RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 MEIG1Q5JSS6 88 aa8.92□□□□□ -0.98
USP3-205ENST00000557884 SND1-IT1Q9HBX3 110 aa8.92□□□□□ -0.98
USP3-205ENST00000557884 E9PLD3 99 aa8.91□□□□□ -0.98
USP3-205ENST00000557884 HNRNPA3P51991 378 aaKnown RBP8.91□□□□□ -0.98
USP3-205ENST00000557884 HERV-K104P63124 156 aa8.91□□□□□ -0.98
USP3-205ENST00000557884 ATOH7Q8N100 152 aa8.91□□□□□ -0.98
USP3-205ENST00000557884 C22orf24Q9Y442 160 aa8.91□□□□□ -0.98
USP3-205ENST00000557884 FAT3Q8TDW7 4589 aa8.89□□□□□ -0.99
USP3-205ENST00000557884 UBE2BP63146 152 aa8.89□□□□□ -0.99
USP3-205ENST00000557884 KRTAP11-1Q8IUC1 163 aa8.89□□□□□ -0.99
USP3-205ENST00000557884 PSORS1C2Q9UIG4 136 aa8.89□□□□□ -0.99
USP3-205ENST00000557884 C5orf52A6NGY3 159 aa8.88□□□□□ -0.99
USP3-205ENST00000557884 NMUP48645 174 aa8.88□□□□□ -0.99
USP3-205ENST00000557884 FLG2Q5D862 2391 aaPredicted RBP8.87□□□□□ -0.99
USP3-205ENST00000557884 LRP1Q07954 4544 aaKnown RBP8.87□□□□□ -0.99
USP3-205ENST00000557884 IGKV2D-26A0A0A0MRZ7 120 aa8.87□□□□□ -0.99
USP3-205ENST00000557884 MIR7-3HGQ8N6C7 128 aa8.87□□□□□ -0.99
USP3-205ENST00000557884 PLA2G2DQ9UNK4 145 aa8.87□□□□□ -0.99
USP3-205ENST00000557884 GAGE10A6NGK3 116 aa8.86□□□□□ -0.99
USP3-205ENST00000557884 LBHQ53QV2 105 aaPredicted RBP8.86□□□□□ -0.99
USP3-205ENST00000557884 ANKRD39Q53RE8 183 aa8.86□□□□□ -0.99
USP3-205ENST00000557884 C1orf137Q5JT78 98 aa8.86□□□□□ -0.99
USP3-205ENST00000557884 MRPL55Q7Z7F7 128 aaKnown RBP8.86□□□□□ -0.99
USP3-205ENST00000557884 DAND5Q8N907 189 aa8.86□□□□□ -0.99
USP3-205ENST00000557884 NKAPP1Q8N9T2 125 aa8.86□□□□□ -0.99
USP3-205ENST00000557884 LINC00587B1AMM8 73 aa8.85□□□□□ -0.99
USP3-205ENST00000557884 Q8NDZ9 215 aa8.85□□□□□ -0.99
USP3-205ENST00000557884 TTTY13Q9BZ97 58 aa8.85□□□□□ -0.99
USP3-205ENST00000557884 TP73-AS1Q9UF72 201 aa8.85□□□□□ -0.99
USP3-205ENST00000557884 IGLV5-37A0A075B6J1 123 aa8.84□□□□□ -0.99
USP3-205ENST00000557884 A0A0J9YXY3 114 aa8.84□□□□□ -0.99
USP3-205ENST00000557884 VPREB1P12018 145 aa8.84□□□□□ -0.99
USP3-205ENST00000557884 LINC00167Q96N53 147 aa8.84□□□□□ -0.99
USP3-205ENST00000557884 RPL37AP8A6NKH3 93 aa8.83□□□□□ -1
USP3-205ENST00000557884 ZNF815PA8K554 130 aa8.83□□□□□ -1
USP3-205ENST00000557884 AKR1D1P51857 326 aa8.83□□□□□ -1
USP3-205ENST00000557884 RPL24P83731 157 aaKnown RBP8.83□□□□□ -1
USP3-205ENST00000557884 TMA7Q9Y2S6 64 aaKnown RBP8.83□□□□□ -1
USP3-205ENST00000557884 BOD1L2Q8IYS8 172 aa8.82□□□□□ -1
USP3-205ENST00000557884 SCGB1D1O95968 90 aa8.81□□□□□ -1
USP3-205ENST00000557884 NPC2P61916 151 aa8.8□□□□□ -1
USP3-205ENST00000557884 ADAMTSL4-AS1Q5T5F5 129 aa8.8□□□□□ -1
USP3-205ENST00000557884 IGKV2-28A0A075B6P5 120 aa8.79□□□□□ -1
USP3-205ENST00000557884 NCR3O14931 201 aa8.79□□□□□ -1
USP3-205ENST00000557884 IGKV2D-28P01615 120 aa8.79□□□□□ -1
USP3-205ENST00000557884 IGLV7-43P04211 117 aa8.78□□□□□ -1
USP3-205ENST00000557884 PCP2Q8IVA1 136 aa8.78□□□□□ -1
USP3-205ENST00000557884 HSBP1L1C9JCN9 74 aa8.77□□□□□ -1.01
USP3-205ENST00000557884 SRSF9Q13242 221 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP3-205ENST00000557884 LITAFQ99732 161 aa8.77□□□□□ -1.01
USP3-205ENST00000557884 MIEN1Q9BRT3 115 aa8.77□□□□□ -1.01
USP3-205ENST00000557884 M0R378 163 aa8.76□□□□□ -1.01
USP3-205ENST00000557884 EIF4EBP3O60516 100 aaPredicted RBP8.76□□□□□ -1.01
USP3-205ENST00000557884 SPINK6Q6UWN8 80 aa8.76□□□□□ -1.01
USP3-205ENST00000557884 SOSTDC1Q6X4U4 206 aa8.76□□□□□ -1.01
USP3-205ENST00000557884 SCGB1D4Q6XE38 83 aa8.76□□□□□ -1.01
USP3-205ENST00000557884 IGLV1-50A0A075B6I6 118 aa8.75□□□□□ -1.01
USP3-205ENST00000557884 BCE1O60756 84 aa8.75□□□□□ -1.01
USP3-205ENST00000557884 TIMM17BO60830 172 aa8.75□□□□□ -1.01
USP3-205ENST00000557884 LOC107984156A0A0G2JMH3 177 aa8.74□□□□□ -1.01
USP3-205ENST00000557884 TMEM238C9JI98 176 aa8.74□□□□□ -1.01
USP3-205ENST00000557884 ARL17AQ8IVW1 177 aa8.74□□□□□ -1.01
USP3-205ENST00000557884 DMBT1Q9UGM3 2413 aaPredicted RBP8.73□□□□□ -1.01
USP3-205ENST00000557884 KRTAP29-1A8MX34 341 aaPredicted RBP8.73□□□□□ -1.01
USP3-205ENST00000557884 J3QL48 77 aa8.73□□□□□ -1.01
USP3-205ENST00000557884 LCE2CQ5TA81 110 aa8.72□□□□□ -1.01
USP3-205ENST00000557884 LINC00308Q8TCZ7 52 aa8.72□□□□□ -1.01
USP3-205ENST00000557884 DIRC1Q969H9 104 aa8.72□□□□□ -1.01
USP3-205ENST00000557884 HERC1Q15751 4861 aa8.72□□□□□ -1.01
USP3-205ENST00000557884 TNXBP22105 4242 aa8.72□□□□□ -1.01
USP3-205ENST00000557884 ZNF861PO60384 105 aa8.71□□□□□ -1.02
USP3-205ENST00000557884 OXTP01178 125 aa8.71□□□□□ -1.02
USP3-205ENST00000557884 REG3GQ6UW15 175 aa8.71□□□□□ -1.02
USP3-205ENST00000557884 TMEM126AQ9H061 195 aa8.71□□□□□ -1.02
USP3-205ENST00000557884 SPANXB1Q9NS25 103 aaPredicted RBP8.71□□□□□ -1.02
USP3-205ENST00000557884 TRBV10-3A0A0K0K1G6 114 aa8.7□□□□□ -1.02
USP3-205ENST00000557884 UBE2AP49459 152 aa8.7□□□□□ -1.02
USP3-205ENST00000557884 H0Y9J4 135 aa8.69□□□□□ -1.02
USP3-205ENST00000557884 NDUFC2O95298 119 aa8.69□□□□□ -1.02
USP3-205ENST00000557884 RPL28P46779 137 aaKnown RBP8.69□□□□□ -1.02
USP3-205ENST00000557884 JOSD1Q15040 202 aaPredicted RBP8.69□□□□□ -1.02
USP3-205ENST00000557884 SPANXDQ9BXN6 97 aa8.69□□□□□ -1.02
USP3-205ENST00000557884 SPANXCQ9NY87 97 aa8.69□□□□□ -1.02
USP3-205ENST00000557884 TRBV10-2A0A0K0K1G8 114 aa8.68□□□□□ -1.02
USP3-205ENST00000557884 DDTP30046 118 aa8.68□□□□□ -1.02
USP3-205ENST00000557884 PRLHP81277 87 aa8.68□□□□□ -1.02
USP3-205ENST00000557884 FAM19A1Q7Z5A9 133 aa8.68□□□□□ -1.02
USP3-205ENST00000557884 PAM16Q9Y3D7 125 aa8.68□□□□□ -1.02
USP3-205ENST00000557884 PRYO14603 147 aa8.67□□□□□ -1.02
USP3-205ENST00000557884 S100A7L2Q5SY68 101 aa8.67□□□□□ -1.02
USP3-205ENST00000557884 SPATA45Q537H7 98 aa8.66□□□□□ -1.02
USP3-205ENST00000557884 KRTAP13-1Q8IUC0 172 aa8.66□□□□□ -1.02
USP3-205ENST00000557884 VAMP8Q9BV40 100 aa8.66□□□□□ -1.02
USP3-205ENST00000557884 KCNQ1DNQ9H478 68 aa8.66□□□□□ -1.02
USP3-205ENST00000557884 MUSTN1Q8IVN3 82 aa8.65□□□□□ -1.02
USP3-205ENST00000557884 IGLV6-57P01721 117 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 MT1HL1P0DM35 61 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 COX8AP10176 69 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 IFITM1P13164 125 aa8.64□□□□□ -1.03
USP3-205ENST00000557884 S100A12P80511 92 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms