RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RIGQ13278 110 aa8.13□□□□□ -1.11
VPS53-218ENST00000575207 PDZD11Q5EBL8 140 aa8.12□□□□□ -1.11
VPS53-218ENST00000575207 ETDCA0A1B0GVM5 59 aa8.11□□□□□ -1.11
VPS53-218ENST00000575207 PRYO14603 147 aa8.11□□□□□ -1.11
VPS53-218ENST00000575207 ATP5LO75964 103 aa8.11□□□□□ -1.11
VPS53-218ENST00000575207 SPRR1AP35321 89 aa8.1□□□□□ -1.11
VPS53-218ENST00000575207 TAGLN2P37802 199 aaKnown RBP8.1□□□□□ -1.11
VPS53-218ENST00000575207 HRCT1Q6UXD1 115 aa8.1□□□□□ -1.11
VPS53-218ENST00000575207 KRTAP2-2Q9BYT5 123 aa8.1□□□□□ -1.11
VPS53-218ENST00000575207 KRTAP2-1Q9BYU5 128 aa8.1□□□□□ -1.11
VPS53-218ENST00000575207 CHTOPQ9Y3Y2 248 aaKnown RBP8.1□□□□□ -1.11
VPS53-218ENST00000575207 ERC2-IT1O76042 136 aa8.09□□□□□ -1.11
VPS53-218ENST00000575207 SLC51BQ86UW2 128 aa8.09□□□□□ -1.11
VPS53-218ENST00000575207 NPYP01303 97 aa8.08□□□□□ -1.12
VPS53-218ENST00000575207 KIAA1644Q3SXP7 199 aa8.08□□□□□ -1.12
VPS53-218ENST00000575207 PRSS47A8MTI9 375 aa8.07□□□□□ -1.12
VPS53-218ENST00000575207 D6R8Y8 96 aa8.07□□□□□ -1.12
VPS53-218ENST00000575207 TCTE3Q8IZS6 198 aa8.07□□□□□ -1.12
VPS53-218ENST00000575207 CYSLTR1Q9Y271 337 aa8.06□□□□□ -1.12
VPS53-218ENST00000575207 ATP11AUNQ6ZP68 121 aa8.05□□□□□ -1.12
VPS53-218ENST00000575207 LOC389332A0A1B0GUA5 103 aa8.04□□□□□ -1.12
VPS53-218ENST00000575207 CEBPGP53567 150 aa8.04□□□□□ -1.12
VPS53-218ENST00000575207 C20orf166-AS1Q96NR2 134 aa8.04□□□□□ -1.12
VPS53-218ENST00000575207 KCNQ1DNQ9H478 68 aa8.04□□□□□ -1.12
VPS53-218ENST00000575207 BLOC1S1P78537 153 aa8.03□□□□□ -1.12
VPS53-218ENST00000575207 ERG28Q9UKR5 140 aa8.03□□□□□ -1.12
VPS53-218ENST00000575207 hCG_2014768A0A024R1R8 64 aa8.01□□□□□ -1.13
VPS53-218ENST00000575207 TRBV20-1A0A075B6N2 111 aa8.01□□□□□ -1.13
VPS53-218ENST00000575207 IGIPA6NJ69 53 aa8.01□□□□□ -1.13
VPS53-218ENST00000575207 SPINK8P0C7L1 97 aa8.01□□□□□ -1.13
VPS53-218ENST00000575207 COX17Q14061 63 aa8.01□□□□□ -1.13
VPS53-218ENST00000575207 B5MCH6 92 aa8□□□□□ -1.13
VPS53-218ENST00000575207 PAPPA-AS1Q5QFB9 102 aa8□□□□□ -1.13
VPS53-218ENST00000575207 ALKAL2Q6UX46 152 aa8□□□□□ -1.13
VPS53-218ENST00000575207 TRAV9-1A0A075B6T8 112 aa7.99□□□□□ -1.13
VPS53-218ENST00000575207 IGLV5-45A0A087WSX0 123 aa7.99□□□□□ -1.13
VPS53-218ENST00000575207 C1orf195Q5TG92 126 aa7.99□□□□□ -1.13
VPS53-218ENST00000575207 TMEM250H0YL14 139 aa7.98□□□□□ -1.13
VPS53-218ENST00000575207 PPBPP02775 128 aa7.98□□□□□ -1.13
VPS53-218ENST00000575207 Q9BRP9 147 aa7.98□□□□□ -1.13
VPS53-218ENST00000575207 NAT8BQ9UHF3 227 aa7.97□□□□□ -1.13
VPS53-218ENST00000575207 TINCRA0A1B0GVN0 87 aa7.96□□□□□ -1.14
VPS53-218ENST00000575207 SMIM7Q9BQ49 75 aa7.96□□□□□ -1.14
VPS53-218ENST00000575207 OSTCQ9NRP0 149 aa7.96□□□□□ -1.14
VPS53-218ENST00000575207 A0A1B0GW15 77 aa7.94□□□□□ -1.14
VPS53-218ENST00000575207 C6orf99Q4VX62 202 aa7.94□□□□□ -1.14
VPS53-218ENST00000575207 ORMDL3Q8N138 153 aa7.94□□□□□ -1.14
VPS53-218ENST00000575207 V9GYV3 84 aa7.94□□□□□ -1.14
VPS53-218ENST00000575207 H7C2G1 150 aa7.93□□□□□ -1.14
VPS53-218ENST00000575207 ZNF625Q96I27 306 aaPredicted RBP7.93□□□□□ -1.14
VPS53-218ENST00000575207 PRELID3AQ96N28 172 aa7.93□□□□□ -1.14
VPS53-218ENST00000575207 F8W036 122 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 NCR3O14931 201 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 S100A12P80511 92 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 CD164Q04900 197 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 FAM74A3Q4VXF1 159 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 Q5XG85 94 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 Q6ZRX8 168 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 Q75L30 129 aa7.92□□□□□ -1.14
VPS53-218ENST00000575207 TRBV10-3A0A0K0K1G6 114 aa7.91□□□□□ -1.14
VPS53-218ENST00000575207 FAM236DA0A1B0GTK5 79 aa7.91□□□□□ -1.14
VPS53-218ENST00000575207 FAM236CP0DP71 79 aa7.91□□□□□ -1.14
VPS53-218ENST00000575207 ORMDL2Q53FV1 153 aa7.91□□□□□ -1.14
VPS53-218ENST00000575207 TMEM136Q6ZRR5 245 aa7.9□□□□□ -1.14
VPS53-218ENST00000575207 C10orf91Q5T1B1 145 aa7.89□□□□□ -1.15
VPS53-218ENST00000575207 SMIM29Q86T20 159 aa7.89□□□□□ -1.15
VPS53-218ENST00000575207 MRPL18Q9H0U6 180 aaKnown RBP7.89□□□□□ -1.15
VPS53-218ENST00000575207 Q8N8P6 123 aa7.88□□□□□ -1.15
VPS53-218ENST00000575207 ST20-AS1Q8NBB2 130 aa7.88□□□□□ -1.15
VPS53-218ENST00000575207 H3BRM9 83 aa7.87□□□□□ -1.15
VPS53-218ENST00000575207 S100A8P05109 93 aa7.87□□□□□ -1.15
VPS53-218ENST00000575207 SRP19P09132 144 aaKnown RBP7.87□□□□□ -1.15
VPS53-218ENST00000575207 ADIRFQ15847 76 aa7.87□□□□□ -1.15
VPS53-218ENST00000575207 BOD1L2Q8IYS8 172 aa7.87□□□□□ -1.15
VPS53-218ENST00000575207 MAP1LC3AQ9H492 121 aa7.87□□□□□ -1.15
VPS53-218ENST00000575207 IGLV5-39A0A0G2JS06 123 aa7.86□□□□□ -1.15
VPS53-218ENST00000575207 LINC00158P58513 81 aa7.86□□□□□ -1.15
VPS53-218ENST00000575207 A6NN06 94 aa7.85□□□□□ -1.15
VPS53-218ENST00000575207 RPL23P62829 140 aaKnown RBP7.85□□□□□ -1.15
VPS53-218ENST00000575207 PEA15Q15121 130 aa7.85□□□□□ -1.15
VPS53-218ENST00000575207 MRPL54Q6P161 138 aaKnown RBP7.85□□□□□ -1.15
VPS53-218ENST00000575207 SMIM27A0A1W2PRY6 76 aa7.84□□□□□ -1.15
VPS53-218ENST00000575207 SLC25A34Q6PIV7 304 aa7.84□□□□□ -1.15
VPS53-218ENST00000575207 NAT8Q9UHE5 227 aa7.84□□□□□ -1.15
VPS53-218ENST00000575207 K7EMI3 77 aa7.83□□□□□ -1.16
VPS53-218ENST00000575207 Q1RN00 199 aa7.83□□□□□ -1.16
VPS53-218ENST00000575207 Q8N9P0 234 aaPredicted RBP7.83□□□□□ -1.16
VPS53-218ENST00000575207 LAMTOR2Q9Y2Q5 125 aa7.83□□□□□ -1.16
VPS53-218ENST00000575207 JOSD1Q15040 202 aaPredicted RBP7.82□□□□□ -1.16
VPS53-218ENST00000575207 A0A1B0GXF2 115 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 C5orf52A6NGY3 159 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 G0S2P27469 103 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 PMVKQ15126 192 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 SFTA2Q6UW10 78 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 ERASQ7Z444 233 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 TOMM6Q96B49 74 aa7.81□□□□□ -1.16
VPS53-218ENST00000575207 A0A0U1RRA0 63 aa7.8□□□□□ -1.16
VPS53-218ENST00000575207 SPRR1BP22528 89 aa7.8□□□□□ -1.16
VPS53-218ENST00000575207 OBSCN-AS1Q96MR7 158 aa7.8□□□□□ -1.16
VPS53-218ENST00000575207 CST9LQ9H4G1 147 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms