RNA–Protein interactions for RNA: ENST00000542354.1

TRAV1-1-201, Transcript of T cell receptor alpha variable 1-1, humanhuman

APPRIS P1 BASIC

Gene TRAV1-1, Length 392 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1-201ENST00000542354 S100A16Q96FQ6 103 aaKnown RBP0.61□□□□□ -2.31
TRAV1-1-201ENST00000542354 MRPS26Q9BYN8 205 aaKnown RBP0.61□□□□□ -2.31
TRAV1-1-201ENST00000542354 MTFP1Q9UDX5 166 aa0.61□□□□□ -2.31
TRAV1-1-201ENST00000542354 TRGC1P0CF51 173 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 FCER1GP30273 86 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 LINC00313P59037 77 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 KRTAP12-3P60328 96 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 FABP5Q01469 135 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 SCGB2B2Q4G0G5 96 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 Q6ZRX8 168 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 RPL39LQ96EH5 51 aaKnown RBP0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 TPPP3Q9BW30 176 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 FAM107BQ9H098 131 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 RNASE7Q9H1E1 156 aaKnown RBP0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 SND1-IT1Q9HBX3 110 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 GSKIPQ9P0R6 139 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 EPDR1Q9UM22 224 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 ZFP30Q9Y2G7 519 aa0.6□□□□□ -2.31
TRAV1-1-201ENST00000542354 LOC100130705A0A1B0GUX0 176 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 SMIM30A4D0T7 59 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 LST1O00453 97 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 PPP1R2P9O14990 202 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 SSSCA1O60232 199 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 HPGDSO60760 199 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 P0C880 135 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 KRTAP19-5Q3LI72 72 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 LINC00299Q6ZSB3 139 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 OR5H6Q8NGV6 325 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 CNBD2Q96M20 576 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 AMELXQ99217 191 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 VCX3BQ9H321 246 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 ST20Q9HBF5 79 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 VCX3AQ9NNX9 186 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 NDUFB11Q9NX14 153 aa0.59□□□□□ -2.31
TRAV1-1-201ENST00000542354 TRBV6-5A0A0K0K1A5 114 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 UBE2L5PA0A1B0GUS4 154 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 TCRBV3S1A0A5B6 114 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 F8WEM9 126 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 PFN2P35080 140 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 MRPS36P82909 103 aaKnown RBP0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 TAL2Q16559 108 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 CEND1Q8N111 149 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 FMC1Q96HJ9 113 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 NKX6-2Q9C056 277 aaPredicted RBP0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 BLOC1S6Q9UL45 172 aa0.58□□□□□ -2.32
TRAV1-1-201ENST00000542354 TRBV27A0A0K0K1C4 114 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 ANKRD20A5PA0PJZ0 165 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 D6R8Y8 96 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 F2Z2F3 143 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 ATP5LO75964 103 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 CD3DP04234 171 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 S100A11P31949 105 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 POLR2KP53803 58 aaKnown RBP0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 SCGB3A2Q96PL1 93 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 NPCDR1Q9BY65 106 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 SPANXA1Q9NS26 97 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 KCNIP2Q9NS61 270 aa0.57□□□□□ -2.32
TRAV1-1-201ENST00000542354 TRBV7-7A0A0K0K1E9 115 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 TRBV10-3A0A0K0K1G6 114 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 TEX49A0A1B0GTD5 131 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 SMIM31A0A1B0GVY4 71 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 ZNF815PA8K554 130 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 COLCA2A8K830 154 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 RAB3DO95716 219 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 C3orf79P0CE67 100 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 RPL35P42766 123 aaKnown RBP0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 BCAP31P51572 246 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 HBG1P69891 147 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 HBG2P69892 147 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 COX17Q14061 63 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 ATP6V1FQ16864 119 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 C22orf42Q6IC83 251 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 ZFP1Q6P2D0 407 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 SMIM15Q7Z3B0 74 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 DEFB105AQ8NG35 78 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 COX7B2Q8TF08 81 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 DSCR8Q96T75 97 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 TMEM191AQ9H0A3 160 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 MCUBQ9NWR8 336 aa0.56□□□□□ -2.32
TRAV1-1-201ENST00000542354 TRDV1A0A1B0GX56 115 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 A0A1W2PPV4 95 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 C7orf66A4D0T2 115 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 DISC1C4P0D8 188 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 C17orf112F2Z3M2 114 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 ATP6V1G1O75348 118 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 HINT1P49773 126 aaPredicted RBP0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 VBP1P61758 197 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 UBE2G1P62253 170 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 MLLT11Q13015 90 aaPredicted RBP0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 KRTAP6-1Q3LI64 71 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 C2orf88Q9BSF0 95 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 BATF3Q9NR55 127 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 TNFSF18Q9UNG2 199 aa0.55□□□□□ -2.32
TRAV1-1-201ENST00000542354 PEX7O00628 323 aa0.54□□□□□ -2.32
TRAV1-1-201ENST00000542354 NCR3O14931 201 aa0.54□□□□□ -2.32
TRAV1-1-201ENST00000542354 PPBPP02775 128 aa0.54□□□□□ -2.32
TRAV1-1-201ENST00000542354 GNAO1P09471 354 aa0.54□□□□□ -2.32
TRAV1-1-201ENST00000542354 IGLC6P0CF74 106 aa0.54□□□□□ -2.32
TRAV1-1-201ENST00000542354 RPL39P62891 51 aaKnown RBP0.54□□□□□ -2.32
TRAV1-1-201ENST00000542354 SEC11AP67812 179 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms