RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ZNF815PA8K554 130 aa10.49□□□□□ -0.73
TRIM54-203ENST00000485306 SPATA45Q537H7 98 aa10.49□□□□□ -0.73
TRIM54-203ENST00000485306 LOC107984640A0A0U1RRK4 108 aa10.48□□□□□ -0.73
TRIM54-203ENST00000485306 ERG28Q9UKR5 140 aa10.48□□□□□ -0.73
TRIM54-203ENST00000485306 PAM16Q9Y3D7 125 aa10.48□□□□□ -0.73
TRIM54-203ENST00000485306 NDUFC2-KCTD14E9PQ53 114 aa10.47□□□□□ -0.73
TRIM54-203ENST00000485306 MEIG1Q5JSS6 88 aa10.47□□□□□ -0.73
TRIM54-203ENST00000485306 A0A096LNI7 61 aa10.46□□□□□ -0.73
TRIM54-203ENST00000485306 PCP2Q8IVA1 136 aa10.46□□□□□ -0.73
TRIM54-203ENST00000485306 A0A0J9YXY3 114 aa10.45□□□□□ -0.74
TRIM54-203ENST00000485306 DLEU1O43261 78 aa10.45□□□□□ -0.74
TRIM54-203ENST00000485306 COX8AP10176 69 aa10.45□□□□□ -0.74
TRIM54-203ENST00000485306 HNRNPA3P51991 378 aaKnown RBP10.45□□□□□ -0.74
TRIM54-203ENST00000485306 C9orf116Q5BN46 136 aaPredicted RBP10.45□□□□□ -0.74
TRIM54-203ENST00000485306 TIMM17BO60830 172 aa10.44□□□□□ -0.74
TRIM54-203ENST00000485306 BOD1L2Q8IYS8 172 aa10.44□□□□□ -0.74
TRIM54-203ENST00000485306 TTTY13Q9BZ97 58 aa10.44□□□□□ -0.74
TRIM54-203ENST00000485306 PFN2P35080 140 aa10.43□□□□□ -0.74
TRIM54-203ENST00000485306 LINC00158P58513 81 aa10.43□□□□□ -0.74
TRIM54-203ENST00000485306 SERTAD4-AS1Q5TG53 156 aa10.43□□□□□ -0.74
TRIM54-203ENST00000485306 SCGB1D4Q6XE38 83 aa10.43□□□□□ -0.74
TRIM54-203ENST00000485306 PTTG1IPP53801 180 aa10.42□□□□□ -0.74
TRIM54-203ENST00000485306 RPL18AQ02543 176 aaKnown RBP10.42□□□□□ -0.74
TRIM54-203ENST00000485306 Q6ZRP5 223 aa10.42□□□□□ -0.74
TRIM54-203ENST00000485306 SMIM13P0DJ93 91 aa10.41□□□□□ -0.74
TRIM54-203ENST00000485306 GAGE2BQ13066 116 aa10.41□□□□□ -0.74
TRIM54-203ENST00000485306 SLC25A34Q6PIV7 304 aa10.41□□□□□ -0.74
TRIM54-203ENST00000485306 TMEM238C9JI98 176 aa10.4□□□□□ -0.74
TRIM54-203ENST00000485306 C14orf144Q96I85 54 aa10.4□□□□□ -0.74
TRIM54-203ENST00000485306 GAGE2EQ4V326 116 aa10.39□□□□□ -0.75
TRIM54-203ENST00000485306 Q6ZVH6 145 aa10.39□□□□□ -0.75
TRIM54-203ENST00000485306 GAGE2DQ9UEU5 116 aa10.39□□□□□ -0.75
TRIM54-203ENST00000485306 LRP1Q07954 4544 aaKnown RBP10.39□□□□□ -0.75
TRIM54-203ENST00000485306 LCE2AQ5TA79 106 aaPredicted RBP10.38□□□□□ -0.75
TRIM54-203ENST00000485306 LCE2CQ5TA81 110 aa10.38□□□□□ -0.75
TRIM54-203ENST00000485306 MIR7-3HGQ8N6C7 128 aa10.38□□□□□ -0.75
TRIM54-203ENST00000485306 A0A0U1RRA0 63 aa10.37□□□□□ -0.75
TRIM54-203ENST00000485306 COPS9Q8WXC6 57 aa10.37□□□□□ -0.75
TRIM54-203ENST00000485306 C12orf57Q99622 126 aa10.37□□□□□ -0.75
TRIM54-203ENST00000485306 LITAFQ99732 161 aa10.37□□□□□ -0.75
TRIM54-203ENST00000485306 SND1-IT1Q9HBX3 110 aa10.37□□□□□ -0.75
TRIM54-203ENST00000485306 PKHD1L1Q86WI1 4243 aa10.36□□□□□ -0.75
TRIM54-203ENST00000485306 LOC107984156A0A0G2JMH3 177 aa10.36□□□□□ -0.75
TRIM54-203ENST00000485306 PRR3P79522 188 aaKnown RBP10.36□□□□□ -0.75
TRIM54-203ENST00000485306 ARL17AQ8IVW1 177 aa10.36□□□□□ -0.75
TRIM54-203ENST00000485306 HIGD1BQ9P298 99 aa10.36□□□□□ -0.75
TRIM54-203ENST00000485306 UQCR10Q9UDW1 63 aa10.36□□□□□ -0.75
TRIM54-203ENST00000485306 ADAMTSL4-AS1Q5T5F5 129 aa10.35□□□□□ -0.75
TRIM54-203ENST00000485306 LINC00518Q8N0U6 118 aa10.35□□□□□ -0.75
TRIM54-203ENST00000485306 SPANXDQ9BXN6 97 aa10.35□□□□□ -0.75
TRIM54-203ENST00000485306 PPDPFQ9H3Y8 114 aa10.35□□□□□ -0.75
TRIM54-203ENST00000485306 XAGE1AQ9HD64 81 aa10.35□□□□□ -0.75
TRIM54-203ENST00000485306 SPANXB1Q9NS25 103 aaPredicted RBP10.35□□□□□ -0.75
TRIM54-203ENST00000485306 SPANXCQ9NY87 97 aa10.35□□□□□ -0.75
TRIM54-203ENST00000485306 IFITM1P13164 125 aa10.34□□□□□ -0.75
TRIM54-203ENST00000485306 C9orf129Q5T035 196 aaKnown RBP10.34□□□□□ -0.75
TRIM54-203ENST00000485306 MIEN1Q9BRT3 115 aa10.34□□□□□ -0.75
TRIM54-203ENST00000485306 PLA2G2DQ9UNK4 145 aa10.34□□□□□ -0.75
TRIM54-203ENST00000485306 FAT3Q8TDW7 4589 aa10.33□□□□□ -0.76
TRIM54-203ENST00000485306 A0A1W2PNN7 141 aa10.32□□□□□ -0.76
TRIM54-203ENST00000485306 RPL24P83731 157 aaKnown RBP10.32□□□□□ -0.76
TRIM54-203ENST00000485306 DAND5Q8N907 189 aa10.32□□□□□ -0.76
TRIM54-203ENST00000485306 SRSF9Q13242 221 aaKnown RBP eCLIP10.31□□□□□ -0.76
TRIM54-203ENST00000485306 LINC00308Q8TCZ7 52 aa10.31□□□□□ -0.76
TRIM54-203ENST00000485306 SPINK6Q6UWN8 80 aa10.3□□□□□ -0.76
TRIM54-203ENST00000485306 TSTD3H0UI37 97 aa10.29□□□□□ -0.76
TRIM54-203ENST00000485306 TAL2Q16559 108 aa10.29□□□□□ -0.76
TRIM54-203ENST00000485306 C2orf91Q6ZV80 131 aa10.29□□□□□ -0.76
TRIM54-203ENST00000485306 TP73-AS1Q9UF72 201 aa10.29□□□□□ -0.76
TRIM54-203ENST00000485306 IGLV5-37A0A075B6J1 123 aa10.28□□□□□ -0.76
TRIM54-203ENST00000485306 NDUFC2O95298 119 aa10.28□□□□□ -0.76
TRIM54-203ENST00000485306 MT1HL1P0DM35 61 aa10.28□□□□□ -0.76
TRIM54-203ENST00000485306 REG3GQ6UW15 175 aa10.27□□□□□ -0.77
TRIM54-203ENST00000485306 SOSTDC1Q6X4U4 206 aa10.27□□□□□ -0.77
TRIM54-203ENST00000485306 HIST1H4GQ99525 98 aa10.27□□□□□ -0.77
TRIM54-203ENST00000485306 PRO1933Q9H354 126 aa10.27□□□□□ -0.77
TRIM54-203ENST00000485306 VPREB1P12018 145 aa10.26□□□□□ -0.77
TRIM54-203ENST00000485306 MUSTN1Q8IVN3 82 aa10.26□□□□□ -0.77
TRIM54-203ENST00000485306 LINC01600Q96MT4 127 aa10.26□□□□□ -0.77
TRIM54-203ENST00000485306 FAM168BA1KXE4 195 aa10.25□□□□□ -0.77
TRIM54-203ENST00000485306 NPC2P61916 151 aa10.25□□□□□ -0.77
TRIM54-203ENST00000485306 LBHQ53QV2 105 aaPredicted RBP10.25□□□□□ -0.77
TRIM54-203ENST00000485306 FAM19A5Q7Z5A7 132 aaPredicted RBP10.25□□□□□ -0.77
TRIM54-203ENST00000485306 NKAPP1Q8N9T2 125 aa10.25□□□□□ -0.77
TRIM54-203ENST00000485306 PHF5AQ7RTV0 110 aaKnown RBP10.24□□□□□ -0.77
TRIM54-203ENST00000485306 TRBV10-2A0A0K0K1G8 114 aa10.23□□□□□ -0.77
TRIM54-203ENST00000485306 M0QXV9 152 aa10.23□□□□□ -0.77
TRIM54-203ENST00000485306 HSD52Q0P140 79 aa10.23□□□□□ -0.77
TRIM54-203ENST00000485306 KRTAP7-1Q8IUC3 87 aa10.23□□□□□ -0.77
TRIM54-203ENST00000485306 PSORS1C2Q9UIG4 136 aa10.23□□□□□ -0.77
TRIM54-203ENST00000485306 C22orf24Q9Y442 160 aa10.23□□□□□ -0.77
TRIM54-203ENST00000485306 M0R378 163 aa10.22□□□□□ -0.77
TRIM54-203ENST00000485306 EIF4EBP3O60516 100 aaPredicted RBP10.22□□□□□ -0.77
TRIM54-203ENST00000485306 C1orf137Q5JT78 98 aa10.21□□□□□ -0.77
TRIM54-203ENST00000485306 MRPL55Q7Z7F7 128 aaKnown RBP10.21□□□□□ -0.77
TRIM54-203ENST00000485306 CEND1Q8N111 149 aa10.2□□□□□ -0.78
TRIM54-203ENST00000485306 Q8NDZ9 215 aa10.2□□□□□ -0.78
TRIM54-203ENST00000485306 TMEM238LA0A1B0GVL6 79 aa10.18□□□□□ -0.78
TRIM54-203ENST00000485306 A4D1N5 150 aa10.18□□□□□ -0.78
TRIM54-203ENST00000485306 NCR3O14931 201 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms