RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 PRR3P79522 188 aaKnown RBP11.69□□□□□ -0.54
VPS33A-205ENST00000541169 MRPL55Q7Z7F7 128 aaKnown RBP11.69□□□□□ -0.54
VPS33A-205ENST00000541169 KRTAP7-1Q8IUC3 87 aa11.69□□□□□ -0.54
VPS33A-205ENST00000541169 KRTAP4-5Q9BYR2 181 aa11.69□□□□□ -0.54
VPS33A-205ENST00000541169 TIMM17BO60830 172 aa11.68□□□□□ -0.54
VPS33A-205ENST00000541169 SERTAD4-AS1Q5TG53 156 aa11.68□□□□□ -0.54
VPS33A-205ENST00000541169 MIR7-3HGQ8N6C7 128 aa11.68□□□□□ -0.54
VPS33A-205ENST00000541169 LOC107984156A0A0G2JMH3 177 aa11.67□□□□□ -0.54
VPS33A-205ENST00000541169 A0A0J9YXY3 114 aa11.67□□□□□ -0.54
VPS33A-205ENST00000541169 ZNF815PA8K554 130 aa11.67□□□□□ -0.54
VPS33A-205ENST00000541169 ARL17AQ8IVW1 177 aa11.67□□□□□ -0.54
VPS33A-205ENST00000541169 A0A0U1RRA0 63 aa11.66□□□□□ -0.54
VPS33A-205ENST00000541169 SCGB1D1O95968 90 aa11.66□□□□□ -0.54
VPS33A-205ENST00000541169 ATOH7Q8N100 152 aa11.66□□□□□ -0.54
VPS33A-205ENST00000541169 MIEN1Q9BRT3 115 aa11.66□□□□□ -0.54
VPS33A-205ENST00000541169 IGKV2D-26A0A0A0MRZ7 120 aa11.65□□□□□ -0.54
VPS33A-205ENST00000541169 VPREB1P12018 145 aa11.64□□□□□ -0.55
VPS33A-205ENST00000541169 PSORS1C2Q9UIG4 136 aa11.64□□□□□ -0.55
VPS33A-205ENST00000541169 SRRM2Q9UQ35 2752 aaKnown RBP11.63□□□□□ -0.55
VPS33A-205ENST00000541169 COPS9Q8WXC6 57 aa11.63□□□□□ -0.55
VPS33A-205ENST00000541169 ANKRD39Q53RE8 183 aa11.62□□□□□ -0.55
VPS33A-205ENST00000541169 BOD1L2Q8IYS8 172 aa11.62□□□□□ -0.55
VPS33A-205ENST00000541169 SCGB1D4Q6XE38 83 aa11.61□□□□□ -0.55
VPS33A-205ENST00000541169 LINC00167Q96N53 147 aa11.61□□□□□ -0.55
VPS33A-205ENST00000541169 TMEM238C9JI98 176 aa11.6□□□□□ -0.55
VPS33A-205ENST00000541169 M0R378 163 aa11.6□□□□□ -0.55
VPS33A-205ENST00000541169 C1orf137Q5JT78 98 aa11.6□□□□□ -0.55
VPS33A-205ENST00000541169 SPINK6Q6UWN8 80 aa11.6□□□□□ -0.55
VPS33A-205ENST00000541169 NDUFC2O95298 119 aa11.59□□□□□ -0.55
VPS33A-205ENST00000541169 Q6ZVH6 145 aa11.59□□□□□ -0.55
VPS33A-205ENST00000541169 TMA7Q9Y2S6 64 aaKnown RBP11.58□□□□□ -0.56
VPS33A-205ENST00000541169 TRBV10-2A0A0K0K1G8 114 aa11.57□□□□□ -0.56
VPS33A-205ENST00000541169 S100A12P80511 92 aa11.57□□□□□ -0.56
VPS33A-205ENST00000541169 JOSD1Q15040 202 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-205ENST00000541169 DAND5Q8N907 189 aa11.57□□□□□ -0.56
VPS33A-205ENST00000541169 PPDPFQ9H3Y8 114 aa11.57□□□□□ -0.56
VPS33A-205ENST00000541169 IGLV1-50A0A075B6I6 118 aa11.56□□□□□ -0.56
VPS33A-205ENST00000541169 IGLV7-43P04211 117 aa11.56□□□□□ -0.56
VPS33A-205ENST00000541169 ADAMTSL4-AS1Q5T5F5 129 aa11.56□□□□□ -0.56
VPS33A-205ENST00000541169 LITAFQ99732 161 aa11.56□□□□□ -0.56
VPS33A-205ENST00000541169 RPL37AP8A6NKH3 93 aa11.55□□□□□ -0.56
VPS33A-205ENST00000541169 SRSF9Q13242 221 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS33A-205ENST00000541169 TTTY13Q9BZ97 58 aa11.55□□□□□ -0.56
VPS33A-205ENST00000541169 SPANXB1Q9NS25 103 aaPredicted RBP11.55□□□□□ -0.56
VPS33A-205ENST00000541169 GAGE10A6NGK3 116 aa11.54□□□□□ -0.56
VPS33A-205ENST00000541169 IFITM1P13164 125 aa11.54□□□□□ -0.56
VPS33A-205ENST00000541169 PCP2Q8IVA1 136 aa11.54□□□□□ -0.56
VPS33A-205ENST00000541169 SPANXDQ9BXN6 97 aa11.54□□□□□ -0.56
VPS33A-205ENST00000541169 SPANXCQ9NY87 97 aa11.54□□□□□ -0.56
VPS33A-205ENST00000541169 CBY1Q9Y3M2 126 aa11.54□□□□□ -0.56
VPS33A-205ENST00000541169 BCE1O60756 84 aa11.53□□□□□ -0.56
VPS33A-205ENST00000541169 KRTAP11-1Q8IUC1 163 aa11.53□□□□□ -0.56
VPS33A-205ENST00000541169 LINC00308Q8TCZ7 52 aa11.53□□□□□ -0.56
VPS33A-205ENST00000541169 OXTP01178 125 aa11.52□□□□□ -0.57
VPS33A-205ENST00000541169 Q8NDZ9 215 aa11.52□□□□□ -0.57
VPS33A-205ENST00000541169 DIRC1Q969H9 104 aa11.52□□□□□ -0.57
VPS33A-205ENST00000541169 FAT1Q14517 4588 aa11.52□□□□□ -0.57
VPS33A-205ENST00000541169 IGKV2-28A0A075B6P5 120 aa11.51□□□□□ -0.57
VPS33A-205ENST00000541169 IGKV2D-28P01615 120 aa11.51□□□□□ -0.57
VPS33A-205ENST00000541169 RPL28P46779 137 aaKnown RBP11.51□□□□□ -0.57
VPS33A-205ENST00000541169 REG3GQ6UW15 175 aa11.51□□□□□ -0.57
VPS33A-205ENST00000541169 VAMP8Q9BV40 100 aa11.51□□□□□ -0.57
VPS33A-205ENST00000541169 DLEU1O43261 78 aa11.5□□□□□ -0.57
VPS33A-205ENST00000541169 HNRNPA3P51991 378 aaKnown RBP11.5□□□□□ -0.57
VPS33A-205ENST00000541169 LINC00518Q8N0U6 118 aa11.5□□□□□ -0.57
VPS33A-205ENST00000541169 NCR3O14931 201 aa11.49□□□□□ -0.57
VPS33A-205ENST00000541169 ZNF861PO60384 105 aa11.49□□□□□ -0.57
VPS33A-205ENST00000541169 COX8AP10176 69 aa11.49□□□□□ -0.57
VPS33A-205ENST00000541169 KRTAP29-1A8MX34 341 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-205ENST00000541169 PRYO14603 147 aa11.48□□□□□ -0.57
VPS33A-205ENST00000541169 SOSTDC1Q6X4U4 206 aa11.48□□□□□ -0.57
VPS33A-205ENST00000541169 TMEM126AQ9H061 195 aa11.48□□□□□ -0.57
VPS33A-205ENST00000541169 KCNQ1DNQ9H478 68 aa11.48□□□□□ -0.57
VPS33A-205ENST00000541169 VPS13BQ7Z7G8 4022 aa11.47□□□□□ -0.57
VPS33A-205ENST00000541169 S100A7L2Q5SY68 101 aa11.47□□□□□ -0.57
VPS33A-205ENST00000541169 DDTP30046 118 aa11.46□□□□□ -0.57
VPS33A-205ENST00000541169 NPC2P61916 151 aa11.46□□□□□ -0.57
VPS33A-205ENST00000541169 UBE2AP49459 152 aa11.45□□□□□ -0.58
VPS33A-205ENST00000541169 SPATA45Q537H7 98 aa11.45□□□□□ -0.58
VPS33A-205ENST00000541169 PAM16Q9Y3D7 125 aa11.45□□□□□ -0.58
VPS33A-205ENST00000541169 TRBV10-3A0A0K0K1G6 114 aa11.44□□□□□ -0.58
VPS33A-205ENST00000541169 H0Y9J4 135 aa11.44□□□□□ -0.58
VPS33A-205ENST00000541169 IGLV6-57P01721 117 aa11.44□□□□□ -0.58
VPS33A-205ENST00000541169 PYY3Q5JQD4 70 aa11.43□□□□□ -0.58
VPS33A-205ENST00000541169 LINC00337Q8N6G1 96 aa11.43□□□□□ -0.58
VPS33A-205ENST00000541169 EIF4EBP3O60516 100 aaPredicted RBP11.42□□□□□ -0.58
VPS33A-205ENST00000541169 FLG2Q5D862 2391 aaPredicted RBP11.42□□□□□ -0.58
VPS33A-205ENST00000541169 PCLOQ9Y6V0 5065 aa11.42□□□□□ -0.58
VPS33A-205ENST00000541169 SPRR1AP35321 89 aa11.41□□□□□ -0.58
VPS33A-205ENST00000541169 SLC25A34Q6PIV7 304 aa11.41□□□□□ -0.58
VPS33A-205ENST00000541169 FAM19A1Q7Z5A9 133 aa11.41□□□□□ -0.58
VPS33A-205ENST00000541169 J3QL48 77 aa11.4□□□□□ -0.58
VPS33A-205ENST00000541169 KRTAP13-1Q8IUC0 172 aa11.4□□□□□ -0.58
VPS33A-205ENST00000541169 MUSTN1Q8IVN3 82 aa11.4□□□□□ -0.58
VPS33A-205ENST00000541169 HIGD1BQ9P298 99 aa11.4□□□□□ -0.58
VPS33A-205ENST00000541169 ABCA13Q86UQ4 5058 aa11.39□□□□□ -0.59
VPS33A-205ENST00000541169 LINC01600Q96MT4 127 aa11.39□□□□□ -0.59
VPS33A-205ENST00000541169 ETDCA0A1B0GVM5 59 aa11.38□□□□□ -0.59
VPS33A-205ENST00000541169 HINT1P49773 126 aaPredicted RBP11.38□□□□□ -0.59
VPS33A-205ENST00000541169 OR13C6PQ8NH95 151 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 264.7 ms