RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 A0A087WYN8 130 aa9.66□□□□□ -0.86
COLCA1-204ENST00000540738 SPTSSBQ8NFR3 76 aa9.66□□□□□ -0.86
COLCA1-204ENST00000540738 RPL37AP61513 92 aaKnown RBP9.65□□□□□ -0.86
COLCA1-204ENST00000540738 B5MCH6 92 aa9.65□□□□□ -0.86
COLCA1-204ENST00000540738 FAM236DA0A1B0GTK5 79 aa9.64□□□□□ -0.87
COLCA1-204ENST00000540738 FAM236CP0DP71 79 aa9.64□□□□□ -0.87
COLCA1-204ENST00000540738 MAST4O15021 2626 aa9.64□□□□□ -0.87
COLCA1-204ENST00000540738 PHF5AQ7RTV0 110 aaKnown RBP9.64□□□□□ -0.87
COLCA1-204ENST00000540738 Q6ZVQ6 151 aa9.63□□□□□ -0.87
COLCA1-204ENST00000540738 ATRQ13535 2644 aa9.63□□□□□ -0.87
COLCA1-204ENST00000540738 DNAH12Q6ZR08 3092 aa9.63□□□□□ -0.87
COLCA1-204ENST00000540738 TRBV7-6A0A0J9YX20 115 aa9.63□□□□□ -0.87
COLCA1-204ENST00000540738 Q8N3U1 123 aa9.63□□□□□ -0.87
COLCA1-204ENST00000540738 Q9UF83 564 aa9.63□□□□□ -0.87
COLCA1-204ENST00000540738 TYMSOSQ8TAI1 123 aa9.62□□□□□ -0.87
COLCA1-204ENST00000540738 C20orf197Q8N268 126 aa9.62□□□□□ -0.87
COLCA1-204ENST00000540738 C3orf22Q8N5N4 141 aa9.62□□□□□ -0.87
COLCA1-204ENST00000540738 MOBPQ13875 183 aa9.61□□□□□ -0.87
COLCA1-204ENST00000540738 IMUPQ9GZP8 106 aa9.61□□□□□ -0.87
COLCA1-204ENST00000540738 LINC00612Q8N6U2 182 aa9.6□□□□□ -0.87
COLCA1-204ENST00000540738 CEP350Q5VT06 3117 aa9.6□□□□□ -0.87
COLCA1-204ENST00000540738 SPACA4Q8TDM5 124 aa9.6□□□□□ -0.87
COLCA1-204ENST00000540738 K7ERS5 55 aa9.6□□□□□ -0.87
COLCA1-204ENST00000540738 BCE1O60756 84 aa9.59□□□□□ -0.87
COLCA1-204ENST00000540738 GIG44P09565 113 aaPredicted RBP9.59□□□□□ -0.87
COLCA1-204ENST00000540738 Q8NBF4 154 aa9.58□□□□□ -0.88
COLCA1-204ENST00000540738 APLNQ9ULZ1 77 aa9.57□□□□□ -0.88
COLCA1-204ENST00000540738 A0A087WTM6 91 aa9.57□□□□□ -0.88
COLCA1-204ENST00000540738 PRR15LQ9BU68 103 aa9.57□□□□□ -0.88
COLCA1-204ENST00000540738 SERP1Q9Y6X1 66 aa9.57□□□□□ -0.88
COLCA1-204ENST00000540738 NDUFC1O43677 76 aa9.56□□□□□ -0.88
COLCA1-204ENST00000540738 EPM2AB3EWF7 344 aa9.56□□□□□ -0.88
COLCA1-204ENST00000540738 CHD7Q9P2D1 2997 aa9.56□□□□□ -0.88
COLCA1-204ENST00000540738 CHTF8P0CG12 524 aa9.56□□□□□ -0.88
COLCA1-204ENST00000540738 ZNF292O60281 2723 aa9.56□□□□□ -0.88
COLCA1-204ENST00000540738 FAM240AA0A1B0GVK7 77 aa9.55□□□□□ -0.88
COLCA1-204ENST00000540738 Q6ZRX8 168 aa9.55□□□□□ -0.88
COLCA1-204ENST00000540738 UQCRQO14949 82 aa9.55□□□□□ -0.88
COLCA1-204ENST00000540738 KIAA0087Q14695 138 aa9.55□□□□□ -0.88
COLCA1-204ENST00000540738 UTRNP46939 3433 aa9.55□□□□□ -0.88
COLCA1-204ENST00000540738 PRR34Q9NV39 138 aa9.54□□□□□ -0.88
COLCA1-204ENST00000540738 ELOF1P60002 83 aaKnown RBP9.53□□□□□ -0.88
COLCA1-204ENST00000540738 LINC01547P58512 204 aaPredicted RBP9.53□□□□□ -0.88
COLCA1-204ENST00000540738 MT-ATP8P03928 68 aa9.52□□□□□ -0.89
COLCA1-204ENST00000540738 CHD9Q3L8U1 2897 aa9.52□□□□□ -0.89
COLCA1-204ENST00000540738 SVIPQ8NHG7 77 aa9.52□□□□□ -0.89
COLCA1-204ENST00000540738 WIPF1O43516 503 aa9.51□□□□□ -0.89
COLCA1-204ENST00000540738 FAM30AQ9NZY2 134 aa9.51□□□□□ -0.89
COLCA1-204ENST00000540738 A0A1B0GW54 56 aa9.51□□□□□ -0.89
COLCA1-204ENST00000540738 V9GYY9 64 aa9.51□□□□□ -0.89
COLCA1-204ENST00000540738 ATP5EP56381 51 aaPredicted RBP9.5□□□□□ -0.89
COLCA1-204ENST00000540738 SERP2Q8N6R1 65 aa9.5□□□□□ -0.89
COLCA1-204ENST00000540738 C9orf163Q8N9P6 203 aa9.48□□□□□ -0.89
COLCA1-204ENST00000540738 LINC00476Q8WZB0 136 aa9.48□□□□□ -0.89
COLCA1-204ENST00000540738 LINC00208Q96KT6 92 aa9.47□□□□□ -0.89
COLCA1-204ENST00000540738 RETNLBQ9BQ08 111 aa9.47□□□□□ -0.89
COLCA1-204ENST00000540738 DEFB116Q30KQ4 102 aa9.46□□□□□ -0.9
COLCA1-204ENST00000540738 VPREB1P12018 145 aa9.45□□□□□ -0.9
COLCA1-204ENST00000540738 CENPEQ02224 2701 aa9.45□□□□□ -0.9
COLCA1-204ENST00000540738 ZNF575Q86XF7 245 aa9.45□□□□□ -0.9
COLCA1-204ENST00000540738 HCG22E2RYF7 251 aa9.45□□□□□ -0.9
COLCA1-204ENST00000540738 PRR4Q16378 134 aa9.44□□□□□ -0.9
COLCA1-204ENST00000540738 SPAG11AQ6PDA7 123 aa9.44□□□□□ -0.9
COLCA1-204ENST00000540738 BAHCC1Q9P281 2608 aa9.43□□□□□ -0.9
COLCA1-204ENST00000540738 CASC10Q5T4H9 136 aa9.42□□□□□ -0.9
COLCA1-204ENST00000540738 SOSTDC1Q6X4U4 206 aa9.42□□□□□ -0.9
COLCA1-204ENST00000540738 C15orf56Q8N910 161 aa9.42□□□□□ -0.9
COLCA1-204ENST00000540738 TRAV7A0A075B6U4 112 aa9.42□□□□□ -0.9
COLCA1-204ENST00000540738 IGLV1-50A0A075B6I6 118 aa9.4□□□□□ -0.9
COLCA1-204ENST00000540738 ZNF861PO60384 105 aa9.4□□□□□ -0.9
COLCA1-204ENST00000540738 SNURFQ9Y675 71 aa9.4□□□□□ -0.9
COLCA1-204ENST00000540738 SETXQ7Z333 2677 aaKnown RBP9.4□□□□□ -0.9
COLCA1-204ENST00000540738 TLX1NBP0CAT3 122 aa9.4□□□□□ -0.91
COLCA1-204ENST00000540738 FAM168BA1KXE4 195 aa9.39□□□□□ -0.91
COLCA1-204ENST00000540738 SMR3BP02814 79 aaPredicted RBP9.39□□□□□ -0.91
COLCA1-204ENST00000540738 H0Y9P7 68 aa9.39□□□□□ -0.91
COLCA1-204ENST00000540738 CNBPP62633 177 aaKnown RBP9.39□□□□□ -0.91
COLCA1-204ENST00000540738 TP53AIP1Q9HCN2 124 aa9.39□□□□□ -0.91
COLCA1-204ENST00000540738 IGKV2D-30A0A075B6S6 120 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 IGLV6-57P01721 117 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 IGKV2-30P06310 120 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 SERTAD4-AS1Q5TG53 156 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 KCNQ1DNQ9H478 68 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 CXCL6P80162 114 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 ATP11AUNQ6ZP68 121 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 SSBP3-AS1Q7Z2R9 100 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 LINC00304Q8N9R0 145 aa9.38□□□□□ -0.91
COLCA1-204ENST00000540738 LINC00313P59037 77 aa9.37□□□□□ -0.91
COLCA1-204ENST00000540738 TEP1Q99973 2627 aaKnown RBP9.37□□□□□ -0.91
COLCA1-204ENST00000540738 ST20-AS1Q8NBB2 130 aa9.37□□□□□ -0.91
COLCA1-204ENST00000540738 TRANK1O15050 2925 aa9.36□□□□□ -0.91
COLCA1-204ENST00000540738 COX7CP15954 63 aa9.36□□□□□ -0.91
COLCA1-204ENST00000540738 Q6Q795 121 aa9.36□□□□□ -0.91
COLCA1-204ENST00000540738 HTTP42858 3142 aa9.36□□□□□ -0.91
COLCA1-204ENST00000540738 hDV103S1A0JD37 113 aa9.35□□□□□ -0.91
COLCA1-204ENST00000540738 PLA2G2DQ9UNK4 145 aa9.35□□□□□ -0.91
COLCA1-204ENST00000540738 LINC00528Q8N1L1 170 aa9.34□□□□□ -0.91
COLCA1-204ENST00000540738 PCOTHQ58A44 107 aa9.33□□□□□ -0.92
COLCA1-204ENST00000540738 CR1P17927 2039 aa9.33□□□□□ -0.92
COLCA1-204ENST00000540738 LINC00846Q9NV44 126 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms