RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TIMM17BO60830 172 aa4.79□□□□□ -1.64
CD44-228ENST00000528455 SLC25A34Q6PIV7 304 aa4.79□□□□□ -1.64
CD44-228ENST00000528455 C14orf144Q96I85 54 aa4.79□□□□□ -1.64
CD44-228ENST00000528455 DYNC1H1Q14204 4646 aaKnown RBP4.79□□□□□ -1.64
CD44-228ENST00000528455 DNAH11Q96DT5 4516 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 A0A0J9YXY3 114 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 TLX1NBP0CAT3 122 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 Q6ZRU5 148 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 Q6ZVH6 145 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 CARD19Q96LW7 228 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 ERG28Q9UKR5 140 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 PKIGQ9Y2B9 76 aa4.78□□□□□ -1.64
CD44-228ENST00000528455 SCGB1D4Q6XE38 83 aa4.77□□□□□ -1.65
CD44-228ENST00000528455 MIEN1Q9BRT3 115 aa4.77□□□□□ -1.65
CD44-228ENST00000528455 TTTY13Q9BZ97 58 aa4.77□□□□□ -1.65
CD44-228ENST00000528455 HIGD1BQ9P298 99 aa4.77□□□□□ -1.65
CD44-228ENST00000528455 C6orf48Q9UBA6 75 aa4.77□□□□□ -1.65
CD44-228ENST00000528455 UQCR10Q9UDW1 63 aa4.77□□□□□ -1.65
CD44-228ENST00000528455 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.76□□□□□ -1.65
CD44-228ENST00000528455 LOC107984156A0A0G2JMH3 177 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 LOC107984640A0A0U1RRK4 108 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 C16orf90A8MZG2 172 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 NDUFC2-KCTD14E9PQ53 114 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 RYR1P21817 5038 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 LINC00158P58513 81 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 MEIG1Q5JSS6 88 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 SDIM1Q6ZPB5 146 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 ARL17AQ8IVW1 177 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 MPLKIPQ8TAP9 179 aa4.76□□□□□ -1.65
CD44-228ENST00000528455 IGLV5-52A0A0A0MRZ9 124 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 TMEM238C9JI98 176 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 TSTD3H0UI37 97 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 SMIM13P0DJ93 91 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 PFN2P35080 140 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 C9orf116Q5BN46 136 aaPredicted RBP4.75□□□□□ -1.65
CD44-228ENST00000528455 ADAMTSL4-AS1Q5T5F5 129 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 COPS9Q8WXC6 57 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 LITAFQ99732 161 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 PPDPFQ9H3Y8 114 aa4.75□□□□□ -1.65
CD44-228ENST00000528455 SPANXB1Q9NS25 103 aaPredicted RBP4.75□□□□□ -1.65
CD44-228ENST00000528455 IFITM1P13164 125 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 SRSF9Q13242 221 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-228ENST00000528455 TAL2Q16559 108 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 Q6ZRP5 223 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 MIR7-3HGQ8N6C7 128 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 SPANXDQ9BXN6 97 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 PRO1933Q9H354 126 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 SPANXCQ9NY87 97 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 LINC00474Q9P2X8 69 aa4.74□□□□□ -1.65
CD44-228ENST00000528455 CDK2AP2O75956 126 aa4.73□□□□□ -1.65
CD44-228ENST00000528455 C2orf91Q6ZV80 131 aa4.73□□□□□ -1.65
CD44-228ENST00000528455 TP73-AS1Q9UF72 201 aa4.73□□□□□ -1.65
CD44-228ENST00000528455 LRP1BQ9NZR2 4599 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 A0A0A0MQY5 61 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 A0A0U1RRA0 63 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 LINC00308Q8TCZ7 52 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 HIST1H4GQ99525 98 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 KRTAP17-1Q9BYP8 105 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 SND1-IT1Q9HBX3 110 aa4.72□□□□□ -1.65
CD44-228ENST00000528455 NDUFC2O95298 119 aa4.71□□□□□ -1.66
CD44-228ENST00000528455 HNRNPA3P51991 378 aaKnown RBP4.71□□□□□ -1.66
CD44-228ENST00000528455 RPL24P83731 157 aaKnown RBP4.71□□□□□ -1.66
CD44-228ENST00000528455 GAGE2EQ4V326 116 aa4.71□□□□□ -1.66
CD44-228ENST00000528455 MUSTN1Q8IVN3 82 aa4.71□□□□□ -1.66
CD44-228ENST00000528455 DPH3Q96FX2 82 aa4.71□□□□□ -1.66
CD44-228ENST00000528455 GAGE2DQ9UEU5 116 aa4.71□□□□□ -1.66
CD44-228ENST00000528455 ABCA13Q86UQ4 5058 aa4.71□□□□□ -1.66
CD44-228ENST00000528455 HSPG2P98160 4391 aa4.7□□□□□ -1.66
CD44-228ENST00000528455 DNAH5Q8TE73 4624 aa4.7□□□□□ -1.66
CD44-228ENST00000528455 A0A096LNI7 61 aa4.7□□□□□ -1.66
CD44-228ENST00000528455 EPM2AB3EWF7 344 aa4.7□□□□□ -1.66
CD44-228ENST00000528455 RPL18AQ02543 176 aaKnown RBP4.7□□□□□ -1.66
CD44-228ENST00000528455 GAGE2BQ13066 116 aa4.7□□□□□ -1.66
CD44-228ENST00000528455 C9orf129Q5T035 196 aaKnown RBP4.7□□□□□ -1.66
CD44-228ENST00000528455 DAND5Q8N907 189 aa4.7□□□□□ -1.66
CD44-228ENST00000528455 DDTP30046 118 aa4.69□□□□□ -1.66
CD44-228ENST00000528455 FUSP35637 526 aaKnown RBP eCLIP4.69□□□□□ -1.66
CD44-228ENST00000528455 HSD52Q0P140 79 aa4.69□□□□□ -1.66
CD44-228ENST00000528455 LINC01620Q4KN68 170 aa4.69□□□□□ -1.66
CD44-228ENST00000528455 SOSTDC1Q6X4U4 206 aa4.69□□□□□ -1.66
CD44-228ENST00000528455 CEND1Q8N111 149 aa4.69□□□□□ -1.66
CD44-228ENST00000528455 XAGE1AQ9HD64 81 aa4.69□□□□□ -1.66
CD44-228ENST00000528455 IGLV5-37A0A075B6J1 123 aa4.68□□□□□ -1.66
CD44-228ENST00000528455 TRBV10-2A0A0K0K1G8 114 aa4.68□□□□□ -1.66
CD44-228ENST00000528455 CTAG1AP78358 180 aa4.68□□□□□ -1.66
CD44-228ENST00000528455 Q6ZSA8 131 aa4.68□□□□□ -1.66
CD44-228ENST00000528455 APOBP04114 4563 aaKnown RBP4.67□□□□□ -1.66
CD44-228ENST00000528455 IGKV2-24A0A0C4DH68 120 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 A0A1W2PNN7 141 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 A4D1N5 150 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 M0R378 163 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 KRTAP10-1P60331 282 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 LBHQ53QV2 105 aaPredicted RBP4.67□□□□□ -1.66
CD44-228ENST00000528455 SPACA4Q8TDM5 124 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 PLAC8Q9NZF1 115 aa4.67□□□□□ -1.66
CD44-228ENST00000528455 A0A087WYN8 130 aa4.66□□□□□ -1.66
CD44-228ENST00000528455 M0R143 59 aa4.66□□□□□ -1.66
CD44-228ENST00000528455 IGKV2-30P06310 120 aa4.66□□□□□ -1.66
CD44-228ENST00000528455 CHTF8P0CG12 524 aa4.66□□□□□ -1.66
CD44-228ENST00000528455 VPREB1P12018 145 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms