RNA–Protein interactions for RNA: ENST00000468528.5

NXF3-204, Transcript of nuclear RNA export factor 3, human

TSL 5

Gene NXF3, Length 535 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF3-204	ENST00000468528	GAGE2D	Q9UEU5	116 aa		4.59	□□□□□ -1.67
NXF3-204	ENST00000468528		A0A096LNI7	61 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528		A0A0U1RRA0	63 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	NDUFC2	O95298	119 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	HNRNPA3	P51991	378 aa	Known RBP	4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	ADAMTSL4-AS1	Q5T5F5	129 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528		Q6ZSA8	131 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	LINC00308	Q8TCZ7	52 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	SPACA4	Q8TDM5	124 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	DPH3	Q96FX2	82 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	HIST1H4G	Q99525	98 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	DNAH2	Q9P225	4427 aa		4.58	□□□□□ -1.68
NXF3-204	ENST00000468528	IGKV2-24	A0A0C4DH68	120 aa		4.57	□□□□□ -1.68
NXF3-204	ENST00000468528	HSD52	Q0P140	79 aa		4.57	□□□□□ -1.68
NXF3-204	ENST00000468528	C2orf91	Q6ZV80	131 aa		4.57	□□□□□ -1.68
NXF3-204	ENST00000468528	XAGE1A	Q9HD64	81 aa		4.57	□□□□□ -1.68
NXF3-204	ENST00000468528	CBY1	Q9Y3M2	126 aa		4.57	□□□□□ -1.68
NXF3-204	ENST00000468528	IGLV5-37	A0A075B6J1	123 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	TRBV10-2	A0A0K0K1G8	114 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	EPM2A	B3EWF7	344 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	KRTAP10-1	P60331	282 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	LINC01620	Q4KN68	170 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	LBH	Q53QV2	105 aa	Predicted RBP	4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	C9orf129	Q5T035	196 aa	Known RBP	4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	DAND5	Q8N907	189 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	NKAPP1	Q8N9T2	125 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	PRO1933	Q9H354	126 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	PLAC8	Q9NZF1	115 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528	DNAH17	Q9UFH2	4485 aa		4.56	□□□□□ -1.68
NXF3-204	ENST00000468528		M0R143	59 aa		4.55	□□□□□ -1.68
NXF3-204	ENST00000468528	MUSTN1	Q8IVN3	82 aa		4.55	□□□□□ -1.68
NXF3-204	ENST00000468528	CEND1	Q8N111	149 aa		4.55	□□□□□ -1.68
NXF3-204	ENST00000468528	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.55	□□□□□ -1.68
NXF3-204	ENST00000468528	DNAH10	Q8IVF4	4471 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	RYR2	Q92736	4967 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528		A0A087WYN8	130 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528		M0R378	163 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	CHTF8	P0CG12	524 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	VPREB1	P12018	145 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	DDT	P30046	118 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	FUS	P35637	526 aa	Known RBP eCLIP	4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	SOSTDC1	Q6X4U4	206 aa		4.54	□□□□□ -1.68
NXF3-204	ENST00000468528	FAT2	Q9NYQ8	4349 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528	TRAV13-2	A0A0B4J235	113 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528		A4D1N5	150 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528		M0QXV9	152 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528	CDK2AP2	O75956	126 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528	MRPL55	Q7Z7F7	128 aa	Known RBP	4.53	□□□□□ -1.68
NXF3-204	ENST00000468528	CIRBP-AS1	Q8TBR5	109 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528	TMEM126A	Q9H061	195 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528	FRAS1	Q86XX4	4008 aa		4.53	□□□□□ -1.68
NXF3-204	ENST00000468528		A0A1W2PNN7	141 aa		4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	NPC2	P61916	151 aa		4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	SERTAD4-AS1	Q5TG53	156 aa		4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	SCX	Q7RTU7	201 aa		4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	C7orf33	Q8WU49	177 aa		4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	C22orf24	Q9Y442	160 aa		4.52	□□□□□ -1.69
NXF3-204	ENST00000468528	HYDIN	Q4G0P3	5121 aa		4.51	□□□□□ -1.69
NXF3-204	ENST00000468528		A0A0B4J2C4	111 aa		4.51	□□□□□ -1.69
NXF3-204	ENST00000468528	FAM168B	A1KXE4	195 aa		4.51	□□□□□ -1.69
NXF3-204	ENST00000468528	PANO1	I0J062	215 aa		4.51	□□□□□ -1.69
NXF3-204	ENST00000468528	CTAG1A	P78358	180 aa		4.51	□□□□□ -1.69
NXF3-204	ENST00000468528	S100A7L2	Q5SY68	101 aa		4.51	□□□□□ -1.69
NXF3-204	ENST00000468528	PKD1	P98161	4303 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	IGKV2-28	A0A075B6P5	120 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528		A6NDN8	102 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	TRIAP1	O43715	76 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	IGKV2D-28	P01615	120 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	IGLV6-57	P01721	117 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	KRTAP7-1	Q8IUC3	87 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	RAB37	Q96AX2	223 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	LINC00167	Q96N53	147 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	HECTD4	Q9Y4D8	3996 aa		4.5	□□□□□ -1.69
NXF3-204	ENST00000468528	RYR3	Q15413	4870 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	IGLV1-50	A0A075B6I6	118 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528		A0A1B0GWB2	263 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	PRY	O14603	147 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	NCR3	O14931	201 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	FXYD2	P54710	66 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	UBE2B	P63146	152 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	BVES-AS1	Q5T3Y7	98 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	OR13C6P	Q8NH95	151 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	KCNQ1DN	Q9H478	68 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	PRO1854	Q9UHT4	67 aa		4.49	□□□□□ -1.69
NXF3-204	ENST00000468528	TRBV10-3	A0A0K0K1G6	114 aa		4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	PLA2G1B	P04054	148 aa	Known RBP	4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	CFC1B	P0CG36	223 aa		4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	CFC1	P0CG37	223 aa		4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	LOR	P23490	312 aa	Predicted RBP	4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	HINT1	P49773	126 aa	Predicted RBP	4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	XG	P55808	180 aa		4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	PRR3	P79522	188 aa	Known RBP	4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	PHF5A	Q7RTV0	110 aa	Known RBP	4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	LINC00337	Q8N6G1	96 aa		4.48	□□□□□ -1.69
NXF3-204	ENST00000468528		Q8NDZ9	215 aa		4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	NHP2	Q9NX24	153 aa	Known RBP	4.48	□□□□□ -1.69
NXF3-204	ENST00000468528	PKHD1	P08F94	4074 aa		4.47	□□□□□ -1.69
NXF3-204	ENST00000468528	TRAV23DV6	A0A075B6W5	121 aa		4.47	□□□□□ -1.69
NXF3-204	ENST00000468528	TRBV7-6	A0A0J9YX20	115 aa		4.47	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms