RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 C11orf86A6NJI1 115 aa8.94□□□□□ -0.98
CLSTN3-216ENST00000545663 NDUFA1O15239 70 aa8.94□□□□□ -0.98
CLSTN3-216ENST00000545663 ZNF22P17026 224 aaPredicted RBP8.94□□□□□ -0.98
CLSTN3-216ENST00000545663 RPL18AQ02543 176 aaKnown RBP8.94□□□□□ -0.98
CLSTN3-216ENST00000545663 C6orf226Q5I0X4 101 aa8.94□□□□□ -0.98
CLSTN3-216ENST00000545663 CAMK2N2Q96S95 79 aa8.94□□□□□ -0.98
CLSTN3-216ENST00000545663 C5orf52A6NGY3 159 aa8.93□□□□□ -0.98
CLSTN3-216ENST00000545663 CKS1BP61024 79 aa8.93□□□□□ -0.98
CLSTN3-216ENST00000545663 HERVK_113P61574 105 aa8.93□□□□□ -0.98
CLSTN3-216ENST00000545663 SNRPEP62304 92 aaKnown RBP8.93□□□□□ -0.98
CLSTN3-216ENST00000545663 RNF151Q2KHN1 245 aa8.93□□□□□ -0.98
CLSTN3-216ENST00000545663 SMIM1B2RUZ4 78 aa8.92□□□□□ -0.98
CLSTN3-216ENST00000545663 IGKCP01834 107 aa8.92□□□□□ -0.98
CLSTN3-216ENST00000545663 KRTDAPP60985 99 aa8.92□□□□□ -0.98
CLSTN3-216ENST00000545663 LINC01545Q5VT33 79 aa8.92□□□□□ -0.98
CLSTN3-216ENST00000545663 HIST1H2BLQ99880 126 aa8.92□□□□□ -0.98
CLSTN3-216ENST00000545663 IGLV5-39A0A0G2JS06 123 aa8.91□□□□□ -0.98
CLSTN3-216ENST00000545663 C3orf79P0CE67 100 aa8.91□□□□□ -0.98
CLSTN3-216ENST00000545663 TOMM7Q9P0U1 55 aa8.91□□□□□ -0.98
CLSTN3-216ENST00000545663 TRBV30A0A0K0K1B3 111 aa8.9□□□□□ -0.98
CLSTN3-216ENST00000545663 SPINK8P0C7L1 97 aa8.9□□□□□ -0.98
CLSTN3-216ENST00000545663 KIAA0087Q14695 138 aa8.9□□□□□ -0.98
CLSTN3-216ENST00000545663 TYMSOSQ8TAI1 123 aa8.9□□□□□ -0.98
CLSTN3-216ENST00000545663 COX7B2Q8TF08 81 aa8.9□□□□□ -0.98
CLSTN3-216ENST00000545663 TMEM223A0PJW6 202 aa8.89□□□□□ -0.99
CLSTN3-216ENST00000545663 MT1HP80294 61 aa8.88□□□□□ -0.99
CLSTN3-216ENST00000545663 ASB16-AS1Q495Z4 193 aa8.88□□□□□ -0.99
CLSTN3-216ENST00000545663 LORP23490 312 aaPredicted RBP8.87□□□□□ -0.99
CLSTN3-216ENST00000545663 FAM19A5Q7Z5A7 132 aaPredicted RBP8.87□□□□□ -0.99
CLSTN3-216ENST00000545663 KRTAP7-1Q8IUC3 87 aa8.87□□□□□ -0.99
CLSTN3-216ENST00000545663 PLEKHB2Q96CS7 222 aa8.87□□□□□ -0.99
CLSTN3-216ENST00000545663 PPDPFQ9H3Y8 114 aa8.87□□□□□ -0.99
CLSTN3-216ENST00000545663 LINC00587B1AMM8 73 aa8.85□□□□□ -0.99
CLSTN3-216ENST00000545663 PMCHL2Q9BQD1 86 aa8.85□□□□□ -0.99
CLSTN3-216ENST00000545663 ANAPC11Q9NYG5 84 aa8.85□□□□□ -0.99
CLSTN3-216ENST00000545663 SSPOA2VEC9 5147 aa8.84□□□□□ -0.99
CLSTN3-216ENST00000545663 LEPROTO15243 131 aa8.84□□□□□ -0.99
CLSTN3-216ENST00000545663 TLX1NBP0CAT3 122 aa8.84□□□□□ -0.99
CLSTN3-216ENST00000545663 NMUP48645 174 aa8.84□□□□□ -0.99
CLSTN3-216ENST00000545663 HERV-K104P63124 156 aa8.84□□□□□ -0.99
CLSTN3-216ENST00000545663 UNQ6190/PRO20217Q6UXQ8 127 aa8.84□□□□□ -0.99
CLSTN3-216ENST00000545663 E9PLD3 99 aa8.83□□□□□ -1
CLSTN3-216ENST00000545663 ZNF861PO60384 105 aa8.83□□□□□ -1
CLSTN3-216ENST00000545663 KRTAP10-6P60371 365 aaPredicted RBP8.83□□□□□ -1
CLSTN3-216ENST00000545663 UBE2BP63146 152 aa8.83□□□□□ -1
CLSTN3-216ENST00000545663 TMA7Q9Y2S6 64 aaKnown RBP8.83□□□□□ -1
CLSTN3-216ENST00000545663 MYMXA0A1B0GTQ4 84 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 HSBP1L1C9JCN9 74 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 COX17Q14061 63 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 KRTAP19-2Q3LHN2 52 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 KRTAP13-2Q52LG2 175 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 C2orf82Q6UX34 121 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 C6orf48Q9UBA6 75 aa8.82□□□□□ -1
CLSTN3-216ENST00000545663 NDUFC2-KCTD14E9PQ53 114 aa8.81□□□□□ -1
CLSTN3-216ENST00000545663 J3QQQ9 107 aa8.81□□□□□ -1
CLSTN3-216ENST00000545663 CFC1BP0CG36 223 aa8.81□□□□□ -1
CLSTN3-216ENST00000545663 LGALS3P17931 250 aaKnown RBP8.81□□□□□ -1
CLSTN3-216ENST00000545663 C10orf25Q5T742 122 aa8.8□□□□□ -1
CLSTN3-216ENST00000545663 NDUFA12Q9UI09 145 aa8.8□□□□□ -1
CLSTN3-216ENST00000545663 M0QXV9 152 aa8.79□□□□□ -1
CLSTN3-216ENST00000545663 SCGB1D1O95968 90 aa8.79□□□□□ -1
CLSTN3-216ENST00000545663 LINC00304Q8N9R0 145 aa8.79□□□□□ -1
CLSTN3-216ENST00000545663 ZNF625Q96I27 306 aaPredicted RBP8.79□□□□□ -1
CLSTN3-216ENST00000545663 USH2AO75445 5202 aa8.78□□□□□ -1
CLSTN3-216ENST00000545663 LINC00337Q8N6G1 96 aa8.77□□□□□ -1.01
CLSTN3-216ENST00000545663 ERG28Q9UKR5 140 aa8.77□□□□□ -1.01
CLSTN3-216ENST00000545663 JOSD1Q15040 202 aaPredicted RBP8.75□□□□□ -1.01
CLSTN3-216ENST00000545663 GAGE2EQ4V326 116 aa8.75□□□□□ -1.01
CLSTN3-216ENST00000545663 MEIG1Q5JSS6 88 aa8.75□□□□□ -1.01
CLSTN3-216ENST00000545663 GAGE2DQ9UEU5 116 aa8.75□□□□□ -1.01
CLSTN3-216ENST00000545663 SEC61BP60468 96 aaKnown RBP8.74□□□□□ -1.01
CLSTN3-216ENST00000545663 KRTAP13-3Q3SY46 172 aa8.74□□□□□ -1.01
CLSTN3-216ENST00000545663 FCGBPQ9Y6R7 5405 aaPredicted RBP8.74□□□□□ -1.01
CLSTN3-216ENST00000545663 SYNE2Q8WXH0 6885 aaKnown RBP8.73□□□□□ -1.01
CLSTN3-216ENST00000545663 LINC00158P58513 81 aa8.73□□□□□ -1.01
CLSTN3-216ENST00000545663 ATOH7Q8N100 152 aa8.73□□□□□ -1.01
CLSTN3-216ENST00000545663 PFN2P35080 140 aa8.72□□□□□ -1.01
CLSTN3-216ENST00000545663 TSPEAR-AS2P59090 65 aa8.72□□□□□ -1.01
CLSTN3-216ENST00000545663 ZNF815PA8K554 130 aa8.71□□□□□ -1.02
CLSTN3-216ENST00000545663 TIMM17BO60830 172 aa8.7□□□□□ -1.02
CLSTN3-216ENST00000545663 COPS9Q8WXC6 57 aa8.7□□□□□ -1.02
CLSTN3-216ENST00000545663 RPL24P83731 157 aaKnown RBP8.69□□□□□ -1.02
CLSTN3-216ENST00000545663 ANKRD39Q53RE8 183 aa8.69□□□□□ -1.02
CLSTN3-216ENST00000545663 IGKV2D-26A0A0A0MRZ7 120 aa8.68□□□□□ -1.02
CLSTN3-216ENST00000545663 A0A0J9YXY3 114 aa8.68□□□□□ -1.02
CLSTN3-216ENST00000545663 SMIM13P0DJ93 91 aa8.68□□□□□ -1.02
CLSTN3-216ENST00000545663 SCGB1D4Q6XE38 83 aa8.68□□□□□ -1.02
CLSTN3-216ENST00000545663 MIEN1Q9BRT3 115 aa8.68□□□□□ -1.02
CLSTN3-216ENST00000545663 VAMP8Q9BV40 100 aa8.68□□□□□ -1.02
CLSTN3-216ENST00000545663 TMEM238C9JI98 176 aa8.67□□□□□ -1.02
CLSTN3-216ENST00000545663 LBHQ53QV2 105 aaPredicted RBP8.67□□□□□ -1.02
CLSTN3-216ENST00000545663 C9orf129Q5T035 196 aaKnown RBP8.67□□□□□ -1.02
CLSTN3-216ENST00000545663 Q6ZVH6 145 aa8.67□□□□□ -1.02
CLSTN3-216ENST00000545663 SND1-IT1Q9HBX3 110 aa8.67□□□□□ -1.02
CLSTN3-216ENST00000545663 XAGE1AQ9HD64 81 aa8.67□□□□□ -1.02
CLSTN3-216ENST00000545663 MIR7-3HGQ8N6C7 128 aa8.66□□□□□ -1.02
CLSTN3-216ENST00000545663 TP73-AS1Q9UF72 201 aa8.66□□□□□ -1.02
CLSTN3-216ENST00000545663 S100A12P80511 92 aa8.65□□□□□ -1.02
CLSTN3-216ENST00000545663 LOC107984156A0A0G2JMH3 177 aa8.64□□□□□ -1.03
CLSTN3-216ENST00000545663 DLEU1O43261 78 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms