RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PLEKHB2Q96CS7 222 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 ZNF625Q96I27 306 aaPredicted RBP4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 TIMM17AQ99595 171 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 HIGD2AQ9BW72 106 aa4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 TMA7Q9Y2S6 64 aaKnown RBP4.91□□□□□ -1.62
SHKBP1-220ENST00000599716 TINCRA0A1B0GVN0 87 aa4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 RAB14P61106 215 aa4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 SEC11AP67812 179 aa4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 LCE4AQ5TA78 99 aa4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 ERASQ7Z444 233 aa4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 SND1-IT1Q9HBX3 110 aa4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 NXT2Q9NPJ8 142 aaKnown RBP4.9□□□□□ -1.63
SHKBP1-220ENST00000599716 IGLV5-45A0A087WSX0 123 aa4.89□□□□□ -1.63
SHKBP1-220ENST00000599716 NPSP0C0P6 89 aa4.89□□□□□ -1.63
SHKBP1-220ENST00000599716 PAPPA-AS1Q5QFB9 102 aa4.89□□□□□ -1.63
SHKBP1-220ENST00000599716 CBLN2Q8IUK8 224 aa4.89□□□□□ -1.63
SHKBP1-220ENST00000599716 CST9LQ9H4G1 147 aa4.89□□□□□ -1.63
SHKBP1-220ENST00000599716 CTAG1AP78358 180 aa4.88□□□□□ -1.63
SHKBP1-220ENST00000599716 KRTAP13-3Q3SY46 172 aa4.88□□□□□ -1.63
SHKBP1-220ENST00000599716 A0A0U1RRA0 63 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 K7EMI3 77 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 ATP5LO75964 103 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 MT-ND4LP03901 98 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 LINC00337Q8N6G1 96 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 Q8NBF4 154 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 SPRR4Q96PI1 79 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 ERG28Q9UKR5 140 aa4.87□□□□□ -1.63
SHKBP1-220ENST00000599716 NDUFA6P56556 154 aa4.86□□□□□ -1.63
SHKBP1-220ENST00000599716 ANAPC16Q96DE5 110 aa4.86□□□□□ -1.63
SHKBP1-220ENST00000599716 IGLV5-39A0A0G2JS06 123 aa4.85□□□□□ -1.63
SHKBP1-220ENST00000599716 ZNF22P17026 224 aaPredicted RBP4.85□□□□□ -1.63
SHKBP1-220ENST00000599716 S100A12P80511 92 aa4.85□□□□□ -1.63
SHKBP1-220ENST00000599716 PMVKQ15126 192 aa4.85□□□□□ -1.63
SHKBP1-220ENST00000599716 ASB16-AS1Q495Z4 193 aa4.85□□□□□ -1.63
SHKBP1-220ENST00000599716 MRPL18Q9H0U6 180 aaKnown RBP4.85□□□□□ -1.63
SHKBP1-220ENST00000599716 H3BRM9 83 aa4.84□□□□□ -1.63
SHKBP1-220ENST00000599716 CFC1BP0CG36 223 aa4.84□□□□□ -1.63
SHKBP1-220ENST00000599716 A0A096LNJ9 63 aa4.83□□□□□ -1.64
SHKBP1-220ENST00000599716 IGLC3P0DOY3 106 aa4.83□□□□□ -1.64
SHKBP1-220ENST00000599716 G0S2P27469 103 aa4.83□□□□□ -1.64
SHKBP1-220ENST00000599716 RPL24P83731 157 aaKnown RBP4.83□□□□□ -1.64
SHKBP1-220ENST00000599716 PMCHL1Q16048 86 aa4.83□□□□□ -1.64
SHKBP1-220ENST00000599716 LINC01546A6NGU7 62 aa4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 NCR3O14931 201 aa4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 CLLU1Q5K131 121 aa4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 SPAG11AQ6PDA7 123 aa4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 FP248Q71RG6 208 aaPredicted RBP4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 FA2HQ7L5A8 372 aa4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 SMCR5Q8TEV8 140 aa4.82□□□□□ -1.64
SHKBP1-220ENST00000599716 C11orf86A6NJI1 115 aa4.81□□□□□ -1.64
SHKBP1-220ENST00000599716 LINC00158P58513 81 aa4.81□□□□□ -1.64
SHKBP1-220ENST00000599716 URB1-AS1Q96HZ7 61 aa4.81□□□□□ -1.64
SHKBP1-220ENST00000599716 SMCO4Q9NRQ5 59 aa4.81□□□□□ -1.64
SHKBP1-220ENST00000599716 IGLV9-49A0A0B4J1Y8 123 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 ERC2-IT1O76042 136 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 MOBPQ13875 183 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 TMEM170BQ5T4T1 132 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 GAGE2AQ6NT46 116 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 COMMD7Q86VX2 200 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 GNB1LQ9BYB4 327 aa4.8□□□□□ -1.64
SHKBP1-220ENST00000599716 SMIM13P0DJ93 91 aa4.79□□□□□ -1.64
SHKBP1-220ENST00000599716 SEC61BP60468 96 aaKnown RBP4.79□□□□□ -1.64
SHKBP1-220ENST00000599716 FABP9Q0Z7S8 132 aa4.79□□□□□ -1.64
SHKBP1-220ENST00000599716 COX17Q14061 63 aa4.79□□□□□ -1.64
SHKBP1-220ENST00000599716 KRTAP19-2Q3LHN2 52 aa4.79□□□□□ -1.64
SHKBP1-220ENST00000599716 Q8N377 158 aa4.79□□□□□ -1.64
SHKBP1-220ENST00000599716 TRBV10-3A0A0K0K1G6 114 aa4.78□□□□□ -1.64
SHKBP1-220ENST00000599716 BAGE3Q86Y29 109 aa4.78□□□□□ -1.64
SHKBP1-220ENST00000599716 BOD1L2Q8IYS8 172 aa4.78□□□□□ -1.64
SHKBP1-220ENST00000599716 ZNF706Q9Y5V0 76 aaPredicted RBP4.78□□□□□ -1.64
SHKBP1-220ENST00000599716 ETDCA0A1B0GVM5 59 aa4.77□□□□□ -1.65
SHKBP1-220ENST00000599716 KRTAP4-16G5E9R7 235 aaPredicted RBP4.77□□□□□ -1.65
SHKBP1-220ENST00000599716 PRYO14603 147 aa4.77□□□□□ -1.65
SHKBP1-220ENST00000599716 SPINK1P00995 79 aa4.77□□□□□ -1.65
SHKBP1-220ENST00000599716 S100A6P06703 90 aa4.77□□□□□ -1.65
SHKBP1-220ENST00000599716 LINC00518Q8N0U6 118 aa4.77□□□□□ -1.65
SHKBP1-220ENST00000599716 SPRR1AP35321 89 aa4.76□□□□□ -1.65
SHKBP1-220ENST00000599716 MT1HP80294 61 aa4.76□□□□□ -1.65
SHKBP1-220ENST00000599716 LINC00483Q53H64 154 aa4.76□□□□□ -1.65
SHKBP1-220ENST00000599716 MIR7-3HGQ8N6C7 128 aa4.76□□□□□ -1.65
SHKBP1-220ENST00000599716 LINC01549A6NIU2 74 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 HBDP02042 147 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 MEIG1Q5JSS6 88 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 C18orf32Q8TCD1 76 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 Q9BRP9 147 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 KCNQ1DNQ9H478 68 aa4.75□□□□□ -1.65
SHKBP1-220ENST00000599716 TRAV9-1A0A075B6T8 112 aa4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 TMEM223A0PJW6 202 aa4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 TMEM218A2RU14 115 aa4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 B5MCH6 92 aa4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 LINC00614P0C842 121 aa4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 S100PP25815 95 aa4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 CHTOPQ9Y3Y2 248 aaKnown RBP4.74□□□□□ -1.65
SHKBP1-220ENST00000599716 C9orf92A6NGG3 77 aa4.73□□□□□ -1.65
SHKBP1-220ENST00000599716 KRTAP10-6P60371 365 aaPredicted RBP4.73□□□□□ -1.65
SHKBP1-220ENST00000599716 PCOTHQ58A44 107 aa4.73□□□□□ -1.65
SHKBP1-220ENST00000599716 C9orf153Q5TBE3 101 aa4.73□□□□□ -1.65
SHKBP1-220ENST00000599716 NDUFA12Q9UI09 145 aa4.73□□□□□ -1.65
SHKBP1-220ENST00000599716 IGLV8-61A0A075B6I0 122 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms