RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 C1orf137Q5JT78 98 aa8.58□□□□□ -1.04
VPS33B-206ENST00000557358 PLEKHB2Q96CS7 222 aa8.58□□□□□ -1.04
VPS33B-206ENST00000557358 PSORS1C2Q9UIG4 136 aa8.57□□□□□ -1.04
VPS33B-206ENST00000557358 PAM16Q9Y3D7 125 aa8.57□□□□□ -1.04
VPS33B-206ENST00000557358 J3QQQ9 107 aa8.56□□□□□ -1.04
VPS33B-206ENST00000557358 LGALS3P17931 250 aaKnown RBP8.56□□□□□ -1.04
VPS33B-206ENST00000557358 NMUP48645 174 aa8.56□□□□□ -1.04
VPS33B-206ENST00000557358 TSPEAR-AS2P59090 65 aa8.56□□□□□ -1.04
VPS33B-206ENST00000557358 S100A12P80511 92 aa8.56□□□□□ -1.04
VPS33B-206ENST00000557358 SPATA45Q537H7 98 aa8.56□□□□□ -1.04
VPS33B-206ENST00000557358 C9orf129Q5T035 196 aaKnown RBP8.56□□□□□ -1.04
VPS33B-206ENST00000557358 XAGE1AQ9HD64 81 aa8.56□□□□□ -1.04
VPS33B-206ENST00000557358 IGKV2D-26A0A0A0MRZ7 120 aa8.55□□□□□ -1.04
VPS33B-206ENST00000557358 SERTAD4-AS1Q5TG53 156 aa8.54□□□□□ -1.04
VPS33B-206ENST00000557358 COX17Q14061 63 aa8.53□□□□□ -1.04
VPS33B-206ENST00000557358 NKAPP1Q8N9T2 125 aa8.53□□□□□ -1.04
VPS33B-206ENST00000557358 DIRC1Q969H9 104 aa8.53□□□□□ -1.04
VPS33B-206ENST00000557358 TP73-AS1Q9UF72 201 aa8.53□□□□□ -1.04
VPS33B-206ENST00000557358 PFN2P35080 140 aa8.52□□□□□ -1.05
VPS33B-206ENST00000557358 C12orf57Q99622 126 aa8.52□□□□□ -1.05
VPS33B-206ENST00000557358 NDUFA12Q9UI09 145 aa8.52□□□□□ -1.05
VPS33B-206ENST00000557358 C22orf24Q9Y442 160 aa8.52□□□□□ -1.05
VPS33B-206ENST00000557358 PKHD1L1Q86WI1 4243 aa8.52□□□□□ -1.05
VPS33B-206ENST00000557358 MYMXA0A1B0GTQ4 84 aa8.51□□□□□ -1.05
VPS33B-206ENST00000557358 IGLV7-43P04211 117 aa8.51□□□□□ -1.05
VPS33B-206ENST00000557358 SRSF9Q13242 221 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS33B-206ENST00000557358 MRPL55Q7Z7F7 128 aaKnown RBP8.51□□□□□ -1.05
VPS33B-206ENST00000557358 ZNF625Q96I27 306 aaPredicted RBP8.51□□□□□ -1.05
VPS33B-206ENST00000557358 TTTY13Q9BZ97 58 aa8.51□□□□□ -1.05
VPS33B-206ENST00000557358 ERG28Q9UKR5 140 aa8.51□□□□□ -1.05
VPS33B-206ENST00000557358 ZNF815PA8K554 130 aa8.5□□□□□ -1.05
VPS33B-206ENST00000557358 PCP2Q8IVA1 136 aa8.5□□□□□ -1.05
VPS33B-206ENST00000557358 LINC00518Q8N0U6 118 aa8.5□□□□□ -1.05
VPS33B-206ENST00000557358 PLA2G2DQ9UNK4 145 aa8.5□□□□□ -1.05
VPS33B-206ENST00000557358 LINC00587B1AMM8 73 aa8.49□□□□□ -1.05
VPS33B-206ENST00000557358 COX8AP10176 69 aa8.49□□□□□ -1.05
VPS33B-206ENST00000557358 HERV-K104P63124 156 aa8.49□□□□□ -1.05
VPS33B-206ENST00000557358 RPL24P83731 157 aaKnown RBP8.49□□□□□ -1.05
VPS33B-206ENST00000557358 LINC01600Q96MT4 127 aa8.49□□□□□ -1.05
VPS33B-206ENST00000557358 HERC1Q15751 4861 aa8.49□□□□□ -1.05
VPS33B-206ENST00000557358 LINC00158P58513 81 aa8.47□□□□□ -1.05
VPS33B-206ENST00000557358 MEIG1Q5JSS6 88 aa8.47□□□□□ -1.05
VPS33B-206ENST00000557358 KRTAP7-1Q8IUC3 87 aa8.47□□□□□ -1.05
VPS33B-206ENST00000557358 BOD1L2Q8IYS8 172 aa8.47□□□□□ -1.05
VPS33B-206ENST00000557358 C14orf144Q96I85 54 aa8.47□□□□□ -1.05
VPS33B-206ENST00000557358 LRP1Q07954 4544 aaKnown RBP8.47□□□□□ -1.05
VPS33B-206ENST00000557358 A0A0J9YXY3 114 aa8.46□□□□□ -1.06
VPS33B-206ENST00000557358 DLEU1O43261 78 aa8.46□□□□□ -1.06
VPS33B-206ENST00000557358 SLC25A34Q6PIV7 304 aa8.46□□□□□ -1.06
VPS33B-206ENST00000557358 SCGB1D4Q6XE38 83 aa8.46□□□□□ -1.06
VPS33B-206ENST00000557358 FAT3Q8TDW7 4589 aa8.46□□□□□ -1.06
VPS33B-206ENST00000557358 SND1-IT1Q9HBX3 110 aa8.45□□□□□ -1.06
VPS33B-206ENST00000557358 IGLV5-37A0A075B6J1 123 aa8.44□□□□□ -1.06
VPS33B-206ENST00000557358 H0Y9J4 135 aa8.44□□□□□ -1.06
VPS33B-206ENST00000557358 RPL28P46779 137 aaKnown RBP8.44□□□□□ -1.06
VPS33B-206ENST00000557358 LINC00167Q96N53 147 aa8.44□□□□□ -1.06
VPS33B-206ENST00000557358 GAGE10A6NGK3 116 aa8.43□□□□□ -1.06
VPS33B-206ENST00000557358 RPL37AP8A6NKH3 93 aa8.43□□□□□ -1.06
VPS33B-206ENST00000557358 ZNF861PO60384 105 aa8.43□□□□□ -1.06
VPS33B-206ENST00000557358 KRTAP11-1Q8IUC1 163 aa8.43□□□□□ -1.06
VPS33B-206ENST00000557358 PRO1933Q9H354 126 aa8.43□□□□□ -1.06
VPS33B-206ENST00000557358 UQCR10Q9UDW1 63 aa8.43□□□□□ -1.06
VPS33B-206ENST00000557358 TSTD3H0UI37 97 aa8.42□□□□□ -1.06
VPS33B-206ENST00000557358 BCE1O60756 84 aa8.42□□□□□ -1.06
VPS33B-206ENST00000557358 TIMM17BO60830 172 aa8.42□□□□□ -1.06
VPS33B-206ENST00000557358 SMIM13P0DJ93 91 aa8.42□□□□□ -1.06
VPS33B-206ENST00000557358 MT1HL1P0DM35 61 aa8.42□□□□□ -1.06
VPS33B-206ENST00000557358 A0A0U1RRA0 63 aa8.41□□□□□ -1.06
VPS33B-206ENST00000557358 TMEM238C9JI98 176 aa8.41□□□□□ -1.06
VPS33B-206ENST00000557358 UBE2AP49459 152 aa8.41□□□□□ -1.06
VPS33B-206ENST00000557358 C2orf91Q6ZV80 131 aa8.4□□□□□ -1.06
VPS33B-206ENST00000557358 LITAFQ99732 161 aa8.4□□□□□ -1.06
VPS33B-206ENST00000557358 VPREB1P12018 145 aa8.39□□□□□ -1.07
VPS33B-206ENST00000557358 MIEN1Q9BRT3 115 aa8.39□□□□□ -1.07
VPS33B-206ENST00000557358 HIGD1BQ9P298 99 aa8.39□□□□□ -1.07
VPS33B-206ENST00000557358 IGLV1-50A0A075B6I6 118 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 IGKV2-28A0A075B6P5 120 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 IGKV2D-28P01615 120 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 RPL13AP40429 203 aaKnown RBP8.38□□□□□ -1.07
VPS33B-206ENST00000557358 MIR7-3HGQ8N6C7 128 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 DAND5Q8N907 189 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 SPANXDQ9BXN6 97 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 SPANXB1Q9NS25 103 aaPredicted RBP8.38□□□□□ -1.07
VPS33B-206ENST00000557358 SPANXCQ9NY87 97 aa8.38□□□□□ -1.07
VPS33B-206ENST00000557358 KRTAP10-8P60410 259 aa8.37□□□□□ -1.07
VPS33B-206ENST00000557358 ADAMTSL4-AS1Q5T5F5 129 aa8.37□□□□□ -1.07
VPS33B-206ENST00000557358 M0R378 163 aa8.36□□□□□ -1.07
VPS33B-206ENST00000557358 Q6ZVH6 145 aa8.36□□□□□ -1.07
VPS33B-206ENST00000557358 NPC2P61916 151 aa8.35□□□□□ -1.07
VPS33B-206ENST00000557358 FAM19A1Q7Z5A9 133 aa8.34□□□□□ -1.07
VPS33B-206ENST00000557358 COPS9Q8WXC6 57 aa8.34□□□□□ -1.07
VPS33B-206ENST00000557358 HIST1H4GQ99525 98 aa8.34□□□□□ -1.07
VPS33B-206ENST00000557358 IFITM1P13164 125 aa8.33□□□□□ -1.08
VPS33B-206ENST00000557358 TAL2Q16559 108 aa8.33□□□□□ -1.08
VPS33B-206ENST00000557358 PRR26Q8N8Z3 221 aa8.33□□□□□ -1.08
VPS33B-206ENST00000557358 LINC00308Q8TCZ7 52 aa8.33□□□□□ -1.08
VPS33B-206ENST00000557358 TMEM126AQ9H061 195 aa8.33□□□□□ -1.08
VPS33B-206ENST00000557358 HSD52Q0P140 79 aa8.32□□□□□ -1.08
VPS33B-206ENST00000557358 SOSTDC1Q6X4U4 206 aa8.32□□□□□ -1.08
VPS33B-206ENST00000557358 LOC107984156A0A0G2JMH3 177 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms