RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SPART-AS1P0CW21 52 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 A0A0J9YWU9 116 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 USP17L23D6RBM5 183 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 DEFB4AO15263 64 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 IGHV4-30-4P0DP06 118 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 SPAG11BQ08648 103 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 Q8NAQ8 132 aa7.69□□□□□ -1.18
USP4-205ENST00000431357 IGKV3D-7A0A0C4DH55 119 aa7.68□□□□□ -1.18
USP4-205ENST00000431357 C9orf116Q5BN46 136 aaPredicted RBP7.68□□□□□ -1.18
USP4-205ENST00000431357 ATP5EP2Q5VTU8 51 aa7.68□□□□□ -1.18
USP4-205ENST00000431357 SMR3AQ99954 134 aa7.68□□□□□ -1.18
USP4-205ENST00000431357 PDZD2O15018 2839 aa7.68□□□□□ -1.18
USP4-205ENST00000431357 C6orf99Q4VX62 202 aa7.67□□□□□ -1.18
USP4-205ENST00000431357 LINC00575Q6W349 94 aa7.67□□□□□ -1.18
USP4-205ENST00000431357 Q8N3U1 123 aa7.67□□□□□ -1.18
USP4-205ENST00000431357 H3BQ85 93 aa7.67□□□□□ -1.18
USP4-205ENST00000431357 PRR34Q9NV39 138 aa7.67□□□□□ -1.18
USP4-205ENST00000431357 GVQW2A0A096LPI5 108 aaPredicted RBP7.66□□□□□ -1.18
USP4-205ENST00000431357 LAMTOR3Q9UHA4 124 aa7.66□□□□□ -1.18
USP4-205ENST00000431357 CELA1Q9UNI1 258 aa7.66□□□□□ -1.18
USP4-205ENST00000431357 SETD2Q9BYW2 2564 aaPredicted RBP7.66□□□□□ -1.18
USP4-205ENST00000431357 NBPF19A0A087WUL8 3843 aa7.66□□□□□ -1.18
USP4-205ENST00000431357 CUBNO60494 3623 aa7.66□□□□□ -1.18
USP4-205ENST00000431357 UNQ6190/PRO20217Q6UXQ8 127 aa7.66□□□□□ -1.18
USP4-205ENST00000431357 SPATA3Q8NHX4 192 aa7.65□□□□□ -1.18
USP4-205ENST00000431357 ACANP16112 2415 aa7.65□□□□□ -1.19
USP4-205ENST00000431357 CYSRT1A8MQ03 144 aa7.64□□□□□ -1.19
USP4-205ENST00000431357 IGLV6-57P01721 117 aa7.64□□□□□ -1.19
USP4-205ENST00000431357 ATP5EP56381 51 aaPredicted RBP7.64□□□□□ -1.19
USP4-205ENST00000431357 C10orf25Q5T742 122 aa7.64□□□□□ -1.19
USP4-205ENST00000431357 Q8NDZ9 215 aa7.64□□□□□ -1.19
USP4-205ENST00000431357 LYPD5Q6UWN5 251 aa7.64□□□□□ -1.19
USP4-205ENST00000431357 C6orf223Q8N319 242 aa7.64□□□□□ -1.19
USP4-205ENST00000431357 TRBV10-3A0A0K0K1G6 114 aa7.63□□□□□ -1.19
USP4-205ENST00000431357 ZNF561-AS1K7EIQ3 104 aa7.63□□□□□ -1.19
USP4-205ENST00000431357 KLK12Q9UKR0 248 aa7.63□□□□□ -1.19
USP4-205ENST00000431357 MTORP42345 2549 aa7.63□□□□□ -1.19
USP4-205ENST00000431357 HTN3P15516 51 aa7.63□□□□□ -1.19
USP4-205ENST00000431357 UBL5Q9BZL1 73 aa7.63□□□□□ -1.19
USP4-205ENST00000431357 HIVEP2P31629 2446 aa7.62□□□□□ -1.19
USP4-205ENST00000431357 NIPBLQ6KC79 2804 aaeCLIP7.62□□□□□ -1.19
USP4-205ENST00000431357 LOC110117498A0A087WWA1 95 aa7.62□□□□□ -1.19
USP4-205ENST00000431357 RBM3P98179 157 aaKnown RBP7.62□□□□□ -1.19
USP4-205ENST00000431357 ENHOQ6UWT2 76 aa7.62□□□□□ -1.19
USP4-205ENST00000431357 FN1P02751 2386 aaKnown RBP7.61□□□□□ -1.19
USP4-205ENST00000431357 GHRHP01286 108 aa7.61□□□□□ -1.19
USP4-205ENST00000431357 PDE6GP18545 87 aa7.61□□□□□ -1.19
USP4-205ENST00000431357 WFDC9Q8NEX5 89 aa7.61□□□□□ -1.19
USP4-205ENST00000431357 A0A087WVE0 104 aa7.6□□□□□ -1.19
USP4-205ENST00000431357 NDUFC1O43677 76 aa7.6□□□□□ -1.19
USP4-205ENST00000431357 Q6ZQT0 140 aa7.6□□□□□ -1.19
USP4-205ENST00000431357 INAFM1C9JVW0 142 aa7.59□□□□□ -1.19
USP4-205ENST00000431357 H3BNG1 76 aa7.59□□□□□ -1.19
USP4-205ENST00000431357 FP248Q71RG6 208 aaPredicted RBP7.59□□□□□ -1.19
USP4-205ENST00000431357 BRK1Q8WUW1 75 aa7.59□□□□□ -1.19
USP4-205ENST00000431357 DIRC1Q969H9 104 aa7.59□□□□□ -1.19
USP4-205ENST00000431357 C6orf48Q9UBA6 75 aa7.59□□□□□ -1.19
USP4-205ENST00000431357 TRAV23DV6A0A075B6W5 121 aa7.58□□□□□ -1.2
USP4-205ENST00000431357 KLKP1Q107X0 134 aa7.58□□□□□ -1.2
USP4-205ENST00000431357 TRBV7-6A0A0J9YX20 115 aa7.58□□□□□ -1.2
USP4-205ENST00000431357 H7BZZ5 65 aa7.58□□□□□ -1.2
USP4-205ENST00000431357 PMAIP1Q13794 54 aa7.58□□□□□ -1.2
USP4-205ENST00000431357 TENM4Q6N022 2769 aa7.57□□□□□ -1.2
USP4-205ENST00000431357 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.57□□□□□ -1.2
USP4-205ENST00000431357 FAM19A1Q7Z5A9 133 aa7.57□□□□□ -1.2
USP4-205ENST00000431357 Q6ZQY7 126 aa7.56□□□□□ -1.2
USP4-205ENST00000431357 COX7BP24311 80 aa7.55□□□□□ -1.2
USP4-205ENST00000431357 CD164Q04900 197 aa7.55□□□□□ -1.2
USP4-205ENST00000431357 EGFEM1PQ0D2K5 195 aa7.55□□□□□ -1.2
USP4-205ENST00000431357 TRAV7A0A075B6U4 112 aa7.55□□□□□ -1.2
USP4-205ENST00000431357 ZNF73O43830 326 aaPredicted RBP7.55□□□□□ -1.2
USP4-205ENST00000431357 C20orf197Q8N268 126 aa7.55□□□□□ -1.2
USP4-205ENST00000431357 CAMK2N2Q96S95 79 aa7.55□□□□□ -1.2
USP4-205ENST00000431357 PRR15Q8IV56 129 aa7.54□□□□□ -1.2
USP4-205ENST00000431357 XAGE1AQ9HD64 81 aa7.54□□□□□ -1.2
USP4-205ENST00000431357 GCN1Q92616 2671 aaKnown RBP7.54□□□□□ -1.2
USP4-205ENST00000431357 M0R378 163 aa7.54□□□□□ -1.2
USP4-205ENST00000431357 ELOF1P60002 83 aaKnown RBP7.54□□□□□ -1.2
USP4-205ENST00000431357 Q6ZRU5 148 aa7.54□□□□□ -1.2
USP4-205ENST00000431357 VPREB1P12018 145 aa7.53□□□□□ -1.2
USP4-205ENST00000431357 KPRPQ5T749 579 aaPredicted RBP7.53□□□□□ -1.2
USP4-205ENST00000431357 A0A0U1RQV1 116 aa7.52□□□□□ -1.2
USP4-205ENST00000431357 KRTAP26-1Q6PEX3 210 aa7.52□□□□□ -1.2
USP4-205ENST00000431357 WFDC10BQ8IUB3 73 aa7.52□□□□□ -1.2
USP4-205ENST00000431357 UNC79Q9P2D8 2635 aa7.52□□□□□ -1.21
USP4-205ENST00000431357 ITPR2Q14571 2701 aa7.52□□□□□ -1.21
USP4-205ENST00000431357 HIGD2BQ4VC39 106 aa7.51□□□□□ -1.21
USP4-205ENST00000431357 Q6ZVQ6 151 aa7.51□□□□□ -1.21
USP4-205ENST00000431357 TRBV7-4A0A0J9YYF1 115 aa7.51□□□□□ -1.21
USP4-205ENST00000431357 LINC01547P58512 204 aaPredicted RBP7.51□□□□□ -1.21
USP4-205ENST00000431357 CXCL6P80162 114 aa7.51□□□□□ -1.21
USP4-205ENST00000431357 NBEAL2Q6ZNJ1 2754 aa7.5□□□□□ -1.21
USP4-205ENST00000431357 HELZ2Q9BYK8 2649 aaKnown RBP7.49□□□□□ -1.21
USP4-205ENST00000431357 M0R2N4 97 aa7.49□□□□□ -1.21
USP4-205ENST00000431357 C15orf56Q8N910 161 aa7.49□□□□□ -1.21
USP4-205ENST00000431357 HAMPP81172 84 aa7.48□□□□□ -1.21
USP4-205ENST00000431357 FASNP49327 2511 aaKnown RBP7.47□□□□□ -1.21
USP4-205ENST00000431357 LINC01556Q5JQF7 62 aa7.47□□□□□ -1.21
USP4-205ENST00000431357 Q6ZTC4 211 aa7.47□□□□□ -1.21
USP4-205ENST00000431357 LINC00528Q8N1L1 170 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms