RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MYMXA0A1B0GTQ4 84 aa8.43□□□□□ -1.06
SHMT2-228ENST00000557302 HNRNPA3P51991 378 aaKnown RBP8.43□□□□□ -1.06
SHMT2-228ENST00000557302 HERV-K104P63124 156 aa8.43□□□□□ -1.06
SHMT2-228ENST00000557302 J3QQQ9 107 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 LINC00158P58513 81 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 TSPEAR-AS2P59090 65 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 UBE2BP63146 152 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 SND1-IT1Q9HBX3 110 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 PSORS1C2Q9UIG4 136 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 C22orf24Q9Y442 160 aa8.42□□□□□ -1.06
SHMT2-228ENST00000557302 C20orf202A1L168 122 aa8.41□□□□□ -1.06
SHMT2-228ENST00000557302 LGALS3P17931 250 aaKnown RBP8.41□□□□□ -1.06
SHMT2-228ENST00000557302 S100A2P29034 98 aa8.41□□□□□ -1.06
SHMT2-228ENST00000557302 LBHQ53QV2 105 aaPredicted RBP8.41□□□□□ -1.06
SHMT2-228ENST00000557302 MEIG1Q5JSS6 88 aa8.41□□□□□ -1.06
SHMT2-228ENST00000557302 PLA2G2DQ9UNK4 145 aa8.41□□□□□ -1.06
SHMT2-228ENST00000557302 A0A0U1RRA0 63 aa8.4□□□□□ -1.06
SHMT2-228ENST00000557302 LINC00587B1AMM8 73 aa8.4□□□□□ -1.06
SHMT2-228ENST00000557302 NMUP48645 174 aa8.4□□□□□ -1.06
SHMT2-228ENST00000557302 TP73-AS1Q9UF72 201 aa8.4□□□□□ -1.06
SHMT2-228ENST00000557302 PKHD1L1Q86WI1 4243 aa8.4□□□□□ -1.06
SHMT2-228ENST00000557302 E9PLD3 99 aa8.39□□□□□ -1.07
SHMT2-228ENST00000557302 SMIM13P0DJ93 91 aa8.39□□□□□ -1.07
SHMT2-228ENST00000557302 C1orf137Q5JT78 98 aa8.39□□□□□ -1.07
SHMT2-228ENST00000557302 MRPL55Q7Z7F7 128 aaKnown RBP8.39□□□□□ -1.07
SHMT2-228ENST00000557302 NKAPP1Q8N9T2 125 aa8.39□□□□□ -1.07
SHMT2-228ENST00000557302 HIST1H2BLQ99880 126 aa8.39□□□□□ -1.07
SHMT2-228ENST00000557302 IGLV5-37A0A075B6J1 123 aa8.38□□□□□ -1.07
SHMT2-228ENST00000557302 KRTAP11-1Q8IUC1 163 aa8.38□□□□□ -1.07
SHMT2-228ENST00000557302 AKR1D1P51857 326 aa8.36□□□□□ -1.07
SHMT2-228ENST00000557302 RPL24P83731 157 aaKnown RBP8.36□□□□□ -1.07
SHMT2-228ENST00000557302 MIR7-3HGQ8N6C7 128 aa8.36□□□□□ -1.07
SHMT2-228ENST00000557302 LRP1Q07954 4544 aaKnown RBP8.35□□□□□ -1.07
SHMT2-228ENST00000557302 GAGE10A6NGK3 116 aa8.35□□□□□ -1.07
SHMT2-228ENST00000557302 VPREB1P12018 145 aa8.35□□□□□ -1.07
SHMT2-228ENST00000557302 SPINK6Q6UWN8 80 aa8.35□□□□□ -1.07
SHMT2-228ENST00000557302 LINC00167Q96N53 147 aa8.35□□□□□ -1.07
SHMT2-228ENST00000557302 FAT3Q8TDW7 4589 aa8.34□□□□□ -1.07
SHMT2-228ENST00000557302 KRTAP29-1A8MX34 341 aaPredicted RBP8.34□□□□□ -1.07
SHMT2-228ENST00000557302 OXTP01178 125 aa8.34□□□□□ -1.07
SHMT2-228ENST00000557302 IGLV7-43P04211 117 aa8.34□□□□□ -1.07
SHMT2-228ENST00000557302 SMIM6P0DI80 62 aa8.34□□□□□ -1.07
SHMT2-228ENST00000557302 SRSF9Q13242 221 aaKnown RBP eCLIP8.34□□□□□ -1.07
SHMT2-228ENST00000557302 RPL37AP8A6NKH3 93 aa8.33□□□□□ -1.08
SHMT2-228ENST00000557302 IGKV2D-26A0A0A0MRZ7 120 aa8.32□□□□□ -1.08
SHMT2-228ENST00000557302 A0A0J9YXY3 114 aa8.32□□□□□ -1.08
SHMT2-228ENST00000557302 BOD1L2Q8IYS8 172 aa8.32□□□□□ -1.08
SHMT2-228ENST00000557302 ATOH7Q8N100 152 aa8.32□□□□□ -1.08
SHMT2-228ENST00000557302 DAND5Q8N907 189 aa8.32□□□□□ -1.08
SHMT2-228ENST00000557302 Q8NDZ9 215 aa8.32□□□□□ -1.08
SHMT2-228ENST00000557302 IGKV2-28A0A075B6P5 120 aa8.3□□□□□ -1.08
SHMT2-228ENST00000557302 ZNF815PA8K554 130 aa8.3□□□□□ -1.08
SHMT2-228ENST00000557302 IGKV2D-28P01615 120 aa8.3□□□□□ -1.08
SHMT2-228ENST00000557302 JOSD1Q15040 202 aaPredicted RBP8.3□□□□□ -1.08
SHMT2-228ENST00000557302 REG3GQ6UW15 175 aa8.3□□□□□ -1.08
SHMT2-228ENST00000557302 M0R378 163 aa8.29□□□□□ -1.08
SHMT2-228ENST00000557302 ANKRD39Q53RE8 183 aa8.29□□□□□ -1.08
SHMT2-228ENST00000557302 DIRC1Q969H9 104 aa8.29□□□□□ -1.08
SHMT2-228ENST00000557302 MIEN1Q9BRT3 115 aa8.29□□□□□ -1.08
SHMT2-228ENST00000557302 IGLV1-50A0A075B6I6 118 aa8.28□□□□□ -1.08
SHMT2-228ENST00000557302 LOC107984156A0A0G2JMH3 177 aa8.28□□□□□ -1.08
SHMT2-228ENST00000557302 BCE1O60756 84 aa8.28□□□□□ -1.08
SHMT2-228ENST00000557302 ARL17AQ8IVW1 177 aa8.28□□□□□ -1.08
SHMT2-228ENST00000557302 LINC00518Q8N0U6 118 aa8.28□□□□□ -1.08
SHMT2-228ENST00000557302 TTTY13Q9BZ97 58 aa8.28□□□□□ -1.08
SHMT2-228ENST00000557302 NCR3O14931 201 aa8.27□□□□□ -1.09
SHMT2-228ENST00000557302 TIMM17BO60830 172 aa8.27□□□□□ -1.09
SHMT2-228ENST00000557302 ADAMTSL4-AS1Q5T5F5 129 aa8.27□□□□□ -1.09
SHMT2-228ENST00000557302 HSBP1L1C9JCN9 74 aa8.26□□□□□ -1.09
SHMT2-228ENST00000557302 H0Y9J4 135 aa8.26□□□□□ -1.09
SHMT2-228ENST00000557302 ZNF861PO60384 105 aa8.26□□□□□ -1.09
SHMT2-228ENST00000557302 PYY3Q5JQD4 70 aa8.26□□□□□ -1.09
SHMT2-228ENST00000557302 RPL28P46779 137 aaKnown RBP8.25□□□□□ -1.09
SHMT2-228ENST00000557302 NPC2P61916 151 aa8.25□□□□□ -1.09
SHMT2-228ENST00000557302 SCGB1D4Q6XE38 83 aa8.25□□□□□ -1.09
SHMT2-228ENST00000557302 LITAFQ99732 161 aa8.25□□□□□ -1.09
SHMT2-228ENST00000557302 TMEM126AQ9H061 195 aa8.25□□□□□ -1.09
SHMT2-228ENST00000557302 TMEM238C9JI98 176 aa8.24□□□□□ -1.09
SHMT2-228ENST00000557302 SCGB1D1O95968 90 aa8.24□□□□□ -1.09
SHMT2-228ENST00000557302 UBE2AP49459 152 aa8.24□□□□□ -1.09
SHMT2-228ENST00000557302 LINC01600Q96MT4 127 aa8.24□□□□□ -1.09
SHMT2-228ENST00000557302 LOC100996750A0A140TA64 210 aa8.23□□□□□ -1.09
SHMT2-228ENST00000557302 NDUFC2O95298 119 aa8.23□□□□□ -1.09
SHMT2-228ENST00000557302 SOSTDC1Q6X4U4 206 aa8.23□□□□□ -1.09
SHMT2-228ENST00000557302 PCP2Q8IVA1 136 aa8.23□□□□□ -1.09
SHMT2-228ENST00000557302 C12orf57Q99622 126 aa8.23□□□□□ -1.09
SHMT2-228ENST00000557302 KRTAP4-6Q9BYQ5 205 aa8.23□□□□□ -1.09
SHMT2-228ENST00000557302 SPANXB1Q9NS25 103 aaPredicted RBP8.23□□□□□ -1.09
SHMT2-228ENST00000557302 TRBV10-2A0A0K0K1G8 114 aa8.22□□□□□ -1.09
SHMT2-228ENST00000557302 LINC00308Q8TCZ7 52 aa8.22□□□□□ -1.09
SHMT2-228ENST00000557302 HMCN2Q8NDA2 5059 aa8.21□□□□□ -1.09
SHMT2-228ENST00000557302 TRBV10-3A0A0K0K1G6 114 aa8.21□□□□□ -1.1
SHMT2-228ENST00000557302 PRYO14603 147 aa8.21□□□□□ -1.1
SHMT2-228ENST00000557302 EIF4EBP3O60516 100 aaPredicted RBP8.21□□□□□ -1.1
SHMT2-228ENST00000557302 MT1HL1P0DM35 61 aa8.21□□□□□ -1.1
SHMT2-228ENST00000557302 FAM19A1Q7Z5A9 133 aa8.21□□□□□ -1.1
SHMT2-228ENST00000557302 S100A12P80511 92 aa8.2□□□□□ -1.1
SHMT2-228ENST00000557302 KRTAP13-1Q8IUC0 172 aa8.2□□□□□ -1.1
SHMT2-228ENST00000557302 KCNQ1DNQ9H478 68 aa8.2□□□□□ -1.1
SHMT2-228ENST00000557302 DDTP30046 118 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms