RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 C10orf91Q5T1B1 145 aa2.41□□□□□ -2.02
VPS35-204ENST00000563884 Q8IZM0 81 aa2.41□□□□□ -2.02
VPS35-204ENST00000563884 SPRR2FQ96RM1 72 aa2.41□□□□□ -2.02
VPS35-204ENST00000563884 ACTR3CQ9C0K3 210 aaPredicted RBP2.41□□□□□ -2.02
VPS35-204ENST00000563884 TOMM7Q9P0U1 55 aa2.41□□□□□ -2.02
VPS35-204ENST00000563884 FAM74A7A6NL05 159 aa2.4□□□□□ -2.03
VPS35-204ENST00000563884 A8MWP4 228 aa2.4□□□□□ -2.03
VPS35-204ENST00000563884 TCAPO15273 167 aa2.4□□□□□ -2.03
VPS35-204ENST00000563884 Q6ZN92 141 aa2.4□□□□□ -2.03
VPS35-204ENST00000563884 RBM12B-AS1Q9P1G2 102 aa2.4□□□□□ -2.03
VPS35-204ENST00000563884 CENPXA8MT69 81 aa2.39□□□□□ -2.03
VPS35-204ENST00000563884 PET100P0DJ07 73 aa2.39□□□□□ -2.03
VPS35-204ENST00000563884 BAGE2Q86Y30 109 aa2.39□□□□□ -2.03
VPS35-204ENST00000563884 SEC22CQ9BRL7 303 aa2.39□□□□□ -2.03
VPS35-204ENST00000563884 RNASE7Q9H1E1 156 aaKnown RBP2.39□□□□□ -2.03
VPS35-204ENST00000563884 SPANXA1Q9NS26 97 aa2.39□□□□□ -2.03
VPS35-204ENST00000563884 HSPB11Q9Y547 144 aa2.39□□□□□ -2.03
VPS35-204ENST00000563884 PPP1R17O96001 155 aa2.38□□□□□ -2.03
VPS35-204ENST00000563884 MRPS36P82909 103 aaKnown RBP2.38□□□□□ -2.03
VPS35-204ENST00000563884 SERF2P84101 59 aa2.38□□□□□ -2.03
VPS35-204ENST00000563884 PYDC2Q56P42 97 aa2.38□□□□□ -2.03
VPS35-204ENST00000563884 SMCR5Q8TEV8 140 aa2.38□□□□□ -2.03
VPS35-204ENST00000563884 PSMG3Q9BT73 122 aaPredicted RBP2.38□□□□□ -2.03
VPS35-204ENST00000563884 CNFNQ9BYD5 112 aa2.38□□□□□ -2.03
VPS35-204ENST00000563884 NUDT15Q9NV35 164 aa2.38□□□□□ -2.03
VPS35-204ENST00000563884 DSTQ03001 7570 aaKnown RBP2.38□□□□□ -2.03
VPS35-204ENST00000563884 CCDC160A6NGH7 325 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 INMT-MINDY4F8WBC2 141 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 PFDN1O60925 122 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 NOL3O60936 208 aaKnown RBP2.37□□□□□ -2.03
VPS35-204ENST00000563884 ATP6V1G1O75348 118 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 POLR2KP53803 58 aaKnown RBP2.37□□□□□ -2.03
VPS35-204ENST00000563884 IL15RAQ13261 267 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 SMIM3Q9BZL3 60 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 NDUFA13Q9P0J0 144 aa2.37□□□□□ -2.03
VPS35-204ENST00000563884 AHNAK2Q8IVF2 5795 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 A0A087WXM4 84 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 CTXND1A0A1B0GTU2 59 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 ETDCA0A1B0GVM5 59 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 PPP1R2P9O14990 202 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 SCO1O75880 301 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 DEFA1P59665 94 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 S100A12P80511 92 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 KRTAP5-7Q6L8G8 165 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 MTURNQ8N3F0 131 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 C9orf62Q8N4C0 152 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 C2orf88Q9BSF0 95 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 BIN3Q9NQY0 253 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 TNFSF18Q9UNG2 199 aa2.36□□□□□ -2.03
VPS35-204ENST00000563884 E9PLD3 99 aa2.35□□□□□ -2.03
VPS35-204ENST00000563884 SIX6O95475 246 aa2.35□□□□□ -2.03
VPS35-204ENST00000563884 ATP6V0CP27449 155 aa2.35□□□□□ -2.03
VPS35-204ENST00000563884 IFI27P40305 119 aaPredicted RBP2.35□□□□□ -2.03
VPS35-204ENST00000563884 CD164Q04900 197 aa2.35□□□□□ -2.03
VPS35-204ENST00000563884 TRIQKQ629K1 86 aa2.35□□□□□ -2.03
VPS35-204ENST00000563884 SLC25A34Q6PIV7 304 aa2.35□□□□□ -2.03
VPS35-204ENST00000563884 BORCS7-ASMTA0A0B4J1R7 106 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 SPRR5A0A1B0GTR4 108 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 SEC11AP67812 179 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 Q5XG85 94 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 HRCT1Q6UXD1 115 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 TEX43Q6ZNM6 134 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 BORCS7Q96B45 105 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 SMIM12Q96EX1 92 aa2.34□□□□□ -2.03
VPS35-204ENST00000563884 MUC19Q7Z5P9 8384 aa2.33□□□□□ -2.04
VPS35-204ENST00000563884 TRAV9-1A0A075B6T8 112 aa2.33□□□□□ -2.04
VPS35-204ENST00000563884 A0A0U1RRA0 63 aa2.33□□□□□ -2.04
VPS35-204ENST00000563884 TMEM141Q96I45 108 aa2.33□□□□□ -2.04
VPS35-204ENST00000563884 EIF5A2Q9GZV4 153 aaKnown RBP2.33□□□□□ -2.04
VPS35-204ENST00000563884 CHTOPQ9Y3Y2 248 aaKnown RBP2.33□□□□□ -2.04
VPS35-204ENST00000563884 TRBV20OR9-2A0A075B6H5 130 aa2.32□□□□□ -2.04
VPS35-204ENST00000563884 MAP1LC3B2A6NCE7 125 aa2.32□□□□□ -2.04
VPS35-204ENST00000563884 ATP5LO75964 103 aa2.32□□□□□ -2.04
VPS35-204ENST00000563884 RPL39P62891 51 aaKnown RBP2.32□□□□□ -2.04
VPS35-204ENST00000563884 C1orf195Q5TG92 126 aa2.32□□□□□ -2.04
VPS35-204ENST00000563884 MAP1LC3BQ9GZQ8 125 aa2.32□□□□□ -2.04
VPS35-204ENST00000563884 TMEM191AQ9H0A3 160 aa2.32□□□□□ -2.04
VPS35-204ENST00000563884 LOC107984156A0A0G2JMH3 177 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 A8MWL6 223 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 H7C2G1 150 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 S100A5P33763 92 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 RPL35P42766 123 aaKnown RBP2.31□□□□□ -2.04
VPS35-204ENST00000563884 RAB5BP61020 215 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 RAB14P61106 215 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 HERVK_113P63121 156 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 AKR1C8PQ5T2L2 129 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 Q5VV11 94 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 ARL17AQ8IVW1 177 aa2.31□□□□□ -2.04
VPS35-204ENST00000563884 A0A0G2JQZ4 141 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 TCL1BO95988 128 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 SPRR1AP35321 89 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 CENPWQ5EE01 88 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 COX7B2Q8TF08 81 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 PPP1R1CQ8WVI7 109 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 MED9Q9NWA0 146 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 V9GYH0 126 aa2.3□□□□□ -2.04
VPS35-204ENST00000563884 MPC2O95563 127 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 BTCP35070 178 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 GNG4P50150 75 aa2.29□□□□□ -2.04
VPS35-204ENST00000563884 COX17Q14061 63 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms