RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 XGP55808 180 aa14.06□□□□□ -0.16
CCDC88B-208ENST00000492980 C15orf56Q8N910 161 aa14.06□□□□□ -0.16
CCDC88B-208ENST00000492980 C1orf43Q9BWL3 253 aa14.06□□□□□ -0.16
CCDC88B-208ENST00000492980 ZNF561-AS1K7EIQ3 104 aa14.06□□□□□ -0.16
CCDC88B-208ENST00000492980 DNAH10OSP0CZ25 163 aa14.06□□□□□ -0.16
CCDC88B-208ENST00000492980 DNAL4O96015 105 aa14.05□□□□□ -0.16
CCDC88B-208ENST00000492980 LECT2O14960 151 aa14.03□□□□□ -0.16
CCDC88B-208ENST00000492980 MT-ATP8P03928 68 aa14.03□□□□□ -0.16
CCDC88B-208ENST00000492980 CAMK2N2Q96S95 79 aa14.03□□□□□ -0.16
CCDC88B-208ENST00000492980 IGKV2D-24A0A075B6R9 120 aa14.02□□□□□ -0.16
CCDC88B-208ENST00000492980 SCGB1A1P11684 91 aa14.02□□□□□ -0.16
CCDC88B-208ENST00000492980 LINC00588Q9Y4M8 146 aa14.02□□□□□ -0.16
CCDC88B-208ENST00000492980 C2orf48Q96LS8 159 aa14□□□□□ -0.17
CCDC88B-208ENST00000492980 S100A7L2Q5SY68 101 aa14□□□□□ -0.17
CCDC88B-208ENST00000492980 Q6ZRU5 148 aa14□□□□□ -0.17
CCDC88B-208ENST00000492980 FAM240AA0A1B0GVK7 77 aa13.99□□□□□ -0.17
CCDC88B-208ENST00000492980 XAGE1AQ9HD64 81 aa13.98□□□□□ -0.17
CCDC88B-208ENST00000492980 RPL18AQ02543 176 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-208ENST00000492980 A0A1B0GX51 115 aa13.96□□□□□ -0.18
CCDC88B-208ENST00000492980 IGLV6-57P01721 117 aa13.96□□□□□ -0.18
CCDC88B-208ENST00000492980 C6orf99Q4VX62 202 aa13.96□□□□□ -0.18
CCDC88B-208ENST00000492980 MDFIQ99750 246 aa13.96□□□□□ -0.18
CCDC88B-208ENST00000492980 SLPIP03973 132 aa13.95□□□□□ -0.18
CCDC88B-208ENST00000492980 LINC00167Q96N53 147 aa13.95□□□□□ -0.18
CCDC88B-208ENST00000492980 MGAM2Q2M2H8 2515 aa13.95□□□□□ -0.18
CCDC88B-208ENST00000492980 F8WDY8 70 aa13.93□□□□□ -0.18
CCDC88B-208ENST00000492980 Q8N814 137 aa13.93□□□□□ -0.18
CCDC88B-208ENST00000492980 NDUFC2-KCTD14E9PQ53 114 aa13.92□□□□□ -0.18
CCDC88B-208ENST00000492980 INAFM2P0DMQ5 153 aa13.92□□□□□ -0.18
CCDC88B-208ENST00000492980 ORMDL1Q9P0S3 153 aa13.92□□□□□ -0.18
CCDC88B-208ENST00000492980 C9orf129Q5T035 196 aaKnown RBP13.91□□□□□ -0.18
CCDC88B-208ENST00000492980 DNAH1Q9P2D7 4330 aa13.9□□□□□ -0.18
CCDC88B-208ENST00000492980 TRBV10-3A0A0K0K1G6 114 aa13.89□□□□□ -0.19
CCDC88B-208ENST00000492980 VPREB1P12018 145 aa13.89□□□□□ -0.19
CCDC88B-208ENST00000492980 SYCNQ0VAF6 134 aa13.89□□□□□ -0.19
CCDC88B-208ENST00000492980 OBSCN-AS1Q96MR7 158 aa13.89□□□□□ -0.19
CCDC88B-208ENST00000492980 UPK3BQ9BT76 320 aa13.89□□□□□ -0.19
CCDC88B-208ENST00000492980 ACYP1P07311 99 aa13.88□□□□□ -0.19
CCDC88B-208ENST00000492980 LINC00575Q6W349 94 aa13.87□□□□□ -0.19
CCDC88B-208ENST00000492980 SNCGO76070 127 aa13.87□□□□□ -0.19
CCDC88B-208ENST00000492980 Q6ZRP5 223 aa13.87□□□□□ -0.19
CCDC88B-208ENST00000492980 GAGE2EQ4V326 116 aa13.86□□□□□ -0.19
CCDC88B-208ENST00000492980 GAGE2DQ9UEU5 116 aa13.86□□□□□ -0.19
CCDC88B-208ENST00000492980 DNAH9Q9NYC9 4486 aa13.86□□□□□ -0.19
CCDC88B-208ENST00000492980 TRAV23DV6A0A075B6W5 121 aa13.85□□□□□ -0.19
CCDC88B-208ENST00000492980 CASC10Q5T4H9 136 aa13.85□□□□□ -0.19
CCDC88B-208ENST00000492980 TTC32Q5I0X7 151 aa13.84□□□□□ -0.19
CCDC88B-208ENST00000492980 C14orf132Q9NPU4 83 aa13.83□□□□□ -0.2
CCDC88B-208ENST00000492980 USP17L23D6RBM5 183 aa13.82□□□□□ -0.2
CCDC88B-208ENST00000492980 RMI2Q96E14 147 aa13.82□□□□□ -0.2
CCDC88B-208ENST00000492980 M0R378 163 aa13.82□□□□□ -0.2
CCDC88B-208ENST00000492980 GAGE2AQ6NT46 116 aa13.81□□□□□ -0.2
CCDC88B-208ENST00000492980 DIRC1Q969H9 104 aa13.81□□□□□ -0.2
CCDC88B-208ENST00000492980 hADV29S1A0JD25 119 aa13.81□□□□□ -0.2
CCDC88B-208ENST00000492980 TMEM256-PLSCR3K7ERE1 68 aa13.8□□□□□ -0.2
CCDC88B-208ENST00000492980 ZNF73O43830 326 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-208ENST00000492980 B9D2Q9BPU9 175 aa13.79□□□□□ -0.2
CCDC88B-208ENST00000492980 COL7A1Q02388 2944 aa13.79□□□□□ -0.2
CCDC88B-208ENST00000492980 SMCR5Q8TEV8 140 aa13.79□□□□□ -0.2
CCDC88B-208ENST00000492980 TLX1NBP0CAT3 122 aa13.78□□□□□ -0.2
CCDC88B-208ENST00000492980 SDIM1Q6ZPB5 146 aa13.78□□□□□ -0.2
CCDC88B-208ENST00000492980 GAGE2BQ13066 116 aa13.77□□□□□ -0.21
CCDC88B-208ENST00000492980 A0A1B0GV72 72 aa13.76□□□□□ -0.21
CCDC88B-208ENST00000492980 Q6Q795 121 aa13.76□□□□□ -0.21
CCDC88B-208ENST00000492980 STAB2Q8WWQ8 2551 aa13.76□□□□□ -0.21
CCDC88B-208ENST00000492980 TRBV7-6A0A0J9YX20 115 aa13.75□□□□□ -0.21
CCDC88B-208ENST00000492980 COX7BP24311 80 aa13.75□□□□□ -0.21
CCDC88B-208ENST00000492980 JMJD7-PLA2G4BH0Y9G9 81 aa13.74□□□□□ -0.21
CCDC88B-208ENST00000492980 ELOF1P60002 83 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-208ENST00000492980 APLNQ9ULZ1 77 aa13.73□□□□□ -0.21
CCDC88B-208ENST00000492980 DYNC2H1Q8NCM8 4307 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-208ENST00000492980 SERTAD4-AS1Q5TG53 156 aa13.72□□□□□ -0.21
CCDC88B-208ENST00000492980 KRTAP1-5Q9BYS1 174 aa13.72□□□□□ -0.21
CCDC88B-208ENST00000492980 Q6ZQY7 126 aa13.72□□□□□ -0.21
CCDC88B-208ENST00000492980 LINC00643Q86TS7 51 aa13.72□□□□□ -0.21
CCDC88B-208ENST00000492980 TRBV7-7A0A0K0K1E9 115 aa13.7□□□□□ -0.22
CCDC88B-208ENST00000492980 NKAPP1Q8N9T2 125 aa13.69□□□□□ -0.22
CCDC88B-208ENST00000492980 PLA2G2DQ9UNK4 145 aa13.69□□□□□ -0.22
CCDC88B-208ENST00000492980 CCKP06307 115 aa13.68□□□□□ -0.22
CCDC88B-208ENST00000492980 UBE2DNLQ8IWF7 75 aa13.67□□□□□ -0.22
CCDC88B-208ENST00000492980 C7orf33Q8WU49 177 aa13.67□□□□□ -0.22
CCDC88B-208ENST00000492980 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-208ENST00000492980 LINC00528Q8N1L1 170 aa13.66□□□□□ -0.22
CCDC88B-208ENST00000492980 LYSTQ99698 3801 aa13.66□□□□□ -0.22
CCDC88B-208ENST00000492980 H3BQ85 93 aa13.65□□□□□ -0.22
CCDC88B-208ENST00000492980 KCNQ1DNQ9H478 68 aa13.65□□□□□ -0.22
CCDC88B-208ENST00000492980 LINC00846Q9NV44 126 aa13.65□□□□□ -0.22
CCDC88B-208ENST00000492980 FAM168BA1KXE4 195 aa13.64□□□□□ -0.23
CCDC88B-208ENST00000492980 IGLV5-37A0A075B6J1 123 aa13.63□□□□□ -0.23
CCDC88B-208ENST00000492980 LAMTOR3Q9UHA4 124 aa13.63□□□□□ -0.23
CCDC88B-208ENST00000492980 IMUPQ9GZP8 106 aa13.62□□□□□ -0.23
CCDC88B-208ENST00000492980 LOC107984640A0A0U1RRK4 108 aa13.61□□□□□ -0.23
CCDC88B-208ENST00000492980 NDUFV3P56181 108 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-208ENST00000492980 RBM3P98179 157 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-208ENST00000492980 KRTAP7-1Q8IUC3 87 aa13.61□□□□□ -0.23
CCDC88B-208ENST00000492980 NHLRC4P0CG21 123 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-208ENST00000492980 DNAH10Q8IVF4 4471 aa13.59□□□□□ -0.23
CCDC88B-208ENST00000492980 ANAPC13Q9BS18 74 aa13.59□□□□□ -0.23
CCDC88B-208ENST00000492980 LOC110117498A0A087WWA1 95 aa13.58□□□□□ -0.24
CCDC88B-208ENST00000492980 Q6ZQT0 140 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms