RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF815PA8K554 130 aa13.58□□□□□ -0.24
SNX1-210ENST00000560260 M0QXV9 152 aa13.58□□□□□ -0.24
SNX1-210ENST00000560260 FAM229AH3BQW9 127 aa13.57□□□□□ -0.24
SNX1-210ENST00000560260 PCP2Q8IVA1 136 aa13.57□□□□□ -0.24
SNX1-210ENST00000560260 DAND5Q8N907 189 aa13.57□□□□□ -0.24
SNX1-210ENST00000560260 PLA2G2DQ9UNK4 145 aa13.57□□□□□ -0.24
SNX1-210ENST00000560260 KRTAP11-1Q8IUC1 163 aa13.56□□□□□ -0.24
SNX1-210ENST00000560260 PKHD1L1Q86WI1 4243 aa13.55□□□□□ -0.24
SNX1-210ENST00000560260 RPL37AP61513 92 aaKnown RBP13.55□□□□□ -0.24
SNX1-210ENST00000560260 JOSD1Q15040 202 aaPredicted RBP13.55□□□□□ -0.24
SNX1-210ENST00000560260 C7orf33Q8WU49 177 aa13.55□□□□□ -0.24
SNX1-210ENST00000560260 LITAFQ99732 161 aa13.55□□□□□ -0.24
SNX1-210ENST00000560260 C22orf24Q9Y442 160 aa13.55□□□□□ -0.24
SNX1-210ENST00000560260 PCLOQ9Y6V0 5065 aa13.54□□□□□ -0.24
SNX1-210ENST00000560260 LINC00587B1AMM8 73 aa13.54□□□□□ -0.24
SNX1-210ENST00000560260 VPREB1P12018 145 aa13.54□□□□□ -0.24
SNX1-210ENST00000560260 IGLV5-37A0A075B6J1 123 aa13.53□□□□□ -0.24
SNX1-210ENST00000560260 ADAMTSL4-AS1Q5T5F5 129 aa13.53□□□□□ -0.24
SNX1-210ENST00000560260 SRRM2Q9UQ35 2752 aaKnown RBP13.52□□□□□ -0.25
SNX1-210ENST00000560260 HSBP1L1C9JCN9 74 aa13.51□□□□□ -0.25
SNX1-210ENST00000560260 PLA2G1BP04054 148 aaKnown RBP13.5□□□□□ -0.25
SNX1-210ENST00000560260 PYY3Q5JQD4 70 aa13.5□□□□□ -0.25
SNX1-210ENST00000560260 EIF4EBP3O60516 100 aaPredicted RBP13.49□□□□□ -0.25
SNX1-210ENST00000560260 PRR3P79522 188 aaKnown RBP13.49□□□□□ -0.25
SNX1-210ENST00000560260 SOSTDC1Q6X4U4 206 aa13.49□□□□□ -0.25
SNX1-210ENST00000560260 TP73-AS1Q9UF72 201 aa13.49□□□□□ -0.25
SNX1-210ENST00000560260 TIMM17BO60830 172 aa13.48□□□□□ -0.25
SNX1-210ENST00000560260 MRPL55Q7Z7F7 128 aaKnown RBP13.48□□□□□ -0.25
SNX1-210ENST00000560260 BOD1L2Q8IYS8 172 aa13.47□□□□□ -0.25
SNX1-210ENST00000560260 PSORS1C2Q9UIG4 136 aa13.47□□□□□ -0.25
SNX1-210ENST00000560260 LOC107984156A0A0G2JMH3 177 aa13.46□□□□□ -0.25
SNX1-210ENST00000560260 HNRNPA3P51991 378 aaKnown RBP13.46□□□□□ -0.25
SNX1-210ENST00000560260 NPC2P61916 151 aa13.46□□□□□ -0.25
SNX1-210ENST00000560260 ARL17AQ8IVW1 177 aa13.46□□□□□ -0.25
SNX1-210ENST00000560260 NKAPP1Q8N9T2 125 aa13.46□□□□□ -0.25
SNX1-210ENST00000560260 LINC00167Q96N53 147 aa13.46□□□□□ -0.25
SNX1-210ENST00000560260 GAGE10A6NGK3 116 aa13.45□□□□□ -0.26
SNX1-210ENST00000560260 UBE2BP63146 152 aa13.45□□□□□ -0.26
SNX1-210ENST00000560260 RPL24P83731 157 aaKnown RBP13.44□□□□□ -0.26
SNX1-210ENST00000560260 SCGB1D4Q6XE38 83 aa13.44□□□□□ -0.26
SNX1-210ENST00000560260 LBHQ53QV2 105 aaPredicted RBP13.43□□□□□ -0.26
SNX1-210ENST00000560260 PAM16Q9Y3D7 125 aa13.43□□□□□ -0.26
SNX1-210ENST00000560260 RPL37AP8A6NKH3 93 aa13.41□□□□□ -0.26
SNX1-210ENST00000560260 SPATA45Q537H7 98 aa13.41□□□□□ -0.26
SNX1-210ENST00000560260 VAMP8Q9BV40 100 aa13.41□□□□□ -0.26
SNX1-210ENST00000560260 NCR3O14931 201 aa13.4□□□□□ -0.26
SNX1-210ENST00000560260 LINC00308Q8TCZ7 52 aa13.4□□□□□ -0.26
SNX1-210ENST00000560260 SPANXDQ9BXN6 97 aa13.4□□□□□ -0.26
SNX1-210ENST00000560260 SPANXCQ9NY87 97 aa13.4□□□□□ -0.26
SNX1-210ENST00000560260 COX8AP10176 69 aa13.39□□□□□ -0.27
SNX1-210ENST00000560260 MYCBP2O75592 4640 aa13.39□□□□□ -0.27
SNX1-210ENST00000560260 FAT3Q8TDW7 4589 aa13.39□□□□□ -0.27
SNX1-210ENST00000560260 TMEM238C9JI98 176 aa13.39□□□□□ -0.27
SNX1-210ENST00000560260 C1orf137Q5JT78 98 aa13.39□□□□□ -0.27
SNX1-210ENST00000560260 MIEN1Q9BRT3 115 aa13.39□□□□□ -0.27
SNX1-210ENST00000560260 INAFM2P0DMQ5 153 aa13.38□□□□□ -0.27
SNX1-210ENST00000560260 IGKV2-28A0A075B6P5 120 aa13.37□□□□□ -0.27
SNX1-210ENST00000560260 M0R378 163 aa13.37□□□□□ -0.27
SNX1-210ENST00000560260 IGKV2D-28P01615 120 aa13.37□□□□□ -0.27
SNX1-210ENST00000560260 IGLV1-50A0A075B6I6 118 aa13.36□□□□□ -0.27
SNX1-210ENST00000560260 C14orf144Q96I85 54 aa13.36□□□□□ -0.27
SNX1-210ENST00000560260 LRP1Q07954 4544 aaKnown RBP13.35□□□□□ -0.27
SNX1-210ENST00000560260 NDUFC2O95298 119 aa13.35□□□□□ -0.27
SNX1-210ENST00000560260 DLEU1O43261 78 aa13.33□□□□□ -0.28
SNX1-210ENST00000560260 SPANXB1Q9NS25 103 aaPredicted RBP13.33□□□□□ -0.28
SNX1-210ENST00000560260 IGLV7-43P04211 117 aa13.32□□□□□ -0.28
SNX1-210ENST00000560260 FLG2Q5D862 2391 aaPredicted RBP13.31□□□□□ -0.28
SNX1-210ENST00000560260 TRBV10-2A0A0K0K1G8 114 aa13.31□□□□□ -0.28
SNX1-210ENST00000560260 SRSF9Q13242 221 aaKnown RBP eCLIP13.31□□□□□ -0.28
SNX1-210ENST00000560260 TRBV10-3A0A0K0K1G6 114 aa13.3□□□□□ -0.28
SNX1-210ENST00000560260 Q6ZVH6 145 aa13.3□□□□□ -0.28
SNX1-210ENST00000560260 MUSTN1Q8IVN3 82 aa13.3□□□□□ -0.28
SNX1-210ENST00000560260 IFITM1P13164 125 aa13.29□□□□□ -0.28
SNX1-210ENST00000560260 BCE1O60756 84 aa13.28□□□□□ -0.28
SNX1-210ENST00000560260 TMEM126AQ9H061 195 aa13.28□□□□□ -0.28
SNX1-210ENST00000560260 PPDPFQ9H3Y8 114 aa13.28□□□□□ -0.28
SNX1-210ENST00000560260 LOC105371267A0A1B0GV96 52 aa13.27□□□□□ -0.29
SNX1-210ENST00000560260 SLC25A34Q6PIV7 304 aa13.27□□□□□ -0.29
SNX1-210ENST00000560260 C2orf91Q6ZV80 131 aa13.27□□□□□ -0.29
SNX1-210ENST00000560260 DDTP30046 118 aa13.26□□□□□ -0.29
SNX1-210ENST00000560260 REG3GQ6UW15 175 aa13.26□□□□□ -0.29
SNX1-210ENST00000560260 PRYO14603 147 aa13.24□□□□□ -0.29
SNX1-210ENST00000560260 IGLV6-57P01721 117 aa13.24□□□□□ -0.29
SNX1-210ENST00000560260 SPINK6Q6UWN8 80 aa13.24□□□□□ -0.29
SNX1-210ENST00000560260 KRTAP13-1Q8IUC0 172 aa13.24□□□□□ -0.29
SNX1-210ENST00000560260 KCNQ1DNQ9H478 68 aa13.24□□□□□ -0.29
SNX1-210ENST00000560260 LINC00337Q8N6G1 96 aa13.23□□□□□ -0.29
SNX1-210ENST00000560260 COPS9Q8WXC6 57 aa13.22□□□□□ -0.29
SNX1-210ENST00000560260 HIGD1BQ9P298 99 aa13.22□□□□□ -0.29
SNX1-210ENST00000560260 SPRR1AP35321 89 aa13.21□□□□□ -0.29
SNX1-210ENST00000560260 S100A7L2Q5SY68 101 aa13.21□□□□□ -0.29
SNX1-210ENST00000560260 ZNF861PO60384 105 aa13.2□□□□□ -0.3
SNX1-210ENST00000560260 PRLHP81277 87 aa13.2□□□□□ -0.3
SNX1-210ENST00000560260 KRTAP4-16G5E9R7 235 aaPredicted RBP13.19□□□□□ -0.3
SNX1-210ENST00000560260 FAM19A1Q7Z5A9 133 aa13.19□□□□□ -0.3
SNX1-210ENST00000560260 HIST1H4GQ99525 98 aa13.19□□□□□ -0.3
SNX1-210ENST00000560260 SMIM6P0DI80 62 aa13.18□□□□□ -0.3
SNX1-210ENST00000560260 S100A12P80511 92 aa13.18□□□□□ -0.3
SNX1-210ENST00000560260 A4D1N5 150 aa13.17□□□□□ -0.3
SNX1-210ENST00000560260 H0Y9J4 135 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms