RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 C2orf48Q96LS8 159 aa10.59□□□□□ -0.71
USH1C-204ENST00000526313 C1orf43Q9BWL3 253 aa10.59□□□□□ -0.71
USH1C-204ENST00000526313 C22orf24Q9Y442 160 aa10.59□□□□□ -0.71
USH1C-204ENST00000526313 LINC00588Q9Y4M8 146 aa10.59□□□□□ -0.71
USH1C-204ENST00000526313 ZNF561-AS1K7EIQ3 104 aa10.58□□□□□ -0.72
USH1C-204ENST00000526313 BAALC-AS2P0C853 105 aa10.58□□□□□ -0.72
USH1C-204ENST00000526313 A0A087WYN8 130 aa10.57□□□□□ -0.72
USH1C-204ENST00000526313 F8WDY8 70 aa10.57□□□□□ -0.72
USH1C-204ENST00000526313 HIGD2BQ4VC39 106 aa10.56□□□□□ -0.72
USH1C-204ENST00000526313 MT-ATP8P03928 68 aa10.55□□□□□ -0.72
USH1C-204ENST00000526313 XGP55808 180 aa10.55□□□□□ -0.72
USH1C-204ENST00000526313 IGKV2D-24A0A075B6R9 120 aa10.55□□□□□ -0.72
USH1C-204ENST00000526313 CAMK2N2Q96S95 79 aa10.55□□□□□ -0.72
USH1C-204ENST00000526313 UPK3BQ9BT76 320 aa10.54□□□□□ -0.72
USH1C-204ENST00000526313 Q9HAA7 133 aa10.54□□□□□ -0.72
USH1C-204ENST00000526313 Q6ZRU5 148 aa10.54□□□□□ -0.72
USH1C-204ENST00000526313 A0A1B0GX51 115 aa10.53□□□□□ -0.72
USH1C-204ENST00000526313 NCR3O14931 201 aa10.53□□□□□ -0.72
USH1C-204ENST00000526313 IGLV6-57P01721 117 aa10.53□□□□□ -0.72
USH1C-204ENST00000526313 LINC00167Q96N53 147 aa10.53□□□□□ -0.72
USH1C-204ENST00000526313 DNAH9Q9NYC9 4486 aa10.53□□□□□ -0.72
USH1C-204ENST00000526313 DNAH1Q9P2D7 4330 aa10.52□□□□□ -0.73
USH1C-204ENST00000526313 LECT2O14960 151 aa10.51□□□□□ -0.73
USH1C-204ENST00000526313 DNAL4O96015 105 aa10.51□□□□□ -0.73
USH1C-204ENST00000526313 FAM240AA0A1B0GVK7 77 aa10.5□□□□□ -0.73
USH1C-204ENST00000526313 NDUFC2-KCTD14E9PQ53 114 aa10.49□□□□□ -0.73
USH1C-204ENST00000526313 S100A7L2Q5SY68 101 aa10.49□□□□□ -0.73
USH1C-204ENST00000526313 XAGE1AQ9HD64 81 aa10.49□□□□□ -0.73
USH1C-204ENST00000526313 RPL18AQ02543 176 aaKnown RBP10.48□□□□□ -0.73
USH1C-204ENST00000526313 C6orf99Q4VX62 202 aa10.48□□□□□ -0.73
USH1C-204ENST00000526313 Q8N814 137 aa10.48□□□□□ -0.73
USH1C-204ENST00000526313 B9D2Q9BPU9 175 aa10.48□□□□□ -0.73
USH1C-204ENST00000526313 VPREB1P12018 145 aa10.47□□□□□ -0.73
USH1C-204ENST00000526313 SYCNQ0VAF6 134 aa10.47□□□□□ -0.73
USH1C-204ENST00000526313 OBSCN-AS1Q96MR7 158 aa10.47□□□□□ -0.73
USH1C-204ENST00000526313 COL7A1Q02388 2944 aa10.46□□□□□ -0.73
USH1C-204ENST00000526313 DYNC2H1Q8NCM8 4307 aaKnown RBP10.46□□□□□ -0.74
USH1C-204ENST00000526313 RMI2Q96E14 147 aa10.45□□□□□ -0.74
USH1C-204ENST00000526313 ORMDL1Q9P0S3 153 aa10.45□□□□□ -0.74
USH1C-204ENST00000526313 TRBV10-3A0A0K0K1G6 114 aa10.44□□□□□ -0.74
USH1C-204ENST00000526313 INAFM2P0DMQ5 153 aa10.44□□□□□ -0.74
USH1C-204ENST00000526313 LINC00575Q6W349 94 aa10.44□□□□□ -0.74
USH1C-204ENST00000526313 Q6ZRP5 223 aa10.44□□□□□ -0.74
USH1C-204ENST00000526313 SNCGO76070 127 aa10.43□□□□□ -0.74
USH1C-204ENST00000526313 SLPIP03973 132 aa10.43□□□□□ -0.74
USH1C-204ENST00000526313 ACYP1P07311 99 aa10.43□□□□□ -0.74
USH1C-204ENST00000526313 TLX1NBP0CAT3 122 aa10.43□□□□□ -0.74
USH1C-204ENST00000526313 STAB2Q8WWQ8 2551 aa10.43□□□□□ -0.74
USH1C-204ENST00000526313 C9orf129Q5T035 196 aaKnown RBP10.42□□□□□ -0.74
USH1C-204ENST00000526313 CASC10Q5T4H9 136 aa10.42□□□□□ -0.74
USH1C-204ENST00000526313 USP17L23D6RBM5 183 aa10.42□□□□□ -0.74
USH1C-204ENST00000526313 M0R378 163 aa10.42□□□□□ -0.74
USH1C-204ENST00000526313 APLNQ9ULZ1 77 aa10.41□□□□□ -0.74
USH1C-204ENST00000526313 TRAV23DV6A0A075B6W5 121 aa10.4□□□□□ -0.74
USH1C-204ENST00000526313 GAGE2EQ4V326 116 aa10.4□□□□□ -0.74
USH1C-204ENST00000526313 GAGE2DQ9UEU5 116 aa10.4□□□□□ -0.74
USH1C-204ENST00000526313 TRBV7-6A0A0J9YX20 115 aa10.39□□□□□ -0.75
USH1C-204ENST00000526313 TMEM256-PLSCR3K7ERE1 68 aa10.39□□□□□ -0.75
USH1C-204ENST00000526313 GAGE2BQ13066 116 aa10.39□□□□□ -0.75
USH1C-204ENST00000526313 SDIM1Q6ZPB5 146 aa10.39□□□□□ -0.75
USH1C-204ENST00000526313 ANAPC13Q9BS18 74 aa10.39□□□□□ -0.75
USH1C-204ENST00000526313 hADV29S1A0JD25 119 aa10.38□□□□□ -0.75
USH1C-204ENST00000526313 DIRC1Q969H9 104 aa10.37□□□□□ -0.75
USH1C-204ENST00000526313 PLA2G2DQ9UNK4 145 aa10.37□□□□□ -0.75
USH1C-204ENST00000526313 ZNF73O43830 326 aaPredicted RBP10.37□□□□□ -0.75
USH1C-204ENST00000526313 NHLRC4P0CG21 123 aaPredicted RBP10.36□□□□□ -0.75
USH1C-204ENST00000526313 KRTAP1-5Q9BYS1 174 aa10.36□□□□□ -0.75
USH1C-204ENST00000526313 ELOF1P60002 83 aaKnown RBP10.34□□□□□ -0.75
USH1C-204ENST00000526313 C14orf132Q9NPU4 83 aa10.34□□□□□ -0.75
USH1C-204ENST00000526313 Q6Q795 121 aa10.34□□□□□ -0.75
USH1C-204ENST00000526313 JMJD7-PLA2G4BH0Y9G9 81 aa10.33□□□□□ -0.76
USH1C-204ENST00000526313 COX7BP24311 80 aa10.33□□□□□ -0.76
USH1C-204ENST00000526313 IGLV5-37A0A075B6J1 123 aa10.32□□□□□ -0.76
USH1C-204ENST00000526313 TTC32Q5I0X7 151 aa10.32□□□□□ -0.76
USH1C-204ENST00000526313 SERTAD4-AS1Q5TG53 156 aa10.32□□□□□ -0.76
USH1C-204ENST00000526313 H3BQ85 93 aa10.31□□□□□ -0.76
USH1C-204ENST00000526313 GAGE2AQ6NT46 116 aa10.31□□□□□ -0.76
USH1C-204ENST00000526313 SMCR5Q8TEV8 140 aa10.31□□□□□ -0.76
USH1C-204ENST00000526313 LYSTQ99698 3801 aa10.31□□□□□ -0.76
USH1C-204ENST00000526313 KCNQ1DNQ9H478 68 aa10.31□□□□□ -0.76
USH1C-204ENST00000526313 NDUFV3P56181 108 aaKnown RBP10.3□□□□□ -0.76
USH1C-204ENST00000526313 CSMD3Q7Z407 3707 aa10.3□□□□□ -0.76
USH1C-204ENST00000526313 LINC00528Q8N1L1 170 aa10.3□□□□□ -0.76
USH1C-204ENST00000526313 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.29□□□□□ -0.76
USH1C-204ENST00000526313 LINC00643Q86TS7 51 aa10.29□□□□□ -0.76
USH1C-204ENST00000526313 UBE2DNLQ8IWF7 75 aa10.29□□□□□ -0.76
USH1C-204ENST00000526313 C7orf33Q8WU49 177 aa10.29□□□□□ -0.76
USH1C-204ENST00000526313 Q6ZQY7 126 aa10.28□□□□□ -0.76
USH1C-204ENST00000526313 NKAPP1Q8N9T2 125 aa10.28□□□□□ -0.76
USH1C-204ENST00000526313 CCKP06307 115 aa10.28□□□□□ -0.76
USH1C-204ENST00000526313 TRBV7-7A0A0K0K1E9 115 aa10.27□□□□□ -0.77
USH1C-204ENST00000526313 LOC107984640A0A0U1RRK4 108 aa10.27□□□□□ -0.77
USH1C-204ENST00000526313 NUPR2A6NF83 97 aa10.27□□□□□ -0.77
USH1C-204ENST00000526313 KRTAP7-1Q8IUC3 87 aa10.27□□□□□ -0.77
USH1C-204ENST00000526313 PLECQ15149 4684 aaKnown RBP10.27□□□□□ -0.77
USH1C-204ENST00000526313 DNAH7Q8WXX0 4024 aa10.26□□□□□ -0.77
USH1C-204ENST00000526313 CNBPP62633 177 aaKnown RBP10.25□□□□□ -0.77
USH1C-204ENST00000526313 DNAH10Q8IVF4 4471 aa10.25□□□□□ -0.77
USH1C-204ENST00000526313 FAM168BA1KXE4 195 aa10.24□□□□□ -0.77
USH1C-204ENST00000526313 IMUPQ9GZP8 106 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms