RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 TRAV1-1A0A0B4J248 108 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 C7orf77A4D0Y5 90 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 I3L3M4 83 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 TCAPO15273 167 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 CXCL1P09341 107 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 ESDP10768 282 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 FCER1GP30273 86 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 DAND5Q8N907 189 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 S100ZQ8WXG8 99 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 SMDT1Q9H4I9 107 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 ST20Q9HBF5 79 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 C8orf17Q9NRJ1 99 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 CDC42SE2Q9NRR3 84 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 LINC00474Q9P2X8 69 aa1.28□□□□□ -2.2
SCFD1-219ENST00000556413 FLGP20930 4061 aaPredicted RBP1.27□□□□□ -2.21
SCFD1-219ENST00000556413 LOC389332A0A1B0GUA5 103 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 KANTRA0A1W2PQU2 76 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 ZNF727A8MUV8 499 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 HIGD1CA8MV81 97 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 TMEM238C9JI98 176 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 NDUFC2-KCTD14E9PQ53 114 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 NDUFA1O15239 70 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 GATCO43716 136 aaKnown RBP1.27□□□□□ -2.21
SCFD1-219ENST00000556413 RAB4AP20338 218 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 RPS20P60866 119 aaKnown RBP1.27□□□□□ -2.21
SCFD1-219ENST00000556413 RAB5BP61020 215 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 RPL23P62829 140 aaKnown RBP1.27□□□□□ -2.21
SCFD1-219ENST00000556413 MRPL54Q6P161 138 aaKnown RBP1.27□□□□□ -2.21
SCFD1-219ENST00000556413 FAM231DQ6ZW35 169 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 MBD3L1Q8WWY6 194 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 ISOC2Q96AB3 205 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 C22orf24Q9Y442 160 aa1.27□□□□□ -2.21
SCFD1-219ENST00000556413 SYNE2Q8WXH0 6885 aaKnown RBP1.27□□□□□ -2.21
SCFD1-219ENST00000556413 SMIM26A0A096LP01 95 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 D6R8Y8 96 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 NPYP01303 97 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 S100A9P06702 114 aaKnown RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 ZNF25P17030 456 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 TAGLN2P37802 199 aaKnown RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 POLR2KP53803 58 aaKnown RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 HBBP68871 147 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 MRPL51Q4U2R6 128 aaKnown RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 SPINT4Q6UDR6 99 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 SMIM15Q7Z3B0 74 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 C9orf62Q8N4C0 152 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 SPANXA2-OT1Q8N9U9 137 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 Q8NDZ9 215 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 NKX6-2Q9C056 277 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 MANBALQ9NQG1 85 aa1.26□□□□□ -2.21
SCFD1-219ENST00000556413 MRPL35Q9NZE8 188 aaKnown RBP1.26□□□□□ -2.21
SCFD1-219ENST00000556413 TGIF2-C20orf24A0A0A6YYL0 155 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 IGHV3OR16-9A0A0B4J2B5 98 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 TRBV6-5A0A0K0K1A5 114 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 TRBV27A0A0K0K1C4 114 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 A0A1B0GUT8 65 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 XKRY2A2RUG3 117 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 C1orf196B1AJZ1 125 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 F2Z2F3 143 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 H0Y8G0 127 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 BCE1O60756 84 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 SPINK8P0C7L1 97 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 CRYGAP11844 174 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 LGALS3P17931 250 aaKnown RBP1.25□□□□□ -2.21
SCFD1-219ENST00000556413 MT1HP80294 61 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 ADIRFQ15847 76 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 ALKAL2Q6UX46 152 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 FAM19A1Q7Z5A9 133 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 MRPL52Q86TS9 123 aaKnown RBP1.25□□□□□ -2.21
SCFD1-219ENST00000556413 OR10D4PQ8NGN7 298 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 BORCS7Q96B45 105 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 PACRGQ96M98 296 aaPredicted RBP1.25□□□□□ -2.21
SCFD1-219ENST00000556413 FAM210AQ96ND0 272 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 IMMP2LQ96T52 175 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 SMIM7Q9BQ49 75 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 TCEAL7Q9BRU2 100 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 SMIM2Q9BVW6 85 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 CNFNQ9BYD5 112 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 V9GYV3 84 aa1.25□□□□□ -2.21
SCFD1-219ENST00000556413 IGKV2D-26A0A0A0MRZ7 120 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 C9orf92A6NGG3 77 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 UMAD1C9J7I0 102 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 C9JQL5 133 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 NCR3O14931 201 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 PDE6DO43924 150 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 RAB5AP20339 215 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 CKS2P33552 79 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 PFN2P35080 140 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 RPL28P46779 137 aaKnown RBP1.24□□□□□ -2.21
SCFD1-219ENST00000556413 CKS1BP61024 79 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 RAB14P61106 215 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 TPRXLQ17RH7 258 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 KRTAP19-2Q3LHN2 52 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 PCOTHQ58A44 107 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 FAM104BQ5XKR9 115 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 HRCT1Q6UXD1 115 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 C1orf64Q8NEQ6 169 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 TSKUQ8WUA8 353 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 ZNF625Q96I27 306 aaPredicted RBP1.24□□□□□ -2.21
SCFD1-219ENST00000556413 HIGD2AQ9BW72 106 aa1.24□□□□□ -2.21
SCFD1-219ENST00000556413 TMEM191AQ9H0A3 160 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms