RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 IGKV2-24A0A0C4DH68 120 aa7.16□□□□□ -1.26
CLN3-226ENST00000567160 A0A0U1RRA0 63 aa7.16□□□□□ -1.26
CLN3-226ENST00000567160 GAGE2BQ13066 116 aa7.16□□□□□ -1.26
CLN3-226ENST00000567160 SDIM1Q6ZPB5 146 aa7.16□□□□□ -1.26
CLN3-226ENST00000567160 A0A096LNI7 61 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 A0A0J9YXY3 114 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 CHTF8P0CG12 524 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 SMIM13P0DJ93 91 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 LINC00158P58513 81 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 GAGE2EQ4V326 116 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 Q6ZRP5 223 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 GAGE2DQ9UEU5 116 aa7.15□□□□□ -1.26
CLN3-226ENST00000567160 NDUFC2-KCTD14E9PQ53 114 aa7.14□□□□□ -1.27
CLN3-226ENST00000567160 SMIM6P0DI80 62 aa7.14□□□□□ -1.27
CLN3-226ENST00000567160 TP73-AS1Q9UF72 201 aa7.14□□□□□ -1.27
CLN3-226ENST00000567160 PKIGQ9Y2B9 76 aa7.14□□□□□ -1.27
CLN3-226ENST00000567160 TLX1NBP0CAT3 122 aa7.13□□□□□ -1.27
CLN3-226ENST00000567160 PTTG1IPP53801 180 aa7.13□□□□□ -1.27
CLN3-226ENST00000567160 S100A12P80511 92 aa7.13□□□□□ -1.27
CLN3-226ENST00000567160 C14orf144Q96I85 54 aa7.13□□□□□ -1.27
CLN3-226ENST00000567160 A0A0U1RQV1 116 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 PANO1I0J062 215 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 COX8AP10176 69 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 COX17Q14061 63 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 SCGB1D4Q6XE38 83 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 DAND5Q8N907 189 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 DPH3Q96FX2 82 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 LINC01600Q96MT4 127 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 XAGE1AQ9HD64 81 aa7.12□□□□□ -1.27
CLN3-226ENST00000567160 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.12□□□□□ -1.27
CLN3-226ENST00000567160 LINC00587B1AMM8 73 aa7.11□□□□□ -1.27
CLN3-226ENST00000567160 MIR7-3HGQ8N6C7 128 aa7.11□□□□□ -1.27
CLN3-226ENST00000567160 CIRBPQ14011 172 aaKnown RBP7.1□□□□□ -1.27
CLN3-226ENST00000567160 C9orf129Q5T035 196 aaKnown RBP7.1□□□□□ -1.27
CLN3-226ENST00000567160 ADAMTSL4-AS1Q5T5F5 129 aa7.1□□□□□ -1.27
CLN3-226ENST00000567160 BOD1L2Q8IYS8 172 aa7.1□□□□□ -1.27
CLN3-226ENST00000567160 SND1-IT1Q9HBX3 110 aa7.1□□□□□ -1.27
CLN3-226ENST00000567160 NPC2P61916 151 aa7.09□□□□□ -1.27
CLN3-226ENST00000567160 SLC25A34Q6PIV7 304 aa7.09□□□□□ -1.27
CLN3-226ENST00000567160 SPACA4Q8TDM5 124 aa7.09□□□□□ -1.27
CLN3-226ENST00000567160 C12orf57Q99622 126 aa7.09□□□□□ -1.27
CLN3-226ENST00000567160 LITAFQ99732 161 aa7.09□□□□□ -1.27
CLN3-226ENST00000567160 LINC00474Q9P2X8 69 aa7.09□□□□□ -1.27
CLN3-226ENST00000567160 FAM168BA1KXE4 195 aa7.08□□□□□ -1.28
CLN3-226ENST00000567160 TMEM238C9JI98 176 aa7.08□□□□□ -1.28
CLN3-226ENST00000567160 TIMM17BO60830 172 aa7.08□□□□□ -1.28
CLN3-226ENST00000567160 DLEU1O43261 78 aa7.07□□□□□ -1.28
CLN3-226ENST00000567160 FAM19A5Q7Z5A7 132 aaPredicted RBP7.07□□□□□ -1.28
CLN3-226ENST00000567160 PRO1933Q9H354 126 aa7.07□□□□□ -1.28
CLN3-226ENST00000567160 A0A087WYN8 130 aa7.06□□□□□ -1.28
CLN3-226ENST00000567160 A0A1W2PNN7 141 aa7.06□□□□□ -1.28
CLN3-226ENST00000567160 SOSTDC1Q6X4U4 206 aa7.05□□□□□ -1.28
CLN3-226ENST00000567160 MIEN1Q9BRT3 115 aa7.05□□□□□ -1.28
CLN3-226ENST00000567160 SPANXDQ9BXN6 97 aa7.05□□□□□ -1.28
CLN3-226ENST00000567160 SPANXCQ9NY87 97 aa7.05□□□□□ -1.28
CLN3-226ENST00000567160 EIF4EBP3O60516 100 aaPredicted RBP7.04□□□□□ -1.28
CLN3-226ENST00000567160 SRSF9Q13242 221 aaKnown RBP eCLIP7.04□□□□□ -1.28
CLN3-226ENST00000567160 C2orf91Q6ZV80 131 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 KRTAP7-1Q8IUC3 87 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 LINC00518Q8N0U6 118 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 Q8NDZ9 215 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 LINC00308Q8TCZ7 52 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 C7orf33Q8WU49 177 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 PLAC8Q9NZF1 115 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 UQCR10Q9UDW1 63 aa7.04□□□□□ -1.28
CLN3-226ENST00000567160 REG3GQ6UW15 175 aa7.03□□□□□ -1.28
CLN3-226ENST00000567160 SPANXB1Q9NS25 103 aaPredicted RBP7.03□□□□□ -1.28
CLN3-226ENST00000567160 MUC2Q02817 5179 aa7.03□□□□□ -1.28
CLN3-226ENST00000567160 FAT4Q6V0I7 4981 aa7.02□□□□□ -1.28
CLN3-226ENST00000567160 M0QXV9 152 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 VPREB1P12018 145 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 KRTAP10-8P60410 259 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 RPL24P83731 157 aaKnown RBP7.02□□□□□ -1.29
CLN3-226ENST00000567160 MUSTN1Q8IVN3 82 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 NKAPP1Q8N9T2 125 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 HIST1H4GQ99525 98 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 HIGD1BQ9P298 99 aa7.02□□□□□ -1.29
CLN3-226ENST00000567160 LOC107984156A0A0G2JMH3 177 aa7.01□□□□□ -1.29
CLN3-226ENST00000567160 NCR3O14931 201 aa7.01□□□□□ -1.29
CLN3-226ENST00000567160 IFITM1P13164 125 aa7.01□□□□□ -1.29
CLN3-226ENST00000567160 PRR3P79522 188 aaKnown RBP7.01□□□□□ -1.29
CLN3-226ENST00000567160 Q6ZVH6 145 aa7.01□□□□□ -1.29
CLN3-226ENST00000567160 PHF5AQ7RTV0 110 aaKnown RBP7.01□□□□□ -1.29
CLN3-226ENST00000567160 ARL17AQ8IVW1 177 aa7.01□□□□□ -1.29
CLN3-226ENST00000567160 LPAP08519 4548 aa7□□□□□ -1.29
CLN3-226ENST00000567160 GAGE10A6NGK3 116 aa7□□□□□ -1.29
CLN3-226ENST00000567160 COPS9Q8WXC6 57 aa7□□□□□ -1.29
CLN3-226ENST00000567160 C22orf24Q9Y442 160 aa7□□□□□ -1.29
CLN3-226ENST00000567160 IGLV5-37A0A075B6J1 123 aa6.99□□□□□ -1.29
CLN3-226ENST00000567160 TSTD3H0UI37 97 aa6.99□□□□□ -1.29
CLN3-226ENST00000567160 MRPL55Q7Z7F7 128 aaKnown RBP6.98□□□□□ -1.29
CLN3-226ENST00000567160 RPL37AP8A6NKH3 93 aa6.97□□□□□ -1.29
CLN3-226ENST00000567160 M0R378 163 aa6.97□□□□□ -1.29
CLN3-226ENST00000567160 NDUFC2O95298 119 aa6.97□□□□□ -1.29
CLN3-226ENST00000567160 UBE2BP63146 152 aa6.97□□□□□ -1.29
CLN3-226ENST00000567160 LBHQ53QV2 105 aaPredicted RBP6.97□□□□□ -1.29
CLN3-226ENST00000567160 SPINK6Q6UWN8 80 aa6.97□□□□□ -1.29
CLN3-226ENST00000567160 LINC00167Q96N53 147 aa6.97□□□□□ -1.29
CLN3-226ENST00000567160 A4D1N5 150 aa6.96□□□□□ -1.3
CLN3-226ENST00000567160 HSD52Q0P140 79 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms