RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PLA2G2DQ9UNK4 145 aa11.96□□□□□ -0.49
SQSTM1-216ENST00000626660 MIR7-3HGQ8N6C7 128 aa11.95□□□□□ -0.5
SQSTM1-216ENST00000626660 A0A0J9YXY3 114 aa11.94□□□□□ -0.5
SQSTM1-216ENST00000626660 KRTAP7-1Q8IUC3 87 aa11.94□□□□□ -0.5
SQSTM1-216ENST00000626660 FAT1Q14517 4588 aa11.93□□□□□ -0.5
SQSTM1-216ENST00000626660 LBHQ53QV2 105 aaPredicted RBP11.93□□□□□ -0.5
SQSTM1-216ENST00000626660 NKAPP1Q8N9T2 125 aa11.93□□□□□ -0.5
SQSTM1-216ENST00000626660 C22orf24Q9Y442 160 aa11.93□□□□□ -0.5
SQSTM1-216ENST00000626660 UBE2BP63146 152 aa11.92□□□□□ -0.5
SQSTM1-216ENST00000626660 RPL24P83731 157 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-216ENST00000626660 TTTY13Q9BZ97 58 aa11.92□□□□□ -0.5
SQSTM1-216ENST00000626660 TP73-AS1Q9UF72 201 aa11.92□□□□□ -0.5
SQSTM1-216ENST00000626660 IGLV5-37A0A075B6J1 123 aa11.91□□□□□ -0.5
SQSTM1-216ENST00000626660 MRPL55Q7Z7F7 128 aaKnown RBP11.9□□□□□ -0.5
SQSTM1-216ENST00000626660 TIMM17BO60830 172 aa11.89□□□□□ -0.51
SQSTM1-216ENST00000626660 SCGB1D4Q6XE38 83 aa11.89□□□□□ -0.51
SQSTM1-216ENST00000626660 DAND5Q8N907 189 aa11.89□□□□□ -0.51
SQSTM1-216ENST00000626660 MIEN1Q9BRT3 115 aa11.89□□□□□ -0.51
SQSTM1-216ENST00000626660 VPREB1P12018 145 aa11.88□□□□□ -0.51
SQSTM1-216ENST00000626660 PRR3P79522 188 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-216ENST00000626660 JOSD1Q15040 202 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-216ENST00000626660 BOD1L2Q8IYS8 172 aa11.88□□□□□ -0.51
SQSTM1-216ENST00000626660 PCP2Q8IVA1 136 aa11.87□□□□□ -0.51
SQSTM1-216ENST00000626660 KRTAP10-4P60372 401 aaPredicted RBP11.86□□□□□ -0.51
SQSTM1-216ENST00000626660 SRRM2Q9UQ35 2752 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-216ENST00000626660 GAGE10A6NGK3 116 aa11.85□□□□□ -0.51
SQSTM1-216ENST00000626660 INAFM2P0DMQ5 153 aa11.85□□□□□ -0.51
SQSTM1-216ENST00000626660 ADAMTSL4-AS1Q5T5F5 129 aa11.85□□□□□ -0.51
SQSTM1-216ENST00000626660 LINC00167Q96N53 147 aa11.85□□□□□ -0.51
SQSTM1-216ENST00000626660 PSORS1C2Q9UIG4 136 aa11.85□□□□□ -0.51
SQSTM1-216ENST00000626660 VPS13BQ7Z7G8 4022 aa11.84□□□□□ -0.51
SQSTM1-216ENST00000626660 LOC107984156A0A0G2JMH3 177 aa11.84□□□□□ -0.51
SQSTM1-216ENST00000626660 TMEM238C9JI98 176 aa11.84□□□□□ -0.51
SQSTM1-216ENST00000626660 ARL17AQ8IVW1 177 aa11.84□□□□□ -0.51
SQSTM1-216ENST00000626660 LITAFQ99732 161 aa11.83□□□□□ -0.52
SQSTM1-216ENST00000626660 VAMP8Q9BV40 100 aa11.83□□□□□ -0.52
SQSTM1-216ENST00000626660 NPC2P61916 151 aa11.82□□□□□ -0.52
SQSTM1-216ENST00000626660 C1orf137Q5JT78 98 aa11.82□□□□□ -0.52
SQSTM1-216ENST00000626660 KRTAP11-1Q8IUC1 163 aa11.82□□□□□ -0.52
SQSTM1-216ENST00000626660 Q8NDZ9 215 aa11.82□□□□□ -0.52
SQSTM1-216ENST00000626660 RPL37AP8A6NKH3 93 aa11.81□□□□□ -0.52
SQSTM1-216ENST00000626660 M0R378 163 aa11.81□□□□□ -0.52
SQSTM1-216ENST00000626660 LINC00308Q8TCZ7 52 aa11.8□□□□□ -0.52
SQSTM1-216ENST00000626660 PAM16Q9Y3D7 125 aa11.8□□□□□ -0.52
SQSTM1-216ENST00000626660 SPATA45Q537H7 98 aa11.79□□□□□ -0.52
SQSTM1-216ENST00000626660 COPS9Q8WXC6 57 aa11.79□□□□□ -0.52
SQSTM1-216ENST00000626660 HERC1Q15751 4861 aa11.79□□□□□ -0.52
SQSTM1-216ENST00000626660 IGKV2-28A0A075B6P5 120 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 NCR3O14931 201 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 IGKV2D-28P01615 120 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 PYY3Q5JQD4 70 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 SOSTDC1Q6X4U4 206 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 SPANXDQ9BXN6 97 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 SPANXCQ9NY87 97 aa11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 FLG2Q5D862 2391 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-216ENST00000626660 NDUFC2O95298 119 aa11.77□□□□□ -0.53
SQSTM1-216ENST00000626660 COX8AP10176 69 aa11.77□□□□□ -0.53
SQSTM1-216ENST00000626660 Q6ZVH6 145 aa11.77□□□□□ -0.53
SQSTM1-216ENST00000626660 SPANXB1Q9NS25 103 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-216ENST00000626660 IGLV1-50A0A075B6I6 118 aa11.76□□□□□ -0.53
SQSTM1-216ENST00000626660 TRBV10-2A0A0K0K1G8 114 aa11.75□□□□□ -0.53
SQSTM1-216ENST00000626660 IGLV7-43P04211 117 aa11.75□□□□□ -0.53
SQSTM1-216ENST00000626660 IFITM1P13164 125 aa11.75□□□□□ -0.53
SQSTM1-216ENST00000626660 HNRNPA3P51991 378 aaKnown RBP11.75□□□□□ -0.53
SQSTM1-216ENST00000626660 EIF4EBP3O60516 100 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-216ENST00000626660 DLEU1O43261 78 aa11.73□□□□□ -0.53
SQSTM1-216ENST00000626660 SRSF9Q13242 221 aaKnown RBP eCLIP11.73□□□□□ -0.53
SQSTM1-216ENST00000626660 BCE1O60756 84 aa11.72□□□□□ -0.53
SQSTM1-216ENST00000626660 S100A12P80511 92 aa11.72□□□□□ -0.53
SQSTM1-216ENST00000626660 REG3GQ6UW15 175 aa11.72□□□□□ -0.53
SQSTM1-216ENST00000626660 SPINK6Q6UWN8 80 aa11.72□□□□□ -0.53
SQSTM1-216ENST00000626660 C14orf144Q96I85 54 aa11.72□□□□□ -0.53
SQSTM1-216ENST00000626660 S100A7L2Q5SY68 101 aa11.71□□□□□ -0.53
SQSTM1-216ENST00000626660 SLC25A34Q6PIV7 304 aa11.71□□□□□ -0.53
SQSTM1-216ENST00000626660 PPDPFQ9H3Y8 114 aa11.71□□□□□ -0.53
SQSTM1-216ENST00000626660 TRBV10-3A0A0K0K1G6 114 aa11.7□□□□□ -0.54
SQSTM1-216ENST00000626660 DDTP30046 118 aa11.7□□□□□ -0.54
SQSTM1-216ENST00000626660 PRYO14603 147 aa11.69□□□□□ -0.54
SQSTM1-216ENST00000626660 MUSTN1Q8IVN3 82 aa11.69□□□□□ -0.54
SQSTM1-216ENST00000626660 TMEM126AQ9H061 195 aa11.69□□□□□ -0.54
SQSTM1-216ENST00000626660 RPL28P46779 137 aaKnown RBP11.68□□□□□ -0.54
SQSTM1-216ENST00000626660 LINC00518Q8N0U6 118 aa11.68□□□□□ -0.54
SQSTM1-216ENST00000626660 DMBT1Q9UGM3 2413 aaPredicted RBP11.68□□□□□ -0.54
SQSTM1-216ENST00000626660 UBE2AP49459 152 aa11.67□□□□□ -0.54
SQSTM1-216ENST00000626660 DIRC1Q969H9 104 aa11.67□□□□□ -0.54
SQSTM1-216ENST00000626660 ZNF861PO60384 105 aa11.66□□□□□ -0.54
SQSTM1-216ENST00000626660 KCNQ1DNQ9H478 68 aa11.66□□□□□ -0.54
SQSTM1-216ENST00000626660 CBY1Q9Y3M2 126 aa11.66□□□□□ -0.54
SQSTM1-216ENST00000626660 PKHD1L1Q86WI1 4243 aa11.65□□□□□ -0.54
SQSTM1-216ENST00000626660 IGLV6-57P01721 117 aa11.65□□□□□ -0.54
SQSTM1-216ENST00000626660 FAM19A1Q7Z5A9 133 aa11.65□□□□□ -0.54
SQSTM1-216ENST00000626660 OR13C6PQ8NH95 151 aa11.65□□□□□ -0.54
SQSTM1-216ENST00000626660 HIST1H4GQ99525 98 aa11.65□□□□□ -0.54
SQSTM1-216ENST00000626660 HIGD1BQ9P298 99 aa11.64□□□□□ -0.55
SQSTM1-216ENST00000626660 J3QL48 77 aa11.63□□□□□ -0.55
SQSTM1-216ENST00000626660 ETDCA0A1B0GVM5 59 aa11.62□□□□□ -0.55
SQSTM1-216ENST00000626660 H0Y9J4 135 aa11.62□□□□□ -0.55
SQSTM1-216ENST00000626660 TRAV23DV6A0A075B6W5 121 aa11.61□□□□□ -0.55
SQSTM1-216ENST00000626660 LINC00337Q8N6G1 96 aa11.61□□□□□ -0.55
SQSTM1-216ENST00000626660 OXTP01178 125 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms