RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 LINC00587B1AMM8 73 aa13.29□□□□□ -0.28
CAPN1-220ENST00000530567 M0QXV9 152 aa13.29□□□□□ -0.28
CAPN1-220ENST00000530567 ZNF815PA8K554 130 aa13.28□□□□□ -0.28
CAPN1-220ENST00000530567 Q8NDZ9 215 aa13.28□□□□□ -0.28
CAPN1-220ENST00000530567 C7orf33Q8WU49 177 aa13.28□□□□□ -0.28
CAPN1-220ENST00000530567 IGLV5-37A0A075B6J1 123 aa13.26□□□□□ -0.29
CAPN1-220ENST00000530567 RPL37AP61513 92 aaKnown RBP13.26□□□□□ -0.29
CAPN1-220ENST00000530567 KRTAP11-1Q8IUC1 163 aa13.26□□□□□ -0.29
CAPN1-220ENST00000530567 PCP2Q8IVA1 136 aa13.26□□□□□ -0.29
CAPN1-220ENST00000530567 C22orf24Q9Y442 160 aa13.26□□□□□ -0.29
CAPN1-220ENST00000530567 JOSD1Q15040 202 aaPredicted RBP13.25□□□□□ -0.29
CAPN1-220ENST00000530567 DAND5Q8N907 189 aa13.25□□□□□ -0.29
CAPN1-220ENST00000530567 PLA2G1BP04054 148 aaKnown RBP13.24□□□□□ -0.29
CAPN1-220ENST00000530567 VPREB1P12018 145 aa13.24□□□□□ -0.29
CAPN1-220ENST00000530567 LITAFQ99732 161 aa13.24□□□□□ -0.29
CAPN1-220ENST00000530567 TP73-AS1Q9UF72 201 aa13.24□□□□□ -0.29
CAPN1-220ENST00000530567 SRRM2Q9UQ35 2752 aaKnown RBP13.24□□□□□ -0.29
CAPN1-220ENST00000530567 ADAMTSL4-AS1Q5T5F5 129 aa13.23□□□□□ -0.29
CAPN1-220ENST00000530567 HSBP1L1C9JCN9 74 aa13.22□□□□□ -0.29
CAPN1-220ENST00000530567 ABCA13Q86UQ4 5058 aa13.22□□□□□ -0.29
CAPN1-220ENST00000530567 TIMM17BO60830 172 aa13.22□□□□□ -0.29
CAPN1-220ENST00000530567 PRR3P79522 188 aaKnown RBP13.22□□□□□ -0.29
CAPN1-220ENST00000530567 MRPL55Q7Z7F7 128 aaKnown RBP13.21□□□□□ -0.3
CAPN1-220ENST00000530567 LOC107984156A0A0G2JMH3 177 aa13.2□□□□□ -0.3
CAPN1-220ENST00000530567 ARL17AQ8IVW1 177 aa13.2□□□□□ -0.3
CAPN1-220ENST00000530567 EIF4EBP3O60516 100 aaPredicted RBP13.19□□□□□ -0.3
CAPN1-220ENST00000530567 SOSTDC1Q6X4U4 206 aa13.19□□□□□ -0.3
CAPN1-220ENST00000530567 PSORS1C2Q9UIG4 136 aa13.19□□□□□ -0.3
CAPN1-220ENST00000530567 RPL24P83731 157 aaKnown RBP13.18□□□□□ -0.3
CAPN1-220ENST00000530567 LBHQ53QV2 105 aaPredicted RBP13.18□□□□□ -0.3
CAPN1-220ENST00000530567 PYY3Q5JQD4 70 aa13.18□□□□□ -0.3
CAPN1-220ENST00000530567 BOD1L2Q8IYS8 172 aa13.18□□□□□ -0.3
CAPN1-220ENST00000530567 NKAPP1Q8N9T2 125 aa13.18□□□□□ -0.3
CAPN1-220ENST00000530567 UBE2BP63146 152 aa13.17□□□□□ -0.3
CAPN1-220ENST00000530567 LINC00167Q96N53 147 aa13.17□□□□□ -0.3
CAPN1-220ENST00000530567 HNRNPA3P51991 378 aaKnown RBP13.16□□□□□ -0.3
CAPN1-220ENST00000530567 GAGE10A6NGK3 116 aa13.15□□□□□ -0.3
CAPN1-220ENST00000530567 SCGB1D4Q6XE38 83 aa13.15□□□□□ -0.3
CAPN1-220ENST00000530567 PKHD1L1Q86WI1 4243 aa13.14□□□□□ -0.31
CAPN1-220ENST00000530567 NPC2P61916 151 aa13.13□□□□□ -0.31
CAPN1-220ENST00000530567 PAM16Q9Y3D7 125 aa13.13□□□□□ -0.31
CAPN1-220ENST00000530567 RPL37AP8A6NKH3 93 aa13.13□□□□□ -0.31
CAPN1-220ENST00000530567 LINC00308Q8TCZ7 52 aa13.13□□□□□ -0.31
CAPN1-220ENST00000530567 MIEN1Q9BRT3 115 aa13.12□□□□□ -0.31
CAPN1-220ENST00000530567 VAMP8Q9BV40 100 aa13.12□□□□□ -0.31
CAPN1-220ENST00000530567 SPANXDQ9BXN6 97 aa13.12□□□□□ -0.31
CAPN1-220ENST00000530567 SPANXCQ9NY87 97 aa13.12□□□□□ -0.31
CAPN1-220ENST00000530567 PCLOQ9Y6V0 5065 aa13.11□□□□□ -0.31
CAPN1-220ENST00000530567 TMEM238C9JI98 176 aa13.11□□□□□ -0.31
CAPN1-220ENST00000530567 COX8AP10176 69 aa13.11□□□□□ -0.31
CAPN1-220ENST00000530567 NCR3O14931 201 aa13.1□□□□□ -0.31
CAPN1-220ENST00000530567 INAFM2P0DMQ5 153 aa13.1□□□□□ -0.31
CAPN1-220ENST00000530567 SPATA45Q537H7 98 aa13.1□□□□□ -0.31
CAPN1-220ENST00000530567 C1orf137Q5JT78 98 aa13.1□□□□□ -0.31
CAPN1-220ENST00000530567 M0R378 163 aa13.09□□□□□ -0.31
CAPN1-220ENST00000530567 NDUFC2O95298 119 aa13.09□□□□□ -0.31
CAPN1-220ENST00000530567 FLG2Q5D862 2391 aaPredicted RBP13.08□□□□□ -0.31
CAPN1-220ENST00000530567 IGLV1-50A0A075B6I6 118 aa13.08□□□□□ -0.32
CAPN1-220ENST00000530567 IGKV2-28A0A075B6P5 120 aa13.08□□□□□ -0.32
CAPN1-220ENST00000530567 IGKV2D-28P01615 120 aa13.08□□□□□ -0.32
CAPN1-220ENST00000530567 DLEU1O43261 78 aa13.06□□□□□ -0.32
CAPN1-220ENST00000530567 IGLV7-43P04211 117 aa13.05□□□□□ -0.32
CAPN1-220ENST00000530567 SRSF9Q13242 221 aaKnown RBP eCLIP13.05□□□□□ -0.32
CAPN1-220ENST00000530567 C14orf144Q96I85 54 aa13.05□□□□□ -0.32
CAPN1-220ENST00000530567 SPANXB1Q9NS25 103 aaPredicted RBP13.05□□□□□ -0.32
CAPN1-220ENST00000530567 TRBV10-2A0A0K0K1G8 114 aa13.05□□□□□ -0.32
CAPN1-220ENST00000530567 Q6ZVH6 145 aa13.04□□□□□ -0.32
CAPN1-220ENST00000530567 PPDPFQ9H3Y8 114 aa13.04□□□□□ -0.32
CAPN1-220ENST00000530567 IFITM1P13164 125 aa13.03□□□□□ -0.32
CAPN1-220ENST00000530567 TRBV10-3A0A0K0K1G6 114 aa13.02□□□□□ -0.33
CAPN1-220ENST00000530567 BCE1O60756 84 aa13.02□□□□□ -0.33
CAPN1-220ENST00000530567 MYCBP2O75592 4640 aa13.01□□□□□ -0.33
CAPN1-220ENST00000530567 MUSTN1Q8IVN3 82 aa13□□□□□ -0.33
CAPN1-220ENST00000530567 TMEM126AQ9H061 195 aa13□□□□□ -0.33
CAPN1-220ENST00000530567 REG3GQ6UW15 175 aa12.99□□□□□ -0.33
CAPN1-220ENST00000530567 SPINK6Q6UWN8 80 aa12.99□□□□□ -0.33
CAPN1-220ENST00000530567 IGLV6-57P01721 117 aa12.98□□□□□ -0.33
CAPN1-220ENST00000530567 SLC25A34Q6PIV7 304 aa12.98□□□□□ -0.33
CAPN1-220ENST00000530567 DDTP30046 118 aa12.97□□□□□ -0.33
CAPN1-220ENST00000530567 C2orf91Q6ZV80 131 aa12.97□□□□□ -0.33
CAPN1-220ENST00000530567 COPS9Q8WXC6 57 aa12.97□□□□□ -0.33
CAPN1-220ENST00000530567 KCNQ1DNQ9H478 68 aa12.97□□□□□ -0.33
CAPN1-220ENST00000530567 PRYO14603 147 aa12.96□□□□□ -0.33
CAPN1-220ENST00000530567 KRTAP13-1Q8IUC0 172 aa12.96□□□□□ -0.33
CAPN1-220ENST00000530567 LOC105371267A0A1B0GV96 52 aa12.96□□□□□ -0.34
CAPN1-220ENST00000530567 ZNF861PO60384 105 aa12.95□□□□□ -0.34
CAPN1-220ENST00000530567 SPRR1AP35321 89 aa12.95□□□□□ -0.34
CAPN1-220ENST00000530567 LINC00337Q8N6G1 96 aa12.95□□□□□ -0.34
CAPN1-220ENST00000530567 HIGD1BQ9P298 99 aa12.95□□□□□ -0.34
CAPN1-220ENST00000530567 LRP1Q07954 4544 aaKnown RBP12.94□□□□□ -0.34
CAPN1-220ENST00000530567 S100A7L2Q5SY68 101 aa12.94□□□□□ -0.34
CAPN1-220ENST00000530567 FAT3Q8TDW7 4589 aa12.93□□□□□ -0.34
CAPN1-220ENST00000530567 KRTAP4-16G5E9R7 235 aaPredicted RBP12.92□□□□□ -0.34
CAPN1-220ENST00000530567 LINC00518Q8N0U6 118 aa12.92□□□□□ -0.34
CAPN1-220ENST00000530567 PRLHP81277 87 aa12.91□□□□□ -0.34
CAPN1-220ENST00000530567 H0Y9J4 135 aa12.9□□□□□ -0.34
CAPN1-220ENST00000530567 SMIM6P0DI80 62 aa12.9□□□□□ -0.34
CAPN1-220ENST00000530567 RPL28P46779 137 aaKnown RBP12.9□□□□□ -0.34
CAPN1-220ENST00000530567 UBE2AP49459 152 aa12.9□□□□□ -0.34
CAPN1-220ENST00000530567 S100A12P80511 92 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms