RNA–Protein interactions for RNA: ENST00000557418.1

FOXA1-205, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 392 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-205ENST00000557418 VAMP8Q9BV40 100 aa13.27□□□□□ -0.29
FOXA1-205ENST00000557418 LINC00474Q9P2X8 69 aa13.27□□□□□ -0.29
FOXA1-205ENST00000557418 PFN2P35080 140 aa13.26□□□□□ -0.29
FOXA1-205ENST00000557418 HNRNPA3P51991 378 aaKnown RBP13.26□□□□□ -0.29
FOXA1-205ENST00000557418 GAGE2BQ13066 116 aa13.26□□□□□ -0.29
FOXA1-205ENST00000557418 PAM16Q9Y3D7 125 aa13.26□□□□□ -0.29
FOXA1-205ENST00000557418 LRP1Q07954 4544 aaKnown RBP13.26□□□□□ -0.29
FOXA1-205ENST00000557418 SPATA45Q537H7 98 aa13.25□□□□□ -0.29
FOXA1-205ENST00000557418 PKHD1L1Q86WI1 4243 aa13.25□□□□□ -0.29
FOXA1-205ENST00000557418 SMIM13P0DJ93 91 aa13.24□□□□□ -0.29
FOXA1-205ENST00000557418 GAGE2EQ4V326 116 aa13.24□□□□□ -0.29
FOXA1-205ENST00000557418 GAGE2DQ9UEU5 116 aa13.24□□□□□ -0.29
FOXA1-205ENST00000557418 MEIG1Q5JSS6 88 aa13.23□□□□□ -0.29
FOXA1-205ENST00000557418 FAT3Q8TDW7 4589 aa13.23□□□□□ -0.29
FOXA1-205ENST00000557418 A0A0U1RRA0 63 aa13.22□□□□□ -0.29
FOXA1-205ENST00000557418 LINC00587B1AMM8 73 aa13.22□□□□□ -0.29
FOXA1-205ENST00000557418 C9orf129Q5T035 196 aaKnown RBP13.22□□□□□ -0.29
FOXA1-205ENST00000557418 LITAFQ99732 161 aa13.22□□□□□ -0.29
FOXA1-205ENST00000557418 COX8AP10176 69 aa13.21□□□□□ -0.29
FOXA1-205ENST00000557418 LINC00158P58513 81 aa13.21□□□□□ -0.29
FOXA1-205ENST00000557418 BOD1L2Q8IYS8 172 aa13.2□□□□□ -0.3
FOXA1-205ENST00000557418 XAGE1AQ9HD64 81 aa13.2□□□□□ -0.3
FOXA1-205ENST00000557418 TP73-AS1Q9UF72 201 aa13.2□□□□□ -0.3
FOXA1-205ENST00000557418 TIMM17BO60830 172 aa13.19□□□□□ -0.3
FOXA1-205ENST00000557418 SMIM6P0DI80 62 aa13.19□□□□□ -0.3
FOXA1-205ENST00000557418 ADAMTSL4-AS1Q5T5F5 129 aa13.19□□□□□ -0.3
FOXA1-205ENST00000557418 SND1-IT1Q9HBX3 110 aa13.19□□□□□ -0.3
FOXA1-205ENST00000557418 MIR7-3HGQ8N6C7 128 aa13.18□□□□□ -0.3
FOXA1-205ENST00000557418 A0A1W2PNN7 141 aa13.17□□□□□ -0.3
FOXA1-205ENST00000557418 DLEU1O43261 78 aa13.17□□□□□ -0.3
FOXA1-205ENST00000557418 C14orf144Q96I85 54 aa13.17□□□□□ -0.3
FOXA1-205ENST00000557418 SCGB1D4Q6XE38 83 aa13.16□□□□□ -0.3
FOXA1-205ENST00000557418 KRTAP7-1Q8IUC3 87 aa13.16□□□□□ -0.3
FOXA1-205ENST00000557418 DAND5Q8N907 189 aa13.16□□□□□ -0.3
FOXA1-205ENST00000557418 FAM168BA1KXE4 195 aa13.15□□□□□ -0.3
FOXA1-205ENST00000557418 SERTAD4-AS1Q5TG53 156 aa13.14□□□□□ -0.31
FOXA1-205ENST00000557418 LOC107984156A0A0G2JMH3 177 aa13.13□□□□□ -0.31
FOXA1-205ENST00000557418 S100A12P80511 92 aa13.13□□□□□ -0.31
FOXA1-205ENST00000557418 ARL17AQ8IVW1 177 aa13.13□□□□□ -0.31
FOXA1-205ENST00000557418 Q8NDZ9 215 aa13.12□□□□□ -0.31
FOXA1-205ENST00000557418 PLA2G2DQ9UNK4 145 aa13.12□□□□□ -0.31
FOXA1-205ENST00000557418 EIF4EBP3O60516 100 aaPredicted RBP13.11□□□□□ -0.31
FOXA1-205ENST00000557418 PRR3P79522 188 aaKnown RBP13.11□□□□□ -0.31
FOXA1-205ENST00000557418 SLC25A34Q6PIV7 304 aa13.11□□□□□ -0.31
FOXA1-205ENST00000557418 SOSTDC1Q6X4U4 206 aa13.11□□□□□ -0.31
FOXA1-205ENST00000557418 SPANXDQ9BXN6 97 aa13.11□□□□□ -0.31
FOXA1-205ENST00000557418 SPANXCQ9NY87 97 aa13.11□□□□□ -0.31
FOXA1-205ENST00000557418 TMEM238C9JI98 176 aa13.1□□□□□ -0.31
FOXA1-205ENST00000557418 VPREB1P12018 145 aa13.08□□□□□ -0.32
FOXA1-205ENST00000557418 FAM19A5Q7Z5A7 132 aaPredicted RBP13.08□□□□□ -0.32
FOXA1-205ENST00000557418 IGLV5-37A0A075B6J1 123 aa13.07□□□□□ -0.32
FOXA1-205ENST00000557418 C2orf91Q6ZV80 131 aa13.07□□□□□ -0.32
FOXA1-205ENST00000557418 LINC00308Q8TCZ7 52 aa13.07□□□□□ -0.32
FOXA1-205ENST00000557418 SPANXB1Q9NS25 103 aaPredicted RBP13.07□□□□□ -0.32
FOXA1-205ENST00000557418 NPC2P61916 151 aa13.06□□□□□ -0.32
FOXA1-205ENST00000557418 Q6ZVH6 145 aa13.06□□□□□ -0.32
FOXA1-205ENST00000557418 C12orf57Q99622 126 aa13.06□□□□□ -0.32
FOXA1-205ENST00000557418 HIGD1BQ9P298 99 aa13.05□□□□□ -0.32
FOXA1-205ENST00000557418 C22orf24Q9Y442 160 aa13.04□□□□□ -0.32
FOXA1-205ENST00000557418 M0QXV9 152 aa13.03□□□□□ -0.32
FOXA1-205ENST00000557418 MT1HL1P0DM35 61 aa13.03□□□□□ -0.32
FOXA1-205ENST00000557418 PHF5AQ7RTV0 110 aaKnown RBP13.03□□□□□ -0.32
FOXA1-205ENST00000557418 LINC00518Q8N0U6 118 aa13.03□□□□□ -0.32
FOXA1-205ENST00000557418 PPDPFQ9H3Y8 114 aa13.03□□□□□ -0.32
FOXA1-205ENST00000557418 IFITM1P13164 125 aa13.02□□□□□ -0.33
FOXA1-205ENST00000557418 RPL24P83731 157 aaKnown RBP13.02□□□□□ -0.33
FOXA1-205ENST00000557418 SPINK6Q6UWN8 80 aa13.02□□□□□ -0.33
FOXA1-205ENST00000557418 UQCR10Q9UDW1 63 aa13.02□□□□□ -0.33
FOXA1-205ENST00000557418 MUSTN1Q8IVN3 82 aa13.01□□□□□ -0.33
FOXA1-205ENST00000557418 MIEN1Q9BRT3 115 aa13.01□□□□□ -0.33
FOXA1-205ENST00000557418 PRO1933Q9H354 126 aa13.01□□□□□ -0.33
FOXA1-205ENST00000557418 SRSF9Q13242 221 aaKnown RBP eCLIP13□□□□□ -0.33
FOXA1-205ENST00000557418 NDUFC2O95298 119 aa12.99□□□□□ -0.33
FOXA1-205ENST00000557418 MRPL55Q7Z7F7 128 aaKnown RBP12.98□□□□□ -0.33
FOXA1-205ENST00000557418 NKAPP1Q8N9T2 125 aa12.98□□□□□ -0.33
FOXA1-205ENST00000557418 LINC01600Q96MT4 127 aa12.98□□□□□ -0.33
FOXA1-205ENST00000557418 REG3GQ6UW15 175 aa12.97□□□□□ -0.33
FOXA1-205ENST00000557418 KRTAP11-1Q8IUC1 163 aa12.97□□□□□ -0.33
FOXA1-205ENST00000557418 COPS9Q8WXC6 57 aa12.96□□□□□ -0.33
FOXA1-205ENST00000557418 LINC00167Q96N53 147 aa12.96□□□□□ -0.33
FOXA1-205ENST00000557418 HIST1H4GQ99525 98 aa12.96□□□□□ -0.33
FOXA1-205ENST00000557418 PSORS1C2Q9UIG4 136 aa12.96□□□□□ -0.33
FOXA1-205ENST00000557418 IGKV2-28A0A075B6P5 120 aa12.95□□□□□ -0.34
FOXA1-205ENST00000557418 M0R378 163 aa12.95□□□□□ -0.34
FOXA1-205ENST00000557418 NCR3O14931 201 aa12.95□□□□□ -0.34
FOXA1-205ENST00000557418 IGKV2D-28P01615 120 aa12.95□□□□□ -0.34
FOXA1-205ENST00000557418 LBHQ53QV2 105 aaPredicted RBP12.95□□□□□ -0.34
FOXA1-205ENST00000557418 TRBV10-2A0A0K0K1G8 114 aa12.94□□□□□ -0.34
FOXA1-205ENST00000557418 GAGE10A6NGK3 116 aa12.93□□□□□ -0.34
FOXA1-205ENST00000557418 TAL2Q16559 108 aa12.93□□□□□ -0.34
FOXA1-205ENST00000557418 C1orf137Q5JT78 98 aa12.93□□□□□ -0.34
FOXA1-205ENST00000557418 IGLV1-50A0A075B6I6 118 aa12.9□□□□□ -0.34
FOXA1-205ENST00000557418 A4D1N5 150 aa12.9□□□□□ -0.34
FOXA1-205ENST00000557418 RPL37AP8A6NKH3 93 aa12.9□□□□□ -0.34
FOXA1-205ENST00000557418 TNXBP22105 4242 aa12.89□□□□□ -0.35
FOXA1-205ENST00000557418 UBE2BP63146 152 aa12.89□□□□□ -0.35
FOXA1-205ENST00000557418 HMCN2Q8NDA2 5059 aa12.89□□□□□ -0.35
FOXA1-205ENST00000557418 HSD52Q0P140 79 aa12.88□□□□□ -0.35
FOXA1-205ENST00000557418 CEND1Q8N111 149 aa12.88□□□□□ -0.35
FOXA1-205ENST00000557418 TRBV10-3A0A0K0K1G6 114 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms