RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PKIGQ9Y2B9 76 aa6.1□□□□□ -1.43
CLK3-208ENST00000562626 DMBT1Q9UGM3 2413 aaPredicted RBP6.1□□□□□ -1.43
CLK3-208ENST00000562626 SND1-IT1Q9HBX3 110 aa6.09□□□□□ -1.43
CLK3-208ENST00000562626 C20orf202A1L168 122 aa6.08□□□□□ -1.44
CLK3-208ENST00000562626 EIF4EBP3O60516 100 aaPredicted RBP6.08□□□□□ -1.44
CLK3-208ENST00000562626 LGALS3P17931 250 aaKnown RBP6.08□□□□□ -1.44
CLK3-208ENST00000562626 DAND5Q8N907 189 aa6.08□□□□□ -1.44
CLK3-208ENST00000562626 TP73-AS1Q9UF72 201 aa6.08□□□□□ -1.44
CLK3-208ENST00000562626 A0A0J9YXY3 114 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 MYMXA0A1B0GTQ4 84 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 LINC00158P58513 81 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 MEIG1Q5JSS6 88 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 ADAMTSL4-AS1Q5T5F5 129 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 PCP2Q8IVA1 136 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 MIR7-3HGQ8N6C7 128 aa6.07□□□□□ -1.44
CLK3-208ENST00000562626 FLG2Q5D862 2391 aaPredicted RBP6.07□□□□□ -1.44
CLK3-208ENST00000562626 M0QXV9 152 aa6.06□□□□□ -1.44
CLK3-208ENST00000562626 RPL37AP61513 92 aaKnown RBP6.06□□□□□ -1.44
CLK3-208ENST00000562626 HERV-K104P63124 156 aa6.06□□□□□ -1.44
CLK3-208ENST00000562626 COX17Q14061 63 aa6.06□□□□□ -1.44
CLK3-208ENST00000562626 LBHQ53QV2 105 aaPredicted RBP6.06□□□□□ -1.44
CLK3-208ENST00000562626 SFTA2Q6UW10 78 aa6.06□□□□□ -1.44
CLK3-208ENST00000562626 LITAFQ99732 161 aa6.06□□□□□ -1.44
CLK3-208ENST00000562626 C22orf24Q9Y442 160 aa6.06□□□□□ -1.44
CLK3-208ENST00000562626 FAM229AH3BQW9 127 aa6.05□□□□□ -1.44
CLK3-208ENST00000562626 SCGB1D1O95968 90 aa6.05□□□□□ -1.44
CLK3-208ENST00000562626 VPREB1P12018 145 aa6.05□□□□□ -1.44
CLK3-208ENST00000562626 NMUP48645 174 aa6.05□□□□□ -1.44
CLK3-208ENST00000562626 PRR3P79522 188 aaKnown RBP6.05□□□□□ -1.44
CLK3-208ENST00000562626 SOSTDC1Q6X4U4 206 aa6.05□□□□□ -1.44
CLK3-208ENST00000562626 PLA2G2DQ9UNK4 145 aa6.05□□□□□ -1.44
CLK3-208ENST00000562626 IGLV5-37A0A075B6J1 123 aa6.04□□□□□ -1.44
CLK3-208ENST00000562626 ZNF815PA8K554 130 aa6.04□□□□□ -1.44
CLK3-208ENST00000562626 PSORS1C2Q9UIG4 136 aa6.04□□□□□ -1.44
CLK3-208ENST00000562626 GAGE10A6NGK3 116 aa6.03□□□□□ -1.44
CLK3-208ENST00000562626 NPC2P61916 151 aa6.03□□□□□ -1.44
CLK3-208ENST00000562626 C7orf33Q8WU49 177 aa6.03□□□□□ -1.44
CLK3-208ENST00000562626 LINC00167Q96N53 147 aa6.03□□□□□ -1.44
CLK3-208ENST00000562626 RPL37AP8A6NKH3 93 aa6.02□□□□□ -1.45
CLK3-208ENST00000562626 PLA2G1BP04054 148 aaKnown RBP6.02□□□□□ -1.45
CLK3-208ENST00000562626 JOSD1Q15040 202 aaPredicted RBP6.02□□□□□ -1.45
CLK3-208ENST00000562626 MRPL55Q7Z7F7 128 aaKnown RBP6.02□□□□□ -1.45
CLK3-208ENST00000562626 FAT3Q8TDW7 4589 aa6.01□□□□□ -1.45
CLK3-208ENST00000562626 INAFM2P0DMQ5 153 aa6.01□□□□□ -1.45
CLK3-208ENST00000562626 PYY3Q5JQD4 70 aa6.01□□□□□ -1.45
CLK3-208ENST00000562626 BOD1L2Q8IYS8 172 aa6.01□□□□□ -1.45
CLK3-208ENST00000562626 LRP1Q07954 4544 aaKnown RBP6□□□□□ -1.45
CLK3-208ENST00000562626 LOC107984156A0A0G2JMH3 177 aa6□□□□□ -1.45
CLK3-208ENST00000562626 LINC00587B1AMM8 73 aa6□□□□□ -1.45
CLK3-208ENST00000562626 NCR3O14931 201 aa6□□□□□ -1.45
CLK3-208ENST00000562626 UBE2BP63146 152 aa6□□□□□ -1.45
CLK3-208ENST00000562626 LCE2DQ5TA82 110 aaPredicted RBP6□□□□□ -1.45
CLK3-208ENST00000562626 ARL17AQ8IVW1 177 aa6□□□□□ -1.45
CLK3-208ENST00000562626 MYCBP2O75592 4640 aa6□□□□□ -1.45
CLK3-208ENST00000562626 TIMM17BO60830 172 aa5.99□□□□□ -1.45
CLK3-208ENST00000562626 C1orf137Q5JT78 98 aa5.99□□□□□ -1.45
CLK3-208ENST00000562626 NKAPP1Q8N9T2 125 aa5.99□□□□□ -1.45
CLK3-208ENST00000562626 PAM16Q9Y3D7 125 aa5.99□□□□□ -1.45
CLK3-208ENST00000562626 IGKV2-28A0A075B6P5 120 aa5.98□□□□□ -1.45
CLK3-208ENST00000562626 TSTD3H0UI37 97 aa5.98□□□□□ -1.45
CLK3-208ENST00000562626 IGKV2D-28P01615 120 aa5.98□□□□□ -1.45
CLK3-208ENST00000562626 SRSF9Q13242 221 aaKnown RBP eCLIP5.98□□□□□ -1.45
CLK3-208ENST00000562626 LINC00308Q8TCZ7 52 aa5.98□□□□□ -1.45
CLK3-208ENST00000562626 IGLV1-50A0A075B6I6 118 aa5.97□□□□□ -1.45
CLK3-208ENST00000562626 KRTAP9-6A0A140TA67 174 aa5.97□□□□□ -1.45
CLK3-208ENST00000562626 TMEM238C9JI98 176 aa5.97□□□□□ -1.45
CLK3-208ENST00000562626 SPATA45Q537H7 98 aa5.97□□□□□ -1.45
CLK3-208ENST00000562626 HSBP1L1C9JCN9 74 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 IGLV7-43P04211 117 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 COX8AP10176 69 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 RPL24P83731 157 aaKnown RBP5.96□□□□□ -1.46
CLK3-208ENST00000562626 SCGB1D4Q6XE38 83 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 C14orf144Q96I85 54 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 SPANXDQ9BXN6 97 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 SPANXCQ9NY87 97 aa5.96□□□□□ -1.46
CLK3-208ENST00000562626 TRBV10-3A0A0K0K1G6 114 aa5.95□□□□□ -1.46
CLK3-208ENST00000562626 M0R378 163 aa5.95□□□□□ -1.46
CLK3-208ENST00000562626 VAMP8Q9BV40 100 aa5.95□□□□□ -1.46
CLK3-208ENST00000562626 C2orf91Q6ZV80 131 aa5.94□□□□□ -1.46
CLK3-208ENST00000562626 KRTAP13-1Q8IUC0 172 aa5.94□□□□□ -1.46
CLK3-208ENST00000562626 MUSTN1Q8IVN3 82 aa5.94□□□□□ -1.46
CLK3-208ENST00000562626 TMEM126AQ9H061 195 aa5.94□□□□□ -1.46
CLK3-208ENST00000562626 NDUFC2O95298 119 aa5.93□□□□□ -1.46
CLK3-208ENST00000562626 LINC00337Q8N6G1 96 aa5.93□□□□□ -1.46
CLK3-208ENST00000562626 MIEN1Q9BRT3 115 aa5.93□□□□□ -1.46
CLK3-208ENST00000562626 SPANXB1Q9NS25 103 aaPredicted RBP5.93□□□□□ -1.46
CLK3-208ENST00000562626 CBY1Q9Y3M2 126 aa5.93□□□□□ -1.46
CLK3-208ENST00000562626 HMCN2Q8NDA2 5059 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 TNXBP22105 4242 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 TRBV10-2A0A0K0K1G8 114 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 DLEU1O43261 78 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 BCE1O60756 84 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 PRLHP81277 87 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 REG3GQ6UW15 175 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 SPINK6Q6UWN8 80 aa5.92□□□□□ -1.46
CLK3-208ENST00000562626 KRTAP4-16G5E9R7 235 aaPredicted RBP5.91□□□□□ -1.46
CLK3-208ENST00000562626 IGLV6-57P01721 117 aa5.91□□□□□ -1.46
CLK3-208ENST00000562626 SPRR1AP35321 89 aa5.91□□□□□ -1.46
CLK3-208ENST00000562626 KRTAP9-2Q9BYQ4 174 aa5.91□□□□□ -1.46
CLK3-208ENST00000562626 KCNQ1DNQ9H478 68 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms