RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 TMEM238C9JI98 176 aa6.72□□□□□ -1.33
HMGCS1-204ENST00000507293 LINC00304Q8N9R0 145 aa6.72□□□□□ -1.33
HMGCS1-204ENST00000507293 TMEM126AQ9H061 195 aa6.72□□□□□ -1.33
HMGCS1-204ENST00000507293 HSBP1O75506 76 aa6.71□□□□□ -1.34
HMGCS1-204ENST00000507293 ZNF625Q96I27 306 aaPredicted RBP6.71□□□□□ -1.34
HMGCS1-204ENST00000507293 IGKV2D-26A0A0A0MRZ7 120 aa6.7□□□□□ -1.34
HMGCS1-204ENST00000507293 M0R378 163 aa6.7□□□□□ -1.34
HMGCS1-204ENST00000507293 RPL24P83731 157 aaKnown RBP6.7□□□□□ -1.34
HMGCS1-204ENST00000507293 PMCHL1Q16048 86 aa6.7□□□□□ -1.34
HMGCS1-204ENST00000507293 Q8NDZ9 215 aa6.7□□□□□ -1.34
HMGCS1-204ENST00000507293 C11orf86A6NJI1 115 aa6.69□□□□□ -1.34
HMGCS1-204ENST00000507293 COX17Q14061 63 aa6.69□□□□□ -1.34
HMGCS1-204ENST00000507293 TMEM170BQ5T4T1 132 aa6.68□□□□□ -1.34
HMGCS1-204ENST00000507293 MUC2Q02817 5179 aa6.68□□□□□ -1.34
HMGCS1-204ENST00000507293 ATP6V1G1O75348 118 aa6.67□□□□□ -1.34
HMGCS1-204ENST00000507293 SFTA2Q6UW10 78 aa6.67□□□□□ -1.34
HMGCS1-204ENST00000507293 IFI27L1Q96BM0 104 aa6.67□□□□□ -1.34
HMGCS1-204ENST00000507293 SERF1AO75920 110 aa6.66□□□□□ -1.34
HMGCS1-204ENST00000507293 C3orf22Q8N5N4 141 aa6.66□□□□□ -1.34
HMGCS1-204ENST00000507293 PLEKHB2Q96CS7 222 aa6.66□□□□□ -1.34
HMGCS1-204ENST00000507293 HIGD2AQ9BW72 106 aa6.66□□□□□ -1.34
HMGCS1-204ENST00000507293 IGLV7-46A0A075B6I9 117 aa6.65□□□□□ -1.34
HMGCS1-204ENST00000507293 LINC00158P58513 81 aa6.65□□□□□ -1.34
HMGCS1-204ENST00000507293 TPRXLQ17RH7 258 aa6.65□□□□□ -1.34
HMGCS1-204ENST00000507293 FAM19A2Q8N3H0 131 aa6.65□□□□□ -1.34
HMGCS1-204ENST00000507293 CDIP1Q9H305 208 aa6.65□□□□□ -1.34
HMGCS1-204ENST00000507293 TRAV12-1A0A0B4J245 112 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 A0A0U1RRA0 63 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BKO60814 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 LEPROTL1O95214 131 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BJP06899 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BOP23527 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BBP33778 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BDP58876 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BCP62807 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST2H2BEQ16778 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BHQ93079 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BNQ99877 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HIST1H2BMQ99879 126 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 HSPB8Q9UJY1 196 aa6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 CHTOPQ9Y3Y2 248 aaKnown RBP6.64□□□□□ -1.35
HMGCS1-204ENST00000507293 CTAG1AP78358 180 aa6.63□□□□□ -1.35
HMGCS1-204ENST00000507293 SPRR4Q96PI1 79 aa6.63□□□□□ -1.35
HMGCS1-204ENST00000507293 TMEM223A0PJW6 202 aa6.62□□□□□ -1.35
HMGCS1-204ENST00000507293 LINC00310P59036 64 aa6.62□□□□□ -1.35
HMGCS1-204ENST00000507293 LCE2AQ5TA79 106 aaPredicted RBP6.62□□□□□ -1.35
HMGCS1-204ENST00000507293 MUC17Q685J3 4493 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 PRYO14603 147 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 NCR3O14931 201 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 SMIM13P0DJ93 91 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 FABP4P15090 132 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 SPAG11AQ6PDA7 123 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 PPDPFQ9H3Y8 114 aa6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 ZNF706Q9Y5V0 76 aaPredicted RBP6.6□□□□□ -1.35
HMGCS1-204ENST00000507293 H0Y8G0 127 aa6.59□□□□□ -1.35
HMGCS1-204ENST00000507293 MEIG1Q5JSS6 88 aa6.59□□□□□ -1.35
HMGCS1-204ENST00000507293 BOD1L2Q8IYS8 172 aa6.59□□□□□ -1.35
HMGCS1-204ENST00000507293 MAP1LC3CQ9BXW4 147 aa6.59□□□□□ -1.35
HMGCS1-204ENST00000507293 KRTAP9-2Q9BYQ4 174 aa6.59□□□□□ -1.35
HMGCS1-204ENST00000507293 FAT4Q6V0I7 4981 aa6.59□□□□□ -1.35
HMGCS1-204ENST00000507293 SPRR1AP35321 89 aa6.58□□□□□ -1.36
HMGCS1-204ENST00000507293 COA6Q5JTJ3 125 aaKnown RBP6.58□□□□□ -1.36
HMGCS1-204ENST00000507293 MIR7-3HGQ8N6C7 128 aa6.58□□□□□ -1.36
HMGCS1-204ENST00000507293 PLNP26678 52 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 C4orf48Q5BLP8 95 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 LINC00337Q8N6G1 96 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 DAND5Q8N907 189 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 Q8NBF4 154 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 SMCR5Q8TEV8 140 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 KCNQ1DNQ9H478 68 aa6.57□□□□□ -1.36
HMGCS1-204ENST00000507293 ETDCA0A1B0GVM5 59 aa6.56□□□□□ -1.36
HMGCS1-204ENST00000507293 HERV-K104P63124 156 aa6.56□□□□□ -1.36
HMGCS1-204ENST00000507293 FP248Q71RG6 208 aaPredicted RBP6.56□□□□□ -1.36
HMGCS1-204ENST00000507293 TRBV10-3A0A0K0K1G6 114 aa6.55□□□□□ -1.36
HMGCS1-204ENST00000507293 KRTAP4-16G5E9R7 235 aaPredicted RBP6.55□□□□□ -1.36
HMGCS1-204ENST00000507293 NDUFA12Q9UI09 145 aa6.55□□□□□ -1.36
HMGCS1-204ENST00000507293 DPM2O94777 84 aa6.54□□□□□ -1.36
HMGCS1-204ENST00000507293 MYMXA0A1B0GTQ4 84 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 LINC00587B1AMM8 73 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 SYS1-DBNDD2H3BUS1 97 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 IGKCP01834 107 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 HERVK_113P61574 105 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 KRTAP13-3Q3SY46 172 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 LINC00483Q53H64 154 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 PET117Q6UWS5 81 aa6.53□□□□□ -1.36
HMGCS1-204ENST00000507293 S100A6P06703 90 aa6.52□□□□□ -1.37
HMGCS1-204ENST00000507293 TSPEAR-AS2P59090 65 aa6.52□□□□□ -1.37
HMGCS1-204ENST00000507293 S100A12P80511 92 aa6.52□□□□□ -1.37
HMGCS1-204ENST00000507293 GAGE2AQ6NT46 116 aa6.52□□□□□ -1.37
HMGCS1-204ENST00000507293 PMCHL2Q9BQD1 86 aa6.52□□□□□ -1.37
HMGCS1-204ENST00000507293 B5MCH6 92 aa6.51□□□□□ -1.37
HMGCS1-204ENST00000507293 ERC2-IT1O76042 136 aa6.51□□□□□ -1.37
HMGCS1-204ENST00000507293 SPINK1P00995 79 aa6.51□□□□□ -1.37
HMGCS1-204ENST00000507293 MOBPQ13875 183 aa6.51□□□□□ -1.37
HMGCS1-204ENST00000507293 IGLV9-49A0A0B4J1Y8 123 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 C20orf202A1L168 122 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 LEPROTO15243 131 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 C3orf79P0CE67 100 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 S100A2P29034 98 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms