125 aa12.39□□□□□ -0.43
PTCD3-220ENST00000627371 TMA7Q9Y2S6 64 aaKnown RBP12.39□□□□□ -0.43
PTCD3-220ENST00000627371 NCR3O14931 201 aa12.38□□□□□ -0.43
PTCD3-220ENST00000627371 BCE1O60756 84 aa12.38□□□□□ -0.43
PTCD3-220ENST00000627371 SOSTDC1Q6X4U4 206 aa12.38□□□□□ -0.43
PTCD3-220ENST00000627371 SCGB1D4Q6XE38 83 aa12.38□□□□□ -0.43
PTCD3-220ENST00000627371 NPC2P61916 151 aa12.37□□□□□ -0.43
PTCD3-220ENST00000627371 EIF4EBP3O60516 100 aaPredicted RBP12.36□□□□□ -0.43
PTCD3-220ENST00000627371 NDUFC2O95298 119 aa12.36□□□□□ -0.43
PTCD3-220ENST00000627371 DMBT1Q9UGM3 2413 aaPredicted RBP12.35□□□□□ -0.43
PTCD3-220ENST00000627371 TMEM238C9JI98 176 aa12.35□□□□□ -0.43
PTCD3-220ENST00000627371 LINC00308Q8TCZ7 52 aa12.35□□□□□ -0.43
PTCD3-220ENST00000627371 DIRC1Q969H9 104 aa12.35□□□□□ -0.43
PTCD3-220ENST00000627371 TRBV10-2A0A0K0K1G8 114 aa12.34□□□□□ -0.43
PTCD3-220ENST00000627371 ZNF861PO60384 105 aa12.34□□□□□ -0.43
PTCD3-220ENST00000627371 SPANXB1Q9NS25 103 aaPredicted RBP12.34□□□□□ -0.43
PTCD3-220ENST00000627371 REG3GQ6UW15 175 aa12.33□□□□□ -0.44
PTCD3-220ENST00000627371 SPANXDQ9BXN6 97 aa12.33□□□□□ -0.44
PTCD3-220ENST00000627371 TMEM126AQ9H061 195 aa12.33□□□□□ -0.44
PTCD3-220ENST00000627371 SPANXCQ9NY87 97 aa12.33□□□□□ -0.44
PTCD3-220ENST00000627371 H0Y9J4 135 aa12.32□□□□□ -0.44
PTCD3-220ENST00000627371 J3QL48 77 aa12.32□□□□□ -0.44
PTCD3-220ENST00000627371 JOSD1Q15040 202 aaPredicted RBP12.32□□□□□ -0.44
PTCD3-220ENST00000627371 RPL28P46779 137 aaKnown RBP12.31□□□□□ -0.44
PTCD3-220ENST00000627371 TRBV10-3A0A0K0K1G6 114 aa12.3□□□□□ -0.44
PTCD3-220ENST00000627371 PRYO14603 147 aa12.29□□□□□ -0.44
PTCD3-220ENST00000627371 UBE2AP49459 152 aa12.29□□□□□ -0.44
PTCD3-220ENST00000627371 Q6ZVH6 145 aa12.29□□□□□ -0.44
PTCD3-220ENST00000627371 KRTAP13-1Q8IUC0 172 aa12.29□□□□□ -0.44
PTCD3-220ENST00000627371 KCNQ1DNQ9H478 68 aa12.29□□□□□ -0.44
PTCD3-220ENST00000627371 LINC01600Q96MT4 127 aa12.28□□□□□ -0.44
PTCD3-220ENST00000627371 DDTP30046 118 aa12.27□□□□□ -0.45
PTCD3-220ENST00000627371 FAM19A1Q7Z5A9 133 aa12.27□□□□□ -0.45
PTCD3-220ENST00000627371 COPS9Q8WXC6 57 aa12.27□□□□□ -0.45
PTCD3-220ENST00000627371 PPDPFQ9H3Y8 114 aa12.27□□□□□ -0.45
PTCD3-220ENST00000627371 TNXBP22105 4242 aa12.26□□□□□ -0.45
PTCD3-220ENST00000627371 IFITM1P13164 125 aa12.26□□□□□ -0.45
PTCD3-220ENST00000627371 IGLV6-57P01721 117 aa12.25□□□□□ -0.45
PTCD3-220ENST00000627371 COX8AP10176 69 aa12.25□□□□□ -0.45
PTCD3-220ENST00000627371 SPRR1AP35321 89 aa12.25□□□□□ -0.45
PTCD3-220ENST00000627371 S100A12P80511 92 aa12.25□□□□□ -0.45
PTCD3-220ENST00000627371 PRLHP81277 87 aa12.25□□□□□ -0.45
PTCD3-220ENST00000627371 S100A7L2Q5SY68 101 aa12.25□□□□□ -0.45
PTCD3-220ENST00000627371 VAMP8Q9BV40 100 aa12.24□□□□□ -0.45
PTCD3-220ENST00000627371 PAM16Q9Y3D7 125 aa12.24□□□□□ -0.45
PTCD3-220ENST00000627371 MT1HL1P0DM35 61 aa12.23□□□□□ -0.45
PTCD3-220ENST00000627371 SPATA45Q537H7 98 aa12.23□□□□□ -0.45
PTCD3-220ENST00000627371 LINC00337Q8N6G1 96 aa12.23□□□□□ -0.45
PTCD3-220ENST00000627371 PYY3Q5JQD4 70 aa12.22□□□□□ -0.45
PTCD3-220ENST00000627371 HERC1Q15751 4861 aa12.21□□□□□ -0.45
PTCD3-220ENST00000627371 KRTAP4-16G5E9R7 235 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms