RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 IGLV5-37A0A075B6J1 123 aa12.62□□□□□ -0.39
PNKP-211ENST00000598020 C22orf24Q9Y442 160 aa12.62□□□□□ -0.39
PNKP-211ENST00000598020 PRR3P79522 188 aaKnown RBP12.61□□□□□ -0.39
PNKP-211ENST00000598020 IGKV2D-26A0A0A0MRZ7 120 aa12.6□□□□□ -0.39
PNKP-211ENST00000598020 A0A0U1RRA0 63 aa12.59□□□□□ -0.39
PNKP-211ENST00000598020 LBHQ53QV2 105 aaPredicted RBP12.59□□□□□ -0.39
PNKP-211ENST00000598020 ATOH7Q8N100 152 aa12.59□□□□□ -0.39
PNKP-211ENST00000598020 PCLOQ9Y6V0 5065 aa12.59□□□□□ -0.39
PNKP-211ENST00000598020 MIR7-3HGQ8N6C7 128 aa12.58□□□□□ -0.4
PNKP-211ENST00000598020 A0A0J9YXY3 114 aa12.57□□□□□ -0.4
PNKP-211ENST00000598020 VPREB1P12018 145 aa12.57□□□□□ -0.4
PNKP-211ENST00000598020 RPL24P83731 157 aaKnown RBP12.57□□□□□ -0.4
PNKP-211ENST00000598020 ANKRD39Q53RE8 183 aa12.57□□□□□ -0.4
PNKP-211ENST00000598020 MRPL55Q7Z7F7 128 aaKnown RBP12.57□□□□□ -0.4
PNKP-211ENST00000598020 PSORS1C2Q9UIG4 136 aa12.57□□□□□ -0.4
PNKP-211ENST00000598020 LOC107984156A0A0G2JMH3 177 aa12.56□□□□□ -0.4
PNKP-211ENST00000598020 KRTAP11-1Q8IUC1 163 aa12.56□□□□□ -0.4
PNKP-211ENST00000598020 ARL17AQ8IVW1 177 aa12.56□□□□□ -0.4
PNKP-211ENST00000598020 FLG2Q5D862 2391 aaPredicted RBP12.56□□□□□ -0.4
PNKP-211ENST00000598020 UBE2BP63146 152 aa12.55□□□□□ -0.4
PNKP-211ENST00000598020 NKAPP1Q8N9T2 125 aa12.55□□□□□ -0.4
PNKP-211ENST00000598020 HNRNPA3P51991 378 aaKnown RBP12.54□□□□□ -0.4
PNKP-211ENST00000598020 ZNF815PA8K554 130 aa12.53□□□□□ -0.4
PNKP-211ENST00000598020 Q8NDZ9 215 aa12.53□□□□□ -0.4
PNKP-211ENST00000598020 LINC00167Q96N53 147 aa12.53□□□□□ -0.4
PNKP-211ENST00000598020 TIMM17BO60830 172 aa12.52□□□□□ -0.41
PNKP-211ENST00000598020 TTTY13Q9BZ97 58 aa12.52□□□□□ -0.41
PNKP-211ENST00000598020 SCGB1D1O95968 90 aa12.51□□□□□ -0.41
PNKP-211ENST00000598020 SRSF9Q13242 221 aaKnown RBP eCLIP12.5□□□□□ -0.41
PNKP-211ENST00000598020 C1orf137Q5JT78 98 aa12.5□□□□□ -0.41
PNKP-211ENST00000598020 ADAMTSL4-AS1Q5T5F5 129 aa12.5□□□□□ -0.41
PNKP-211ENST00000598020 BOD1L2Q8IYS8 172 aa12.5□□□□□ -0.41
PNKP-211ENST00000598020 DAND5Q8N907 189 aa12.5□□□□□ -0.41
PNKP-211ENST00000598020 LITAFQ99732 161 aa12.5□□□□□ -0.41
PNKP-211ENST00000598020 HSBP1L1C9JCN9 74 aa12.49□□□□□ -0.41
PNKP-211ENST00000598020 GAGE10A6NGK3 116 aa12.47□□□□□ -0.41
PNKP-211ENST00000598020 IGLV7-43P04211 117 aa12.47□□□□□ -0.41
PNKP-211ENST00000598020 SPINK6Q6UWN8 80 aa12.47□□□□□ -0.41
PNKP-211ENST00000598020 PCP2Q8IVA1 136 aa12.47□□□□□ -0.41
PNKP-211ENST00000598020 TMA7Q9Y2S6 64 aaKnown RBP12.47□□□□□ -0.41
PNKP-211ENST00000598020 IGLV1-50A0A075B6I6 118 aa12.46□□□□□ -0.41
PNKP-211ENST00000598020 RPL37AP8A6NKH3 93 aa12.46□□□□□ -0.41
PNKP-211ENST00000598020 M0R378 163 aa12.46□□□□□ -0.41
PNKP-211ENST00000598020 PKHD1L1Q86WI1 4243 aa12.45□□□□□ -0.42
PNKP-211ENST00000598020 MIEN1Q9BRT3 115 aa12.45□□□□□ -0.42
PNKP-211ENST00000598020 JOSD1Q15040 202 aaPredicted RBP12.44□□□□□ -0.42
PNKP-211ENST00000598020 NDUFC2O95298 119 aa12.43□□□□□ -0.42
PNKP-211ENST00000598020 SOSTDC1Q6X4U4 206 aa12.43□□□□□ -0.42
PNKP-211ENST00000598020 SCGB1D4Q6XE38 83 aa12.43□□□□□ -0.42
PNKP-211ENST00000598020 LINC00308Q8TCZ7 52 aa12.42□□□□□ -0.42
PNKP-211ENST00000598020 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
PNKP-211ENST00000598020 TRBV10-2A0A0K0K1G8 114 aa12.41□□□□□ -0.42
PNKP-211ENST00000598020 TMEM238C9JI98 176 aa12.41□□□□□ -0.42
PNKP-211ENST00000598020 EIF4EBP3O60516 100 aaPredicted RBP12.41□□□□□ -0.42
PNKP-211ENST00000598020 BCE1O60756 84 aa12.41□□□□□ -0.42
PNKP-211ENST00000598020 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
PNKP-211ENST00000598020 MYCBP2O75592 4640 aa12.41□□□□□ -0.42
PNKP-211ENST00000598020 SPANXDQ9BXN6 97 aa12.4□□□□□ -0.42
PNKP-211ENST00000598020 SPANXCQ9NY87 97 aa12.4□□□□□ -0.42
PNKP-211ENST00000598020 KRTAP29-1A8MX34 341 aaPredicted RBP12.39□□□□□ -0.43
PNKP-211ENST00000598020 NCR3O14931 201 aa12.39□□□□□ -0.43
PNKP-211ENST00000598020 OXTP01178 125 aa12.39□□□□□ -0.43
PNKP-211ENST00000598020 Q6ZVH6 145 aa12.39□□□□□ -0.43
PNKP-211ENST00000598020 PPDPFQ9H3Y8 114 aa12.39□□□□□ -0.43
PNKP-211ENST00000598020 SPANXB1Q9NS25 103 aaPredicted RBP12.39□□□□□ -0.43
PNKP-211ENST00000598020 NPC2P61916 151 aa12.38□□□□□ -0.43
PNKP-211ENST00000598020 ZNF861PO60384 105 aa12.37□□□□□ -0.43
PNKP-211ENST00000598020 REG3GQ6UW15 175 aa12.36□□□□□ -0.43
PNKP-211ENST00000598020 DIRC1Q969H9 104 aa12.36□□□□□ -0.43
PNKP-211ENST00000598020 TMEM126AQ9H061 195 aa12.36□□□□□ -0.43
PNKP-211ENST00000598020 KCNQ1DNQ9H478 68 aa12.36□□□□□ -0.43
PNKP-211ENST00000598020 IFITM1P13164 125 aa12.35□□□□□ -0.43
PNKP-211ENST00000598020 COPS9Q8WXC6 57 aa12.35□□□□□ -0.43
PNKP-211ENST00000598020 TRBV10-3A0A0K0K1G6 114 aa12.34□□□□□ -0.43
PNKP-211ENST00000598020 COX8AP10176 69 aa12.34□□□□□ -0.43
PNKP-211ENST00000598020 LRP1Q07954 4544 aaKnown RBP12.34□□□□□ -0.43
PNKP-211ENST00000598020 H0Y9J4 135 aa12.33□□□□□ -0.44
PNKP-211ENST00000598020 PRYO14603 147 aa12.33□□□□□ -0.44
PNKP-211ENST00000598020 DLEU1O43261 78 aa12.33□□□□□ -0.44
PNKP-211ENST00000598020 RPL28P46779 137 aaKnown RBP12.33□□□□□ -0.44
PNKP-211ENST00000598020 PYY3Q5JQD4 70 aa12.33□□□□□ -0.44
PNKP-211ENST00000598020 KRTAP13-1Q8IUC0 172 aa12.33□□□□□ -0.44
PNKP-211ENST00000598020 IGLV6-57P01721 117 aa12.32□□□□□ -0.44
PNKP-211ENST00000598020 VAMP8Q9BV40 100 aa12.32□□□□□ -0.44
PNKP-211ENST00000598020 DDTP30046 118 aa12.31□□□□□ -0.44
PNKP-211ENST00000598020 SPRR1AP35321 89 aa12.31□□□□□ -0.44
PNKP-211ENST00000598020 SPATA45Q537H7 98 aa12.31□□□□□ -0.44
PNKP-211ENST00000598020 PAM16Q9Y3D7 125 aa12.31□□□□□ -0.44
PNKP-211ENST00000598020 FAT3Q8TDW7 4589 aa12.31□□□□□ -0.44
PNKP-211ENST00000598020 DMBT1Q9UGM3 2413 aaPredicted RBP12.31□□□□□ -0.44
PNKP-211ENST00000598020 UBE2AP49459 152 aa12.29□□□□□ -0.44
PNKP-211ENST00000598020 S100A12P80511 92 aa12.29□□□□□ -0.44
PNKP-211ENST00000598020 MUSTN1Q8IVN3 82 aa12.29□□□□□ -0.44
PNKP-211ENST00000598020 LINC00518Q8N0U6 118 aa12.29□□□□□ -0.44
PNKP-211ENST00000598020 LINC01600Q96MT4 127 aa12.29□□□□□ -0.44
PNKP-211ENST00000598020 S100A7L2Q5SY68 101 aa12.28□□□□□ -0.44
PNKP-211ENST00000598020 FAM19A1Q7Z5A9 133 aa12.28□□□□□ -0.44
PNKP-211ENST00000598020 LINC00337Q8N6G1 96 aa12.28□□□□□ -0.44
PNKP-211ENST00000598020 KRTAP4-16G5E9R7 235 aaPredicted RBP12.27□□□□□ -0.45
PNKP-211ENST00000598020 J3QL48 77 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms