RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 DMBT1Q9UGM3 2413 aaPredicted RBP10.17□□□□□ -0.78
SF3A1-204ENST00000447376 MEIG1Q5JSS6 88 aa10.17□□□□□ -0.78
SF3A1-204ENST00000447376 LBHQ53QV2 105 aaPredicted RBP10.16□□□□□ -0.78
SF3A1-204ENST00000447376 C1orf137Q5JT78 98 aa10.16□□□□□ -0.78
SF3A1-204ENST00000447376 SPINK6Q6UWN8 80 aa10.16□□□□□ -0.78
SF3A1-204ENST00000447376 PSORS1C2Q9UIG4 136 aa10.16□□□□□ -0.78
SF3A1-204ENST00000447376 C5orf52A6NGY3 159 aa10.15□□□□□ -0.78
SF3A1-204ENST00000447376 TSPEAR-AS2P59090 65 aa10.14□□□□□ -0.79
SF3A1-204ENST00000447376 REG3GQ6UW15 175 aa10.14□□□□□ -0.79
SF3A1-204ENST00000447376 PLA2G2DQ9UNK4 145 aa10.14□□□□□ -0.79
SF3A1-204ENST00000447376 SND1-IT1Q9HBX3 110 aa10.13□□□□□ -0.79
SF3A1-204ENST00000447376 A0A0U1RRA0 63 aa10.12□□□□□ -0.79
SF3A1-204ENST00000447376 SMIM13P0DJ93 91 aa10.12□□□□□ -0.79
SF3A1-204ENST00000447376 NKAPP1Q8N9T2 125 aa10.12□□□□□ -0.79
SF3A1-204ENST00000447376 TP73-AS1Q9UF72 201 aa10.12□□□□□ -0.79
SF3A1-204ENST00000447376 C22orf24Q9Y442 160 aa10.12□□□□□ -0.79
SF3A1-204ENST00000447376 PKHD1L1Q86WI1 4243 aa10.12□□□□□ -0.79
SF3A1-204ENST00000447376 RPL24P83731 157 aaKnown RBP10.11□□□□□ -0.79
SF3A1-204ENST00000447376 SERTAD4-AS1Q5TG53 156 aa10.11□□□□□ -0.79
SF3A1-204ENST00000447376 MRPL55Q7Z7F7 128 aaKnown RBP10.1□□□□□ -0.79
SF3A1-204ENST00000447376 KRTAP7-1Q8IUC3 87 aa10.09□□□□□ -0.79
SF3A1-204ENST00000447376 ATOH7Q8N100 152 aa10.09□□□□□ -0.79
SF3A1-204ENST00000447376 MIR7-3HGQ8N6C7 128 aa10.09□□□□□ -0.79
SF3A1-204ENST00000447376 HSBP1L1C9JCN9 74 aa10.08□□□□□ -0.8
SF3A1-204ENST00000447376 IGLV7-43P04211 117 aa10.08□□□□□ -0.8
SF3A1-204ENST00000447376 IGLV5-37A0A075B6J1 123 aa10.07□□□□□ -0.8
SF3A1-204ENST00000447376 ZNF815PA8K554 130 aa10.07□□□□□ -0.8
SF3A1-204ENST00000447376 SCGB1D1O95968 90 aa10.07□□□□□ -0.8
SF3A1-204ENST00000447376 SRSF9Q13242 221 aaKnown RBP eCLIP10.07□□□□□ -0.8
SF3A1-204ENST00000447376 DIRC1Q969H9 104 aa10.07□□□□□ -0.8
SF3A1-204ENST00000447376 A0A0J9YXY3 114 aa10.06□□□□□ -0.8
SF3A1-204ENST00000447376 MIEN1Q9BRT3 115 aa10.06□□□□□ -0.8
SF3A1-204ENST00000447376 IGKV2D-26A0A0A0MRZ7 120 aa10.05□□□□□ -0.8
SF3A1-204ENST00000447376 ANKRD39Q53RE8 183 aa10.04□□□□□ -0.8
SF3A1-204ENST00000447376 BOD1L2Q8IYS8 172 aa10.04□□□□□ -0.8
SF3A1-204ENST00000447376 GAGE10A6NGK3 116 aa10.03□□□□□ -0.8
SF3A1-204ENST00000447376 VPREB1P12018 145 aa10.03□□□□□ -0.8
SF3A1-204ENST00000447376 LINC00167Q96N53 147 aa10.03□□□□□ -0.8
SF3A1-204ENST00000447376 TMA7Q9Y2S6 64 aaKnown RBP10.03□□□□□ -0.8
SF3A1-204ENST00000447376 TIMM17BO60830 172 aa10.02□□□□□ -0.81
SF3A1-204ENST00000447376 SCGB1D4Q6XE38 83 aa10.02□□□□□ -0.81
SF3A1-204ENST00000447376 KRTAP11-1Q8IUC1 163 aa10.02□□□□□ -0.81
SF3A1-204ENST00000447376 LINC01600Q96MT4 127 aa10.02□□□□□ -0.81
SF3A1-204ENST00000447376 RPL37AP8A6NKH3 93 aa10.01□□□□□ -0.81
SF3A1-204ENST00000447376 DAND5Q8N907 189 aa10.01□□□□□ -0.81
SF3A1-204ENST00000447376 FAT3Q8TDW7 4589 aa10□□□□□ -0.81
SF3A1-204ENST00000447376 LOC107984156A0A0G2JMH3 177 aa10□□□□□ -0.81
SF3A1-204ENST00000447376 H0Y9J4 135 aa10□□□□□ -0.81
SF3A1-204ENST00000447376 M0R378 163 aa10□□□□□ -0.81
SF3A1-204ENST00000447376 ARL17AQ8IVW1 177 aa10□□□□□ -0.81
SF3A1-204ENST00000447376 LRP1Q07954 4544 aaKnown RBP10□□□□□ -0.81
SF3A1-204ENST00000447376 HERC1Q15751 4861 aa9.99□□□□□ -0.81
SF3A1-204ENST00000447376 RPL28P46779 137 aaKnown RBP9.99□□□□□ -0.81
SF3A1-204ENST00000447376 TTTY13Q9BZ97 58 aa9.99□□□□□ -0.81
SF3A1-204ENST00000447376 IGKV2-28A0A075B6P5 120 aa9.98□□□□□ -0.81
SF3A1-204ENST00000447376 TMEM238C9JI98 176 aa9.98□□□□□ -0.81
SF3A1-204ENST00000447376 ZNF861PO60384 105 aa9.98□□□□□ -0.81
SF3A1-204ENST00000447376 BCE1O60756 84 aa9.98□□□□□ -0.81
SF3A1-204ENST00000447376 IGKV2D-28P01615 120 aa9.98□□□□□ -0.81
SF3A1-204ENST00000447376 ADAMTSL4-AS1Q5T5F5 129 aa9.98□□□□□ -0.81
SF3A1-204ENST00000447376 UBE2AP49459 152 aa9.97□□□□□ -0.81
SF3A1-204ENST00000447376 PCP2Q8IVA1 136 aa9.97□□□□□ -0.81
SF3A1-204ENST00000447376 COPS9Q8WXC6 57 aa9.97□□□□□ -0.81
SF3A1-204ENST00000447376 IGLV1-50A0A075B6I6 118 aa9.96□□□□□ -0.82
SF3A1-204ENST00000447376 NDUFC2O95298 119 aa9.96□□□□□ -0.82
SF3A1-204ENST00000447376 S100A12P80511 92 aa9.96□□□□□ -0.82
SF3A1-204ENST00000447376 Q8NDZ9 215 aa9.96□□□□□ -0.82
SF3A1-204ENST00000447376 NCR3O14931 201 aa9.95□□□□□ -0.82
SF3A1-204ENST00000447376 MT1HL1P0DM35 61 aa9.95□□□□□ -0.82
SF3A1-204ENST00000447376 NPC2P61916 151 aa9.95□□□□□ -0.82
SF3A1-204ENST00000447376 JOSD1Q15040 202 aaPredicted RBP9.95□□□□□ -0.82
SF3A1-204ENST00000447376 LITAFQ99732 161 aa9.95□□□□□ -0.82
SF3A1-204ENST00000447376 TRBV10-2A0A0K0K1G8 114 aa9.94□□□□□ -0.82
SF3A1-204ENST00000447376 Q6ZVH6 145 aa9.94□□□□□ -0.82
SF3A1-204ENST00000447376 SPANXB1Q9NS25 103 aaPredicted RBP9.94□□□□□ -0.82
SF3A1-204ENST00000447376 LINC00308Q8TCZ7 52 aa9.93□□□□□ -0.82
SF3A1-204ENST00000447376 SPANXDQ9BXN6 97 aa9.93□□□□□ -0.82
SF3A1-204ENST00000447376 SPANXCQ9NY87 97 aa9.93□□□□□ -0.82
SF3A1-204ENST00000447376 VAMP8Q9BV40 100 aa9.92□□□□□ -0.82
SF3A1-204ENST00000447376 IFITM1P13164 125 aa9.91□□□□□ -0.82
SF3A1-204ENST00000447376 S100A7L2Q5SY68 101 aa9.91□□□□□ -0.82
SF3A1-204ENST00000447376 SOSTDC1Q6X4U4 206 aa9.91□□□□□ -0.82
SF3A1-204ENST00000447376 FAM19A1Q7Z5A9 133 aa9.9□□□□□ -0.82
SF3A1-204ENST00000447376 TMEM126AQ9H061 195 aa9.9□□□□□ -0.82
SF3A1-204ENST00000447376 PRYO14603 147 aa9.89□□□□□ -0.83
SF3A1-204ENST00000447376 DDTP30046 118 aa9.89□□□□□ -0.83
SF3A1-204ENST00000447376 RPL13AP40429 203 aaKnown RBP9.89□□□□□ -0.83
SF3A1-204ENST00000447376 KRTAP10-8P60410 259 aa9.89□□□□□ -0.83
SF3A1-204ENST00000447376 PAM16Q9Y3D7 125 aa9.89□□□□□ -0.83
SF3A1-204ENST00000447376 CBY1Q9Y3M2 126 aa9.89□□□□□ -0.83
SF3A1-204ENST00000447376 TRBV10-3A0A0K0K1G6 114 aa9.88□□□□□ -0.83
SF3A1-204ENST00000447376 COX8AP10176 69 aa9.88□□□□□ -0.83
SF3A1-204ENST00000447376 SPATA45Q537H7 98 aa9.88□□□□□ -0.83
SF3A1-204ENST00000447376 LINC00518Q8N0U6 118 aa9.88□□□□□ -0.83
SF3A1-204ENST00000447376 PPDPFQ9H3Y8 114 aa9.88□□□□□ -0.83
SF3A1-204ENST00000447376 EIF4EBP3O60516 100 aaPredicted RBP9.87□□□□□ -0.83
SF3A1-204ENST00000447376 KCNQ1DNQ9H478 68 aa9.87□□□□□ -0.83
SF3A1-204ENST00000447376 DLEU1O43261 78 aa9.86□□□□□ -0.83
SF3A1-204ENST00000447376 PRR26Q8N8Z3 221 aa9.86□□□□□ -0.83
SF3A1-204ENST00000447376 IGLV6-57P01721 117 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms