RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 M0QXV9 152 aa18.58■□□□□ 0.56
LIMCH1-211ENST00000509638 TIMM17BO60830 172 aa18.56■□□□□ 0.56
LIMCH1-211ENST00000509638 SPATA45Q537H7 98 aa18.56■□□□□ 0.56
LIMCH1-211ENST00000509638 ADAMTSL4-AS1Q5T5F5 129 aa18.56■□□□□ 0.56
LIMCH1-211ENST00000509638 LITAFQ99732 161 aa18.56■□□□□ 0.56
LIMCH1-211ENST00000509638 PHF5AQ7RTV0 110 aaKnown RBP18.55■□□□□ 0.56
LIMCH1-211ENST00000509638 PLA2G2DQ9UNK4 145 aa18.55■□□□□ 0.56
LIMCH1-211ENST00000509638 KRTAP17-1Q9BYP8 105 aa18.54■□□□□ 0.56
LIMCH1-211ENST00000509638 C7orf33Q8WU49 177 aa18.53■□□□□ 0.56
LIMCH1-211ENST00000509638 TP73-AS1Q9UF72 201 aa18.53■□□□□ 0.56
LIMCH1-211ENST00000509638 Q8N1X5 172 aa18.52■□□□□ 0.56
LIMCH1-211ENST00000509638 Q8NDZ9 215 aa18.52■□□□□ 0.56
LIMCH1-211ENST00000509638 VPS13BQ7Z7G8 4022 aa18.51■□□□□ 0.55
LIMCH1-211ENST00000509638 NPC2P61916 151 aa18.51■□□□□ 0.55
LIMCH1-211ENST00000509638 MIEN1Q9BRT3 115 aa18.51■□□□□ 0.55
LIMCH1-211ENST00000509638 C22orf24Q9Y442 160 aa18.51■□□□□ 0.55
LIMCH1-211ENST00000509638 TMEM238C9JI98 176 aa18.5■□□□□ 0.55
LIMCH1-211ENST00000509638 COX8AP10176 69 aa18.5■□□□□ 0.55
LIMCH1-211ENST00000509638 VPREB1P12018 145 aa18.5■□□□□ 0.55
LIMCH1-211ENST00000509638 BOD1L2Q8IYS8 172 aa18.5■□□□□ 0.55
LIMCH1-211ENST00000509638 NKAPP1Q8N9T2 125 aa18.5■□□□□ 0.55
LIMCH1-211ENST00000509638 IGLV5-37A0A075B6J1 123 aa18.49■□□□□ 0.55
LIMCH1-211ENST00000509638 Q5VSD8 79 aa18.49■□□□□ 0.55
LIMCH1-211ENST00000509638 RPL24P83731 157 aaKnown RBP18.48■□□□□ 0.55
LIMCH1-211ENST00000509638 FAM229AH3BQW9 127 aa18.47■□□□□ 0.55
LIMCH1-211ENST00000509638 SOSTDC1Q6X4U4 206 aa18.47■□□□□ 0.55
LIMCH1-211ENST00000509638 MRPL55Q7Z7F7 128 aaKnown RBP18.47■□□□□ 0.55
LIMCH1-211ENST00000509638 C14orf144Q96I85 54 aa18.47■□□□□ 0.55
LIMCH1-211ENST00000509638 SRRM2Q9UQ35 2752 aaKnown RBP18.45■□□□□ 0.54
LIMCH1-211ENST00000509638 LOC107984156A0A0G2JMH3 177 aa18.45■□□□□ 0.54
LIMCH1-211ENST00000509638 EIF4EBP3O60516 100 aaPredicted RBP18.45■□□□□ 0.54
LIMCH1-211ENST00000509638 ARL17AQ8IVW1 177 aa18.45■□□□□ 0.54
LIMCH1-211ENST00000509638 SPANXDQ9BXN6 97 aa18.44■□□□□ 0.54
LIMCH1-211ENST00000509638 SPANXCQ9NY87 97 aa18.44■□□□□ 0.54
LIMCH1-211ENST00000509638 RPL37AP61513 92 aaKnown RBP18.43■□□□□ 0.54
LIMCH1-211ENST00000509638 UBE2BP63146 152 aa18.43■□□□□ 0.54
LIMCH1-211ENST00000509638 LINC00308Q8TCZ7 52 aa18.43■□□□□ 0.54
LIMCH1-211ENST00000509638 LOC105371267A0A1B0GV96 52 aa18.42■□□□□ 0.54
LIMCH1-211ENST00000509638 GAGE10A6NGK3 116 aa18.42■□□□□ 0.54
LIMCH1-211ENST00000509638 LBHQ53QV2 105 aaPredicted RBP18.42■□□□□ 0.54
LIMCH1-211ENST00000509638 DLEU1O43261 78 aa18.41■□□□□ 0.54
LIMCH1-211ENST00000509638 KRTAP11-1Q8IUC1 163 aa18.4■□□□□ 0.54
LIMCH1-211ENST00000509638 NCR3O14931 201 aa18.39■□□□□ 0.53
LIMCH1-211ENST00000509638 LINC00167Q96N53 147 aa18.39■□□□□ 0.53
LIMCH1-211ENST00000509638 PLA2G1BP04054 148 aaKnown RBP18.38■□□□□ 0.53
LIMCH1-211ENST00000509638 PRR3P79522 188 aaKnown RBP18.38■□□□□ 0.53
LIMCH1-211ENST00000509638 SLC25A34Q6PIV7 304 aa18.38■□□□□ 0.53
LIMCH1-211ENST00000509638 S100A12P80511 92 aa18.38■□□□□ 0.53
LIMCH1-211ENST00000509638 SMIM6P0DI80 62 aa18.37■□□□□ 0.53
LIMCH1-211ENST00000509638 Q6ZVH6 145 aa18.37■□□□□ 0.53
LIMCH1-211ENST00000509638 RPL37AP8A6NKH3 93 aa18.36■□□□□ 0.53
LIMCH1-211ENST00000509638 PSORS1C2Q9UIG4 136 aa18.36■□□□□ 0.53
LIMCH1-211ENST00000509638 SPANXB1Q9NS25 103 aaPredicted RBP18.35■□□□□ 0.53
LIMCH1-211ENST00000509638 KRTAP10-4P60372 401 aaPredicted RBP18.34■□□□□ 0.53
LIMCH1-211ENST00000509638 M0R378 163 aa18.34■□□□□ 0.53
LIMCH1-211ENST00000509638 NDUFC2O95298 119 aa18.34■□□□□ 0.53
LIMCH1-211ENST00000509638 IGKV2-28A0A075B6P5 120 aa18.33■□□□□ 0.52
LIMCH1-211ENST00000509638 IGKV2D-28P01615 120 aa18.33■□□□□ 0.52
LIMCH1-211ENST00000509638 IFITM1P13164 125 aa18.33■□□□□ 0.52
LIMCH1-211ENST00000509638 SRSF9Q13242 221 aaKnown RBP eCLIP18.33■□□□□ 0.52
LIMCH1-211ENST00000509638 COPS9Q8WXC6 57 aa18.33■□□□□ 0.52
LIMCH1-211ENST00000509638 KRTAP4-5Q9BYR2 181 aa18.33■□□□□ 0.52
LIMCH1-211ENST00000509638 MUSTN1Q8IVN3 82 aa18.3■□□□□ 0.52
LIMCH1-211ENST00000509638 C2orf91Q6ZV80 131 aa18.29■□□□□ 0.52
LIMCH1-211ENST00000509638 TRBV10-2A0A0K0K1G8 114 aa18.28■□□□□ 0.52
LIMCH1-211ENST00000509638 C1orf137Q5JT78 98 aa18.28■□□□□ 0.52
LIMCH1-211ENST00000509638 PPDPFQ9H3Y8 114 aa18.28■□□□□ 0.52
LIMCH1-211ENST00000509638 IGLV1-50A0A075B6I6 118 aa18.27■□□□□ 0.52
LIMCH1-211ENST00000509638 HIGD1BQ9P298 99 aa18.26■□□□□ 0.51
LIMCH1-211ENST00000509638 HIST1H4GQ99525 98 aa18.25■□□□□ 0.51
LIMCH1-211ENST00000509638 TRBV10-3A0A0K0K1G6 114 aa18.23■□□□□ 0.51
LIMCH1-211ENST00000509638 ABCA13Q86UQ4 5058 aa18.23■□□□□ 0.51
LIMCH1-211ENST00000509638 DDTP30046 118 aa18.21■□□□□ 0.51
LIMCH1-211ENST00000509638 UQCR10Q9UDW1 63 aa18.21■□□□□ 0.51
LIMCH1-211ENST00000509638 S100A7L2Q5SY68 101 aa18.2■□□□□ 0.5
LIMCH1-211ENST00000509638 HNRNPA3P51991 378 aaKnown RBP18.19■□□□□ 0.5
LIMCH1-211ENST00000509638 TMEM126AQ9H061 195 aa18.18■□□□□ 0.5
LIMCH1-211ENST00000509638 IGLV6-57P01721 117 aa18.17■□□□□ 0.5
LIMCH1-211ENST00000509638 REG3GQ6UW15 175 aa18.17■□□□□ 0.5
LIMCH1-211ENST00000509638 LINC00518Q8N0U6 118 aa18.17■□□□□ 0.5
LIMCH1-211ENST00000509638 LINC00337Q8N6G1 96 aa18.17■□□□□ 0.5
LIMCH1-211ENST00000509638 BCE1O60756 84 aa18.16■□□□□ 0.5
LIMCH1-211ENST00000509638 IGLV7-43P04211 117 aa18.16■□□□□ 0.5
LIMCH1-211ENST00000509638 PRYO14603 147 aa18.15■□□□□ 0.5
LIMCH1-211ENST00000509638 C12orf57Q99622 126 aa18.15■□□□□ 0.5
LIMCH1-211ENST00000509638 PRO1933Q9H354 126 aa18.15■□□□□ 0.5
LIMCH1-211ENST00000509638 A4D1N5 150 aa18.14■□□□□ 0.49
LIMCH1-211ENST00000509638 OR13C6PQ8NH95 151 aa18.14■□□□□ 0.49
LIMCH1-211ENST00000509638 KCNQ1DNQ9H478 68 aa18.14■□□□□ 0.49
LIMCH1-211ENST00000509638 PKHD1L1Q86WI1 4243 aa18.14■□□□□ 0.49
LIMCH1-211ENST00000509638 TAL2Q16559 108 aa18.1■□□□□ 0.49
LIMCH1-211ENST00000509638 TRAV23DV6A0A075B6W5 121 aa18.09■□□□□ 0.49
LIMCH1-211ENST00000509638 INAFM2P0DMQ5 153 aa18.09■□□□□ 0.49
LIMCH1-211ENST00000509638 FLG2Q5D862 2391 aaPredicted RBP18.09■□□□□ 0.49
LIMCH1-211ENST00000509638 A6NDN8 102 aa18.06■□□□□ 0.48
LIMCH1-211ENST00000509638 SPRR1AP35321 89 aa18.06■□□□□ 0.48
LIMCH1-211ENST00000509638 UBE2AP49459 152 aa18.06■□□□□ 0.48
LIMCH1-211ENST00000509638 FAM19A1Q7Z5A9 133 aa18.06■□□□□ 0.48
LIMCH1-211ENST00000509638 CEND1Q8N111 149 aa18.06■□□□□ 0.48
LIMCH1-211ENST00000509638 PRLHP81277 87 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms