RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 KRTAP10-4P60372 401 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-204ENST00000469054 MEIG1Q5JSS6 88 aa7.46□□□□□ -1.22
VPS13D-204ENST00000469054 PHF5AQ7RTV0 110 aaKnown RBP7.46□□□□□ -1.22
VPS13D-204ENST00000469054 VPS13BQ7Z7G8 4022 aa7.46□□□□□ -1.22
VPS13D-204ENST00000469054 A0A0U1RRA0 63 aa7.45□□□□□ -1.22
VPS13D-204ENST00000469054 SERTAD4-AS1Q5TG53 156 aa7.45□□□□□ -1.22
VPS13D-204ENST00000469054 SND1-IT1Q9HBX3 110 aa7.45□□□□□ -1.22
VPS13D-204ENST00000469054 M0QXV9 152 aa7.44□□□□□ -1.22
VPS13D-204ENST00000469054 SMIM13P0DJ93 91 aa7.44□□□□□ -1.22
VPS13D-204ENST00000469054 PLA2G2DQ9UNK4 145 aa7.44□□□□□ -1.22
VPS13D-204ENST00000469054 C22orf24Q9Y442 160 aa7.44□□□□□ -1.22
VPS13D-204ENST00000469054 INAFM2P0DMQ5 153 aa7.43□□□□□ -1.22
VPS13D-204ENST00000469054 ATOH7Q8N100 152 aa7.43□□□□□ -1.22
VPS13D-204ENST00000469054 IGKV2D-26A0A0A0MRZ7 120 aa7.42□□□□□ -1.22
VPS13D-204ENST00000469054 TP73-AS1Q9UF72 201 aa7.42□□□□□ -1.22
VPS13D-204ENST00000469054 PRR3P79522 188 aaKnown RBP7.41□□□□□ -1.22
VPS13D-204ENST00000469054 LBHQ53QV2 105 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-204ENST00000469054 ANKRD39Q53RE8 183 aa7.41□□□□□ -1.22
VPS13D-204ENST00000469054 MIR7-3HGQ8N6C7 128 aa7.41□□□□□ -1.22
VPS13D-204ENST00000469054 ABCA13Q86UQ4 5058 aa7.41□□□□□ -1.22
VPS13D-204ENST00000469054 IGLV5-37A0A075B6J1 123 aa7.4□□□□□ -1.22
VPS13D-204ENST00000469054 A0A0J9YXY3 114 aa7.4□□□□□ -1.22
VPS13D-204ENST00000469054 UBE2BP63146 152 aa7.4□□□□□ -1.22
VPS13D-204ENST00000469054 MRPL55Q7Z7F7 128 aaKnown RBP7.4□□□□□ -1.22
VPS13D-204ENST00000469054 PSORS1C2Q9UIG4 136 aa7.4□□□□□ -1.22
VPS13D-204ENST00000469054 ZNF815PA8K554 130 aa7.39□□□□□ -1.23
VPS13D-204ENST00000469054 VPREB1P12018 145 aa7.39□□□□□ -1.23
VPS13D-204ENST00000469054 RPL24P83731 157 aaKnown RBP7.39□□□□□ -1.23
VPS13D-204ENST00000469054 KRTAP11-1Q8IUC1 163 aa7.39□□□□□ -1.23
VPS13D-204ENST00000469054 NKAPP1Q8N9T2 125 aa7.39□□□□□ -1.23
VPS13D-204ENST00000469054 TTTY13Q9BZ97 58 aa7.39□□□□□ -1.23
VPS13D-204ENST00000469054 SCGB1D1O95968 90 aa7.38□□□□□ -1.23
VPS13D-204ENST00000469054 HNRNPA3P51991 378 aaKnown RBP7.38□□□□□ -1.23
VPS13D-204ENST00000469054 DAND5Q8N907 189 aa7.38□□□□□ -1.23
VPS13D-204ENST00000469054 Q8NDZ9 215 aa7.38□□□□□ -1.23
VPS13D-204ENST00000469054 LINC00167Q96N53 147 aa7.38□□□□□ -1.23
VPS13D-204ENST00000469054 HSBP1L1C9JCN9 74 aa7.37□□□□□ -1.23
VPS13D-204ENST00000469054 C1orf137Q5JT78 98 aa7.37□□□□□ -1.23
VPS13D-204ENST00000469054 TMA7Q9Y2S6 64 aaKnown RBP7.37□□□□□ -1.23
VPS13D-204ENST00000469054 LOC107984156A0A0G2JMH3 177 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 LOC100996750A0A140TA64 210 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 GAGE10A6NGK3 116 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 ADAMTSL4-AS1Q5T5F5 129 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 ARL17AQ8IVW1 177 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 BOD1L2Q8IYS8 172 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 KRTAP4-6Q9BYQ5 205 aa7.36□□□□□ -1.23
VPS13D-204ENST00000469054 PCLOQ9Y6V0 5065 aa7.35□□□□□ -1.23
VPS13D-204ENST00000469054 RPL37AP8A6NKH3 93 aa7.35□□□□□ -1.23
VPS13D-204ENST00000469054 TIMM17BO60830 172 aa7.35□□□□□ -1.23
VPS13D-204ENST00000469054 PCP2Q8IVA1 136 aa7.35□□□□□ -1.23
VPS13D-204ENST00000469054 LITAFQ99732 161 aa7.35□□□□□ -1.23
VPS13D-204ENST00000469054 EIF4EBP3O60516 100 aaPredicted RBP7.34□□□□□ -1.23
VPS13D-204ENST00000469054 SCGB1D4Q6XE38 83 aa7.34□□□□□ -1.23
VPS13D-204ENST00000469054 MIEN1Q9BRT3 115 aa7.34□□□□□ -1.23
VPS13D-204ENST00000469054 M0R378 163 aa7.33□□□□□ -1.24
VPS13D-204ENST00000469054 IGLV7-43P04211 117 aa7.33□□□□□ -1.24
VPS13D-204ENST00000469054 SRSF9Q13242 221 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS13D-204ENST00000469054 IGLV1-50A0A075B6I6 118 aa7.32□□□□□ -1.24
VPS13D-204ENST00000469054 IGKV2-28A0A075B6P5 120 aa7.32□□□□□ -1.24
VPS13D-204ENST00000469054 IGKV2D-28P01615 120 aa7.32□□□□□ -1.24
VPS13D-204ENST00000469054 NPC2P61916 151 aa7.32□□□□□ -1.24
VPS13D-204ENST00000469054 JOSD1Q15040 202 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-204ENST00000469054 SPINK6Q6UWN8 80 aa7.32□□□□□ -1.24
VPS13D-204ENST00000469054 SOSTDC1Q6X4U4 206 aa7.32□□□□□ -1.24
VPS13D-204ENST00000469054 SRRM2Q9UQ35 2752 aaKnown RBP7.31□□□□□ -1.24
VPS13D-204ENST00000469054 LINC00308Q8TCZ7 52 aa7.31□□□□□ -1.24
VPS13D-204ENST00000469054 PKHD1L1Q86WI1 4243 aa7.3□□□□□ -1.24
VPS13D-204ENST00000469054 FLG2Q5D862 2391 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-204ENST00000469054 TMEM238C9JI98 176 aa7.3□□□□□ -1.24
VPS13D-204ENST00000469054 NCR3O14931 201 aa7.3□□□□□ -1.24
VPS13D-204ENST00000469054 NDUFC2O95298 119 aa7.3□□□□□ -1.24
VPS13D-204ENST00000469054 TRBV10-2A0A0K0K1G8 114 aa7.29□□□□□ -1.24
VPS13D-204ENST00000469054 BCE1O60756 84 aa7.29□□□□□ -1.24
VPS13D-204ENST00000469054 SPANXDQ9BXN6 97 aa7.29□□□□□ -1.24
VPS13D-204ENST00000469054 SPANXB1Q9NS25 103 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-204ENST00000469054 SPANXCQ9NY87 97 aa7.29□□□□□ -1.24
VPS13D-204ENST00000469054 ZNF861PO60384 105 aa7.28□□□□□ -1.24
VPS13D-204ENST00000469054 REG3GQ6UW15 175 aa7.28□□□□□ -1.24
VPS13D-204ENST00000469054 Q6ZVH6 145 aa7.28□□□□□ -1.24
VPS13D-204ENST00000469054 TRBV10-3A0A0K0K1G6 114 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 KRTAP29-1A8MX34 341 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-204ENST00000469054 OXTP01178 125 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 COX8AP10176 69 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 DIRC1Q969H9 104 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 TMEM126AQ9H061 195 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 PAM16Q9Y3D7 125 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 MYCBP2O75592 4640 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 FAT3Q8TDW7 4589 aa7.27□□□□□ -1.25
VPS13D-204ENST00000469054 LRP1Q07954 4544 aaKnown RBP7.26□□□□□ -1.25
VPS13D-204ENST00000469054 IFITM1P13164 125 aa7.26□□□□□ -1.25
VPS13D-204ENST00000469054 SPATA45Q537H7 98 aa7.26□□□□□ -1.25
VPS13D-204ENST00000469054 PYY3Q5JQD4 70 aa7.26□□□□□ -1.25
VPS13D-204ENST00000469054 COPS9Q8WXC6 57 aa7.26□□□□□ -1.25
VPS13D-204ENST00000469054 VAMP8Q9BV40 100 aa7.26□□□□□ -1.25
VPS13D-204ENST00000469054 KCNQ1DNQ9H478 68 aa7.26□□□□□ -1.25
VPS13D-204ENST00000469054 PRYO14603 147 aa7.25□□□□□ -1.25
VPS13D-204ENST00000469054 DLEU1O43261 78 aa7.25□□□□□ -1.25
VPS13D-204ENST00000469054 DDTP30046 118 aa7.25□□□□□ -1.25
VPS13D-204ENST00000469054 RPL28P46779 137 aaKnown RBP7.25□□□□□ -1.25
VPS13D-204ENST00000469054 UBE2AP49459 152 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 133.8 ms