RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 GAGE2DQ9UEU5 116 aa7.78□□□□□ -1.16
USP40-205ENST00000430158 PKHD1L1Q86WI1 4243 aa7.78□□□□□ -1.16
USP40-205ENST00000430158 J3QQQ9 107 aa7.77□□□□□ -1.17
USP40-205ENST00000430158 S100A2P29034 98 aa7.77□□□□□ -1.17
USP40-205ENST00000430158 SFTA2Q6UW10 78 aa7.77□□□□□ -1.17
USP40-205ENST00000430158 DPH3Q96FX2 82 aa7.77□□□□□ -1.17
USP40-205ENST00000430158 ERG28Q9UKR5 140 aa7.77□□□□□ -1.17
USP40-205ENST00000430158 IGKV2D-26A0A0A0MRZ7 120 aa7.76□□□□□ -1.17
USP40-205ENST00000430158 Q5VSD8 79 aa7.76□□□□□ -1.17
USP40-205ENST00000430158 NDUFA12Q9UI09 145 aa7.76□□□□□ -1.17
USP40-205ENST00000430158 PCLOQ9Y6V0 5065 aa7.76□□□□□ -1.17
USP40-205ENST00000430158 HERVK_113P61574 105 aa7.75□□□□□ -1.17
USP40-205ENST00000430158 COX17Q14061 63 aa7.75□□□□□ -1.17
USP40-205ENST00000430158 XAGE1AQ9HD64 81 aa7.75□□□□□ -1.17
USP40-205ENST00000430158 PFN2P35080 140 aa7.74□□□□□ -1.17
USP40-205ENST00000430158 SERTAD4-AS1Q5TG53 156 aa7.74□□□□□ -1.17
USP40-205ENST00000430158 MYMXA0A1B0GTQ4 84 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 C20orf202A1L168 122 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 NMUP48645 174 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 HERV-K104P63124 156 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 ANKRD39Q53RE8 183 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 KRTAP11-1Q8IUC1 163 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 ATOH7Q8N100 152 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 SND1-IT1Q9HBX3 110 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 PLA2G2DQ9UNK4 145 aa7.73□□□□□ -1.17
USP40-205ENST00000430158 SMIM13P0DJ93 91 aa7.72□□□□□ -1.17
USP40-205ENST00000430158 PHF5AQ7RTV0 110 aaKnown RBP7.72□□□□□ -1.17
USP40-205ENST00000430158 Q8NDZ9 215 aa7.72□□□□□ -1.17
USP40-205ENST00000430158 IGLV5-37A0A075B6J1 123 aa7.71□□□□□ -1.18
USP40-205ENST00000430158 LGALS3P17931 250 aaKnown RBP7.71□□□□□ -1.18
USP40-205ENST00000430158 LCE5AQ5TCM9 118 aa7.71□□□□□ -1.18
USP40-205ENST00000430158 FAM19A5Q7Z5A7 132 aaPredicted RBP7.71□□□□□ -1.18
USP40-205ENST00000430158 TTTY13Q9BZ97 58 aa7.71□□□□□ -1.18
USP40-205ENST00000430158 AKR1D1P51857 326 aa7.7□□□□□ -1.18
USP40-205ENST00000430158 LOC107984156A0A0G2JMH3 177 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 A0A0J9YXY3 114 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 PLA2G1BP04054 148 aaKnown RBP7.69□□□□□ -1.18
USP40-205ENST00000430158 VPREB1P12018 145 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 LINC00158P58513 81 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 RPL37AP61513 92 aaKnown RBP7.69□□□□□ -1.18
USP40-205ENST00000430158 ARL17AQ8IVW1 177 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 LITAFQ99732 161 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 TP73-AS1Q9UF72 201 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 C22orf24Q9Y442 160 aa7.69□□□□□ -1.18
USP40-205ENST00000430158 MYCBP2O75592 4640 aa7.68□□□□□ -1.18
USP40-205ENST00000430158 A0A0U1RRA0 63 aa7.68□□□□□ -1.18
USP40-205ENST00000430158 M0QXV9 152 aa7.68□□□□□ -1.18
USP40-205ENST00000430158 HNRNPA3P51991 378 aaKnown RBP7.68□□□□□ -1.18
USP40-205ENST00000430158 ADAMTSL4-AS1Q5T5F5 129 aa7.68□□□□□ -1.18
USP40-205ENST00000430158 MIR7-3HGQ8N6C7 128 aa7.68□□□□□ -1.18
USP40-205ENST00000430158 LINC00587B1AMM8 73 aa7.67□□□□□ -1.18
USP40-205ENST00000430158 PRR3P79522 188 aaKnown RBP7.67□□□□□ -1.18
USP40-205ENST00000430158 MEIG1Q5JSS6 88 aa7.67□□□□□ -1.18
USP40-205ENST00000430158 C7orf33Q8WU49 177 aa7.67□□□□□ -1.18
USP40-205ENST00000430158 TMA7Q9Y2S6 64 aaKnown RBP7.67□□□□□ -1.18
USP40-205ENST00000430158 EIF4EBP3O60516 100 aaPredicted RBP7.66□□□□□ -1.18
USP40-205ENST00000430158 PCP2Q8IVA1 136 aa7.66□□□□□ -1.18
USP40-205ENST00000430158 DAND5Q8N907 189 aa7.66□□□□□ -1.18
USP40-205ENST00000430158 PSORS1C2Q9UIG4 136 aa7.66□□□□□ -1.18
USP40-205ENST00000430158 ZNF815PA8K554 130 aa7.65□□□□□ -1.18
USP40-205ENST00000430158 TIMM17BO60830 172 aa7.65□□□□□ -1.18
USP40-205ENST00000430158 SCGB1D1O95968 90 aa7.65□□□□□ -1.18
USP40-205ENST00000430158 SOSTDC1Q6X4U4 206 aa7.65□□□□□ -1.18
USP40-205ENST00000430158 LINC00167Q96N53 147 aa7.65□□□□□ -1.18
USP40-205ENST00000430158 JOSD1Q15040 202 aaPredicted RBP7.64□□□□□ -1.19
USP40-205ENST00000430158 MRPL55Q7Z7F7 128 aaKnown RBP7.64□□□□□ -1.19
USP40-205ENST00000430158 LRP1Q07954 4544 aaKnown RBP7.64□□□□□ -1.19
USP40-205ENST00000430158 INAFM2P0DMQ5 153 aa7.63□□□□□ -1.19
USP40-205ENST00000430158 SRSF9Q13242 221 aaKnown RBP eCLIP7.63□□□□□ -1.19
USP40-205ENST00000430158 FAT3Q8TDW7 4589 aa7.62□□□□□ -1.19
USP40-205ENST00000430158 LBHQ53QV2 105 aaPredicted RBP7.62□□□□□ -1.19
USP40-205ENST00000430158 RPL24P83731 157 aaKnown RBP7.61□□□□□ -1.19
USP40-205ENST00000430158 PYY3Q5JQD4 70 aa7.61□□□□□ -1.19
USP40-205ENST00000430158 BOD1L2Q8IYS8 172 aa7.61□□□□□ -1.19
USP40-205ENST00000430158 IGLV1-50A0A075B6I6 118 aa7.6□□□□□ -1.19
USP40-205ENST00000430158 GAGE10A6NGK3 116 aa7.6□□□□□ -1.19
USP40-205ENST00000430158 NKAPP1Q8N9T2 125 aa7.6□□□□□ -1.19
USP40-205ENST00000430158 RPL37AP8A6NKH3 93 aa7.59□□□□□ -1.19
USP40-205ENST00000430158 HSBP1L1C9JCN9 74 aa7.59□□□□□ -1.19
USP40-205ENST00000430158 UBE2BP63146 152 aa7.59□□□□□ -1.19
USP40-205ENST00000430158 LINC00308Q8TCZ7 52 aa7.59□□□□□ -1.19
USP40-205ENST00000430158 DMBT1Q9UGM3 2413 aaPredicted RBP7.59□□□□□ -1.19
USP40-205ENST00000430158 M0R378 163 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 NDUFC2O95298 119 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 IGLV7-43P04211 117 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 KRTAP19-4Q3LI73 84 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 C1orf137Q5JT78 98 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 SPANXDQ9BXN6 97 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 SPANXCQ9NY87 97 aa7.58□□□□□ -1.2
USP40-205ENST00000430158 COX8AP10176 69 aa7.57□□□□□ -1.2
USP40-205ENST00000430158 PPDPFQ9H3Y8 114 aa7.57□□□□□ -1.2
USP40-205ENST00000430158 TRBV10-2A0A0K0K1G8 114 aa7.56□□□□□ -1.2
USP40-205ENST00000430158 DLEU1O43261 78 aa7.56□□□□□ -1.2
USP40-205ENST00000430158 NPC2P61916 151 aa7.56□□□□□ -1.2
USP40-205ENST00000430158 KRTAP13-1Q8IUC0 172 aa7.56□□□□□ -1.2
USP40-205ENST00000430158 KRTAP9-3Q9BYQ3 159 aa7.56□□□□□ -1.2
USP40-205ENST00000430158 IGKV2-28A0A075B6P5 120 aa7.55□□□□□ -1.2
USP40-205ENST00000430158 TMEM238C9JI98 176 aa7.55□□□□□ -1.2
USP40-205ENST00000430158 NCR3O14931 201 aa7.55□□□□□ -1.2
USP40-205ENST00000430158 IGKV2D-28P01615 120 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms