RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 ESM1Q9NQ30 184 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 C1orf195Q5TG92 126 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 A0A096LNT2 108 aa4.85□□□□□ -1.63
SYNE1-216ENST00000461872 VPREB1P12018 145 aa4.84□□□□□ -1.63
SYNE1-216ENST00000461872 XAGE1AQ9HD64 81 aa4.84□□□□□ -1.63
SYNE1-216ENST00000461872 FAM19A1Q7Z5A9 133 aa4.84□□□□□ -1.63
SYNE1-216ENST00000461872 ITPR3Q14573 2671 aa4.84□□□□□ -1.63
SYNE1-216ENST00000461872 WFDC10BQ8IUB3 73 aa4.84□□□□□ -1.63
SYNE1-216ENST00000461872 HRCT1Q6UXD1 115 aa4.84□□□□□ -1.63
SYNE1-216ENST00000461872 Q8NBF4 154 aa4.84□□□□□ -1.64
SYNE1-216ENST00000461872 FAM30AQ9NZY2 134 aa4.83□□□□□ -1.64
SYNE1-216ENST00000461872 PLA2G2DQ9UNK4 145 aa4.83□□□□□ -1.64
SYNE1-216ENST00000461872 GCN1Q92616 2671 aaKnown RBP4.83□□□□□ -1.64
SYNE1-216ENST00000461872 C18orf65Q6ZTR6 163 aa4.83□□□□□ -1.64
SYNE1-216ENST00000461872 DEFB131BA0A096LNP1 70 aa4.83□□□□□ -1.64
SYNE1-216ENST00000461872 RPL37AP61513 92 aaKnown RBP4.82□□□□□ -1.64
SYNE1-216ENST00000461872 SNURFQ9Y675 71 aa4.82□□□□□ -1.64
SYNE1-216ENST00000461872 ATRQ13535 2644 aa4.82□□□□□ -1.64
SYNE1-216ENST00000461872 PLAC8L1A1L4L8 177 aa4.82□□□□□ -1.64
SYNE1-216ENST00000461872 Q6ZRX8 168 aa4.82□□□□□ -1.64
SYNE1-216ENST00000461872 FAM104AQ969W3 186 aa4.82□□□□□ -1.64
SYNE1-216ENST00000461872 REG3GQ6UW15 175 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 Q8N9L7 120 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 KCNQ1DNQ9H478 68 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 X6R8D5 127 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 RETNQ9HD89 108 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 KIAA0087Q14695 138 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 ZNF843Q8N446 348 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 LINC00528Q8N1L1 170 aa4.81□□□□□ -1.64
SYNE1-216ENST00000461872 SPINK6Q6UWN8 80 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 DEFB4AO15263 64 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 PLA2G2AP14555 144 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 C3orf84H3BNL1 204 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 H7BZZ5 65 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 TLX1NBP0CAT3 122 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 A0A0C4DFX4 3053 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 C10orf25Q5T742 122 aa4.8□□□□□ -1.64
SYNE1-216ENST00000461872 CYP4F30PQ9H0H9 118 aa4.79□□□□□ -1.64
SYNE1-216ENST00000461872 C6orf48Q9UBA6 75 aa4.79□□□□□ -1.64
SYNE1-216ENST00000461872 FLG2Q5D862 2391 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-216ENST00000461872 SCXQ7RTU7 201 aa4.78□□□□□ -1.64
SYNE1-216ENST00000461872 C7orf33Q8WU49 177 aa4.78□□□□□ -1.64
SYNE1-216ENST00000461872 CHD6Q8TD26 2715 aa4.78□□□□□ -1.64
SYNE1-216ENST00000461872 SPANXA2-OT1Q8N9U9 137 aa4.78□□□□□ -1.64
SYNE1-216ENST00000461872 PRM2P04554 102 aa4.78□□□□□ -1.64
SYNE1-216ENST00000461872 WFDC10AQ9H1F0 79 aa4.77□□□□□ -1.65
SYNE1-216ENST00000461872 FLNCQ14315 2725 aa4.77□□□□□ -1.65
SYNE1-216ENST00000461872 C9orf116Q5BN46 136 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-216ENST00000461872 C19orf73Q9NVV2 129 aa4.77□□□□□ -1.65
SYNE1-216ENST00000461872 CFAP46Q8IYW2 2715 aa4.77□□□□□ -1.65
SYNE1-216ENST00000461872 IGLV5-48A0A075B6I7 105 aa4.77□□□□□ -1.65
SYNE1-216ENST00000461872 HELZ2Q9BYK8 2649 aaKnown RBP4.76□□□□□ -1.65
SYNE1-216ENST00000461872 GIG44P09565 113 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-216ENST00000461872 Q8NAQ8 132 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 IGLV5-37A0A075B6J1 123 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 PRR3P79522 188 aaKnown RBP4.76□□□□□ -1.65
SYNE1-216ENST00000461872 MOBPQ13875 183 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 PCNTO95613 3336 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 DNAH10OSP0CZ25 163 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 CR1P17927 2039 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 LINC00208Q96KT6 92 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 Q9UF83 564 aa4.76□□□□□ -1.65
SYNE1-216ENST00000461872 KMT2BQ9UMN6 2715 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-216ENST00000461872 Q6ZRP5 223 aa4.75□□□□□ -1.65
SYNE1-216ENST00000461872 WFDC13Q8IUB5 93 aa4.75□□□□□ -1.65
SYNE1-216ENST00000461872 MAST4O15021 2626 aa4.75□□□□□ -1.65
SYNE1-216ENST00000461872 IGSF10Q6WRI0 2623 aa4.74□□□□□ -1.65
SYNE1-216ENST00000461872 PLA2G1BP04054 148 aaKnown RBP4.74□□□□□ -1.65
SYNE1-216ENST00000461872 Q6ZRU5 148 aa4.74□□□□□ -1.65
SYNE1-216ENST00000461872 PMAIP1Q13794 54 aa4.74□□□□□ -1.65
SYNE1-216ENST00000461872 DSPP15924 2871 aaKnown RBP4.73□□□□□ -1.65
SYNE1-216ENST00000461872 UNC79Q9P2D8 2635 aa4.73□□□□□ -1.65
SYNE1-216ENST00000461872 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-216ENST00000461872 TM2D3Q9BRN9 247 aa4.72□□□□□ -1.65
SYNE1-216ENST00000461872 USP24Q9UPU5 2620 aa4.71□□□□□ -1.65
SYNE1-216ENST00000461872 H0Y9P7 68 aa4.71□□□□□ -1.66
SYNE1-216ENST00000461872 TRAV22A0A0B4J277 110 aa4.71□□□□□ -1.66
SYNE1-216ENST00000461872 SETXQ7Z333 2677 aaKnown RBP4.71□□□□□ -1.66
SYNE1-216ENST00000461872 Q1T7F1 81 aa4.71□□□□□ -1.66
SYNE1-216ENST00000461872 SPRR4Q96PI1 79 aa4.71□□□□□ -1.66
SYNE1-216ENST00000461872 Q9BRP9 147 aa4.71□□□□□ -1.66
SYNE1-216ENST00000461872 NANOS2P60321 138 aaKnown RBP4.71□□□□□ -1.66
SYNE1-216ENST00000461872 FLNBO75369 2602 aaKnown RBP4.7□□□□□ -1.66
SYNE1-216ENST00000461872 OCR1Q9BZK8 76 aa4.7□□□□□ -1.66
SYNE1-216ENST00000461872 C16orf90A8MZG2 172 aa4.7□□□□□ -1.66
SYNE1-216ENST00000461872 NUPR2A6NF83 97 aa4.7□□□□□ -1.66
SYNE1-216ENST00000461872 C4orf26Q17RF5 130 aa4.7□□□□□ -1.66
SYNE1-216ENST00000461872 SPINK1P00995 79 aa4.7□□□□□ -1.66
SYNE1-216ENST00000461872 IGLV9-49A0A0B4J1Y8 123 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 SMIM29Q86T20 159 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 PRR15Q8IV56 129 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 A8MWP4 228 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 LOC101927531A0A1B0GV80 90 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 C22orf24Q9Y442 160 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 C5orf42Q9H799 3197 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 AKAP13Q12802 2813 aa4.69□□□□□ -1.66
SYNE1-216ENST00000461872 RANBP2P49792 3224 aaKnown RBP4.68□□□□□ -1.66
SYNE1-216ENST00000461872 A0A087WSZ3 146 aa4.68□□□□□ -1.66
SYNE1-216ENST00000461872 Q6ZTC4 211 aa4.68□□□□□ -1.66
SYNE1-216ENST00000461872 IGLV1-50A0A075B6I6 118 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms