RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 FAM25AB3EWG3 89 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 FAM25CB3EWG5 89 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 FAM25GB3EWG6 89 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 H3BQ85 93 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 K7ERJ3 54 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 RNASE4P34096 147 aaKnown RBP2.25□□□□□ -2.05
HMGB1-207ENST00000468384 SNCAP37840 140 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 TMBIM6P55061 237 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 HIST1H4AP62805 103 aaKnown RBP2.25□□□□□ -2.05
HMGB1-207ENST00000468384 RBM3P98179 157 aaKnown RBP2.25□□□□□ -2.05
HMGB1-207ENST00000468384 TMEM14EPQ6UXP3 125 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 C2orf91Q6ZV80 131 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 LINC00305Q7Z4B0 112 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 HIST3H2BBQ8N257 126 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 Q8NDZ9 215 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 BRK1Q8WUW1 75 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 TCEAL7Q9BRU2 100 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 MND1Q9BWT6 205 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 XAGE1AQ9HD64 81 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 OSTCQ9NRP0 149 aa2.25□□□□□ -2.05
HMGB1-207ENST00000468384 CST7O76096 145 aa2.24□□□□□ -2.05
HMGB1-207ENST00000468384 SPINK1P00995 79 aa2.24□□□□□ -2.05
HMGB1-207ENST00000468384 MGST1P10620 155 aaKnown RBP2.24□□□□□ -2.05
HMGB1-207ENST00000468384 RPL28P46779 137 aaKnown RBP2.24□□□□□ -2.05
HMGB1-207ENST00000468384 PPP3R1P63098 170 aa2.24□□□□□ -2.05
HMGB1-207ENST00000468384 MIR17HGQ75NE6 70 aa2.24□□□□□ -2.05
HMGB1-207ENST00000468384 C14orf144Q96I85 54 aa2.24□□□□□ -2.05
HMGB1-207ENST00000468384 HIST1H2BLQ99880 126 aa2.24□□□□□ -2.05
HMGB1-207ENST00000468384 NAA38Q9BRA0 125 aaKnown RBP2.24□□□□□ -2.05
HMGB1-207ENST00000468384 IGHV1-58A0A0C4DH39 117 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 TRBV7-6A0A0J9YX20 115 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 GRIFINA4D1Z8 144 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 COLCA2A8K830 154 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 H3BT86 120 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 J3QR89 54 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 M0R2P5 195 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 NPYP01303 97 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 IGLC6P0CF74 106 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 SMIM6P0DI80 62 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 NDUFA6P56556 154 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 HBBP68871 147 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 AKR1C1Q04828 323 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 CFAP126Q5VTH2 177 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 AMMECR1LQ6DCA0 310 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 LYZL2Q7Z4W2 148 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 C1orf64Q8NEQ6 169 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 SMCR5Q8TEV8 140 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 LINC00526Q96FQ7 95 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 IMMP2LQ96T52 175 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 SMDT1Q9H4I9 107 aa2.23□□□□□ -2.05
HMGB1-207ENST00000468384 RBAKDNA6NC62 111 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 F6UZH7 168 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 FXYD1O00168 92 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 OCIAD2Q56VL3 154 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 SOSTDC1Q6X4U4 206 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 SCGB3A1Q96QR1 104 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 MIEN1Q9BRT3 115 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 NPCDR1Q9BY65 106 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 EPDR1Q9UM22 224 aa2.22□□□□□ -2.05
HMGB1-207ENST00000468384 TRAV13-1A0A0B4J241 112 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 H3BMG7 143 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 GPX1P07203 203 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 RPL35P42766 123 aaKnown RBP2.21□□□□□ -2.06
HMGB1-207ENST00000468384 XCL1P47992 114 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 MOBPQ13875 183 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 RNASE10Q5GAN6 216 aaKnown RBP2.21□□□□□ -2.06
HMGB1-207ENST00000468384 Q5VV11 94 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 ZNF471Q9BX82 626 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-207ENST00000468384 NIT2Q9NQR4 276 aa2.21□□□□□ -2.06
HMGB1-207ENST00000468384 IGLV4-60A0A075B6I1 120 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 FAM236AA0A1B0GUQ0 79 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 LOC100130705A0A1B0GUX0 176 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 FAM236BA0A1B0GV22 79 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 HIST1H2BKO60814 126 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 TCRAP04437 139 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 CD2P06729 351 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 HIST1H2BJP06899 126 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 METTL15P1P0C7V9 234 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 SLC25A4P12235 298 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 NFYAP23511 347 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-207ENST00000468384 LGALSLQ3ZCW2 172 aaPredicted RBP2.2□□□□□ -2.06
HMGB1-207ENST00000468384 HSD17B12Q53GQ0 312 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 LINC00167Q96N53 147 aa2.2□□□□□ -2.06
HMGB1-207ENST00000468384 TRBV6-8A0A0A6YYG3 113 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 TRBV27A0A0K0K1C4 114 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 NUPR1O60356 82 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 ZNF22P17026 224 aaPredicted RBP2.19□□□□□ -2.06
HMGB1-207ENST00000468384 PKIAP61925 76 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 KHDC3LQ587J8 217 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 OR5H6Q8NGV6 325 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 OR5AK2Q8NH90 309 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 PDCD10Q9BUL8 212 aa2.19□□□□□ -2.06
HMGB1-207ENST00000468384 SYNE1Q8NF91 8797 aaKnown RBP2.18□□□□□ -2.06
HMGB1-207ENST00000468384 ZNF727A8MUV8 499 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 SNRPGP15A8MWD9 76 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 FOXA3P55318 350 aaPredicted RBP2.18□□□□□ -2.06
HMGB1-207ENST00000468384 CATR1Q13166 79 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 LCE3EQ5T5B0 92 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 PRR9Q5T870 116 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 C7orf65Q6ZTY9 151 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms