RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PAM16Q9Y3D7 125 aa8.05□□□□□ -1.12
SHMT2-227ENST00000557269 LINC00587B1AMM8 73 aa8.03□□□□□ -1.12
SHMT2-227ENST00000557269 EIF4EBP3O60516 100 aaPredicted RBP8.03□□□□□ -1.12
SHMT2-227ENST00000557269 PHF5AQ7RTV0 110 aaKnown RBP8.03□□□□□ -1.12
SHMT2-227ENST00000557269 VAMP8Q9BV40 100 aa8.03□□□□□ -1.12
SHMT2-227ENST00000557269 SPATA45Q537H7 98 aa8.02□□□□□ -1.13
SHMT2-227ENST00000557269 TIMM17BO60830 172 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 NPC2P61916 151 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 SOSTDC1Q6X4U4 206 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 KRTAP11-1Q8IUC1 163 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 LINC00528Q8N1L1 170 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 C14orf144Q96I85 54 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 PLA2G2DQ9UNK4 145 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 C22orf24Q9Y442 160 aa8.01□□□□□ -1.13
SHMT2-227ENST00000557269 M0QXV9 152 aa8□□□□□ -1.13
SHMT2-227ENST00000557269 COX8AP10176 69 aa8□□□□□ -1.13
SHMT2-227ENST00000557269 VPREB1P12018 145 aa8□□□□□ -1.13
SHMT2-227ENST00000557269 SCGB1D4Q6XE38 83 aa8□□□□□ -1.13
SHMT2-227ENST00000557269 BOD1L2Q8IYS8 172 aa8□□□□□ -1.13
SHMT2-227ENST00000557269 LOC107984156A0A0G2JMH3 177 aa7.99□□□□□ -1.13
SHMT2-227ENST00000557269 PRR3P79522 188 aaKnown RBP7.99□□□□□ -1.13
SHMT2-227ENST00000557269 ARL17AQ8IVW1 177 aa7.99□□□□□ -1.13
SHMT2-227ENST00000557269 IGLV5-37A0A075B6J1 123 aa7.98□□□□□ -1.13
SHMT2-227ENST00000557269 Q8N1X5 172 aa7.98□□□□□ -1.13
SHMT2-227ENST00000557269 FAT1Q14517 4588 aa7.97□□□□□ -1.13
SHMT2-227ENST00000557269 LINC00308Q8TCZ7 52 aa7.97□□□□□ -1.13
SHMT2-227ENST00000557269 KRTAP4-5Q9BYR2 181 aa7.97□□□□□ -1.13
SHMT2-227ENST00000557269 HERC2O95714 4834 aa7.96□□□□□ -1.13
SHMT2-227ENST00000557269 GAGE10A6NGK3 116 aa7.96□□□□□ -1.14
SHMT2-227ENST00000557269 DLEU1O43261 78 aa7.96□□□□□ -1.14
SHMT2-227ENST00000557269 KRTAP10-4P60372 401 aaPredicted RBP7.96□□□□□ -1.14
SHMT2-227ENST00000557269 Q5VSD8 79 aa7.96□□□□□ -1.14
SHMT2-227ENST00000557269 MRPL55Q7Z7F7 128 aaKnown RBP7.96□□□□□ -1.14
SHMT2-227ENST00000557269 C7orf33Q8WU49 177 aa7.96□□□□□ -1.14
SHMT2-227ENST00000557269 SPANXDQ9BXN6 97 aa7.96□□□□□ -1.14
SHMT2-227ENST00000557269 SPANXCQ9NY87 97 aa7.96□□□□□ -1.14
SHMT2-227ENST00000557269 TMEM238C9JI98 176 aa7.95□□□□□ -1.14
SHMT2-227ENST00000557269 S100A12P80511 92 aa7.95□□□□□ -1.14
SHMT2-227ENST00000557269 RPL24P83731 157 aaKnown RBP7.95□□□□□ -1.14
SHMT2-227ENST00000557269 LINC00167Q96N53 147 aa7.95□□□□□ -1.14
SHMT2-227ENST00000557269 RPL37AP8A6NKH3 93 aa7.94□□□□□ -1.14
SHMT2-227ENST00000557269 NCR3O14931 201 aa7.94□□□□□ -1.14
SHMT2-227ENST00000557269 NKAPP1Q8N9T2 125 aa7.94□□□□□ -1.14
SHMT2-227ENST00000557269 FAM229AH3BQW9 127 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 SMIM6P0DI80 62 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 RPL37AP61513 92 aaKnown RBP7.93□□□□□ -1.14
SHMT2-227ENST00000557269 LBHQ53QV2 105 aaPredicted RBP7.93□□□□□ -1.14
SHMT2-227ENST00000557269 SLC25A34Q6PIV7 304 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 C2orf91Q6ZV80 131 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 MUSTN1Q8IVN3 82 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 MIEN1Q9BRT3 115 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 PSORS1C2Q9UIG4 136 aa7.93□□□□□ -1.14
SHMT2-227ENST00000557269 UBE2BP63146 152 aa7.92□□□□□ -1.14
SHMT2-227ENST00000557269 SPANXB1Q9NS25 103 aaPredicted RBP7.92□□□□□ -1.14
SHMT2-227ENST00000557269 M0R378 163 aa7.91□□□□□ -1.14
SHMT2-227ENST00000557269 NDUFC2O95298 119 aa7.91□□□□□ -1.14
SHMT2-227ENST00000557269 IGLV1-50A0A075B6I6 118 aa7.9□□□□□ -1.14
SHMT2-227ENST00000557269 IGKV2-28A0A075B6P5 120 aa7.9□□□□□ -1.14
SHMT2-227ENST00000557269 IGKV2D-28P01615 120 aa7.9□□□□□ -1.14
SHMT2-227ENST00000557269 IFITM1P13164 125 aa7.9□□□□□ -1.14
SHMT2-227ENST00000557269 HNRNPA3P51991 378 aaKnown RBP7.9□□□□□ -1.14
SHMT2-227ENST00000557269 SRSF9Q13242 221 aaKnown RBP eCLIP7.9□□□□□ -1.14
SHMT2-227ENST00000557269 Q6ZVH6 145 aa7.9□□□□□ -1.14
SHMT2-227ENST00000557269 C12orf57Q99622 126 aa7.9□□□□□ -1.14
SHMT2-227ENST00000557269 PLA2G1BP04054 148 aaKnown RBP7.89□□□□□ -1.15
SHMT2-227ENST00000557269 PRO1933Q9H354 126 aa7.89□□□□□ -1.15
SHMT2-227ENST00000557269 HIGD1BQ9P298 99 aa7.89□□□□□ -1.15
SHMT2-227ENST00000557269 TRBV10-3A0A0K0K1G6 114 aa7.88□□□□□ -1.15
SHMT2-227ENST00000557269 TRBV10-2A0A0K0K1G8 114 aa7.88□□□□□ -1.15
SHMT2-227ENST00000557269 C1orf137Q5JT78 98 aa7.88□□□□□ -1.15
SHMT2-227ENST00000557269 HIST1H4GQ99525 98 aa7.88□□□□□ -1.15
SHMT2-227ENST00000557269 PPDPFQ9H3Y8 114 aa7.88□□□□□ -1.15
SHMT2-227ENST00000557269 VPS13BQ7Z7G8 4022 aa7.88□□□□□ -1.15
SHMT2-227ENST00000557269 LINC00337Q8N6G1 96 aa7.86□□□□□ -1.15
SHMT2-227ENST00000557269 UQCR10Q9UDW1 63 aa7.86□□□□□ -1.15
SHMT2-227ENST00000557269 A4D1N5 150 aa7.85□□□□□ -1.15
SHMT2-227ENST00000557269 IGLV6-57P01721 117 aa7.85□□□□□ -1.15
SHMT2-227ENST00000557269 DDTP30046 118 aa7.85□□□□□ -1.15
SHMT2-227ENST00000557269 LINC00518Q8N0U6 118 aa7.85□□□□□ -1.15
SHMT2-227ENST00000557269 COPS9Q8WXC6 57 aa7.85□□□□□ -1.15
SHMT2-227ENST00000557269 SRRM2Q9UQ35 2752 aaKnown RBP7.85□□□□□ -1.15
SHMT2-227ENST00000557269 IGLV7-43P04211 117 aa7.84□□□□□ -1.15
SHMT2-227ENST00000557269 S100A7L2Q5SY68 101 aa7.84□□□□□ -1.15
SHMT2-227ENST00000557269 TMEM126AQ9H061 195 aa7.84□□□□□ -1.15
SHMT2-227ENST00000557269 KCNQ1DNQ9H478 68 aa7.84□□□□□ -1.15
SHMT2-227ENST00000557269 BCE1O60756 84 aa7.83□□□□□ -1.16
SHMT2-227ENST00000557269 REG3GQ6UW15 175 aa7.83□□□□□ -1.16
SHMT2-227ENST00000557269 OR13C6PQ8NH95 151 aa7.83□□□□□ -1.16
SHMT2-227ENST00000557269 PRYO14603 147 aa7.81□□□□□ -1.16
SHMT2-227ENST00000557269 SPRR1AP35321 89 aa7.81□□□□□ -1.16
SHMT2-227ENST00000557269 TAL2Q16559 108 aa7.81□□□□□ -1.16
SHMT2-227ENST00000557269 CEND1Q8N111 149 aa7.81□□□□□ -1.16
SHMT2-227ENST00000557269 ABCA13Q86UQ4 5058 aa7.8□□□□□ -1.16
SHMT2-227ENST00000557269 A6NDN8 102 aa7.8□□□□□ -1.16
SHMT2-227ENST00000557269 KRTAP4-16G5E9R7 235 aaPredicted RBP7.8□□□□□ -1.16
SHMT2-227ENST00000557269 TSTD3H0UI37 97 aa7.8□□□□□ -1.16
SHMT2-227ENST00000557269 INAFM2P0DMQ5 153 aa7.8□□□□□ -1.16
SHMT2-227ENST00000557269 PRLHP81277 87 aa7.8□□□□□ -1.16
SHMT2-227ENST00000557269 KRTAP13-1Q8IUC0 172 aa7.8□□□□□ -1.16
SHMT2-227ENST00000557269 TRAV23DV6A0A075B6W5 121 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms