RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 HIST3H2BBQ8N257 126 aa9.09□□□□□ -0.95
LIMS1-206ENST00000414829 PSORS1C2Q9UIG4 136 aa9.08□□□□□ -0.96
LIMS1-206ENST00000414829 TSPEAR-AS2P59090 65 aa9.07□□□□□ -0.96
LIMS1-206ENST00000414829 SPINK6Q6UWN8 80 aa9.07□□□□□ -0.96
LIMS1-206ENST00000414829 KRTAP7-1Q8IUC3 87 aa9.07□□□□□ -0.96
LIMS1-206ENST00000414829 HIST1H2BLQ99880 126 aa9.07□□□□□ -0.96
LIMS1-206ENST00000414829 SRRM2Q9UQ35 2752 aaKnown RBP9.07□□□□□ -0.96
LIMS1-206ENST00000414829 OXTP01178 125 aa9.06□□□□□ -0.96
LIMS1-206ENST00000414829 SMIM13P0DJ93 91 aa9.06□□□□□ -0.96
LIMS1-206ENST00000414829 SNRPEP62304 92 aaKnown RBP9.06□□□□□ -0.96
LIMS1-206ENST00000414829 C1orf137Q5JT78 98 aa9.06□□□□□ -0.96
LIMS1-206ENST00000414829 MIEN1Q9BRT3 115 aa9.06□□□□□ -0.96
LIMS1-206ENST00000414829 MIR7-3HGQ8N6C7 128 aa9.05□□□□□ -0.96
LIMS1-206ENST00000414829 VPREB1P12018 145 aa9.04□□□□□ -0.96
LIMS1-206ENST00000414829 A0A0U1RRA0 63 aa9.03□□□□□ -0.96
LIMS1-206ENST00000414829 KRTAP29-1A8MX34 341 aaPredicted RBP9.03□□□□□ -0.96
LIMS1-206ENST00000414829 REG3GQ6UW15 175 aa9.03□□□□□ -0.96
LIMS1-206ENST00000414829 HSBP1L1C9JCN9 74 aa9.02□□□□□ -0.97
LIMS1-206ENST00000414829 J3QL48 77 aa9.02□□□□□ -0.97
LIMS1-206ENST00000414829 IGLV7-43P04211 117 aa9.02□□□□□ -0.97
LIMS1-206ENST00000414829 HNRNPA3P51991 378 aaKnown RBP9.02□□□□□ -0.97
LIMS1-206ENST00000414829 BOD1L2Q8IYS8 172 aa9.02□□□□□ -0.97
LIMS1-206ENST00000414829 IGKV2D-26A0A0A0MRZ7 120 aa9.01□□□□□ -0.97
LIMS1-206ENST00000414829 ZNF815PA8K554 130 aa9.01□□□□□ -0.97
LIMS1-206ENST00000414829 TIMM17BO60830 172 aa9.01□□□□□ -0.97
LIMS1-206ENST00000414829 DIRC1Q969H9 104 aa9.01□□□□□ -0.97
LIMS1-206ENST00000414829 LINC00167Q96N53 147 aa9.01□□□□□ -0.97
LIMS1-206ENST00000414829 FLG2Q5D862 2391 aaPredicted RBP9□□□□□ -0.97
LIMS1-206ENST00000414829 LOC107984156A0A0G2JMH3 177 aa9□□□□□ -0.97
LIMS1-206ENST00000414829 A0A0J9YXY3 114 aa9□□□□□ -0.97
LIMS1-206ENST00000414829 C5orf52A6NGY3 159 aa9□□□□□ -0.97
LIMS1-206ENST00000414829 S100A12P80511 92 aa9□□□□□ -0.97
LIMS1-206ENST00000414829 ARL17AQ8IVW1 177 aa9□□□□□ -0.97
LIMS1-206ENST00000414829 GAGE10A6NGK3 116 aa8.99□□□□□ -0.97
LIMS1-206ENST00000414829 M0R378 163 aa8.99□□□□□ -0.97
LIMS1-206ENST00000414829 BCE1O60756 84 aa8.99□□□□□ -0.97
LIMS1-206ENST00000414829 SRSF9Q13242 221 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMS1-206ENST00000414829 COPS9Q8WXC6 57 aa8.99□□□□□ -0.97
LIMS1-206ENST00000414829 RPL37AP8A6NKH3 93 aa8.98□□□□□ -0.97
LIMS1-206ENST00000414829 RPL28P46779 137 aaKnown RBP8.98□□□□□ -0.97
LIMS1-206ENST00000414829 IGLV1-50A0A075B6I6 118 aa8.97□□□□□ -0.97
LIMS1-206ENST00000414829 SCGB1D4Q6XE38 83 aa8.97□□□□□ -0.97
LIMS1-206ENST00000414829 KRTAP11-1Q8IUC1 163 aa8.97□□□□□ -0.97
LIMS1-206ENST00000414829 ATOH7Q8N100 152 aa8.97□□□□□ -0.97
LIMS1-206ENST00000414829 SPANXB1Q9NS25 103 aaPredicted RBP8.97□□□□□ -0.97
LIMS1-206ENST00000414829 MYCBP2O75592 4640 aa8.97□□□□□ -0.97
LIMS1-206ENST00000414829 IGKV2-28A0A075B6P5 120 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 TRBV10-2A0A0K0K1G8 114 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 TMEM238C9JI98 176 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 ZNF861PO60384 105 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 NDUFC2O95298 119 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 IGKV2D-28P01615 120 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 CBY1Q9Y3M2 126 aa8.96□□□□□ -0.98
LIMS1-206ENST00000414829 H0Y9J4 135 aa8.95□□□□□ -0.98
LIMS1-206ENST00000414829 DAND5Q8N907 189 aa8.95□□□□□ -0.98
LIMS1-206ENST00000414829 SCGB1D1O95968 90 aa8.94□□□□□ -0.98
LIMS1-206ENST00000414829 UBE2AP49459 152 aa8.94□□□□□ -0.98
LIMS1-206ENST00000414829 ANKRD39Q53RE8 183 aa8.94□□□□□ -0.98
LIMS1-206ENST00000414829 DMBT1Q9UGM3 2413 aaPredicted RBP8.93□□□□□ -0.98
LIMS1-206ENST00000414829 NCR3O14931 201 aa8.93□□□□□ -0.98
LIMS1-206ENST00000414829 Q6ZVH6 145 aa8.93□□□□□ -0.98
LIMS1-206ENST00000414829 PRYO14603 147 aa8.92□□□□□ -0.98
LIMS1-206ENST00000414829 Q8NDZ9 215 aa8.92□□□□□ -0.98
LIMS1-206ENST00000414829 TMEM126AQ9H061 195 aa8.92□□□□□ -0.98
LIMS1-206ENST00000414829 SPANXCQ9NY87 97 aa8.92□□□□□ -0.98
LIMS1-206ENST00000414829 LINC01600Q96MT4 127 aa8.91□□□□□ -0.98
LIMS1-206ENST00000414829 LITAFQ99732 161 aa8.91□□□□□ -0.98
LIMS1-206ENST00000414829 SPANXDQ9BXN6 97 aa8.91□□□□□ -0.98
LIMS1-206ENST00000414829 PPDPFQ9H3Y8 114 aa8.91□□□□□ -0.98
LIMS1-206ENST00000414829 IFITM1P13164 125 aa8.9□□□□□ -0.98
LIMS1-206ENST00000414829 S100A7L2Q5SY68 101 aa8.9□□□□□ -0.98
LIMS1-206ENST00000414829 ADAMTSL4-AS1Q5T5F5 129 aa8.9□□□□□ -0.98
LIMS1-206ENST00000414829 LINC00308Q8TCZ7 52 aa8.9□□□□□ -0.98
LIMS1-206ENST00000414829 TTTY13Q9BZ97 58 aa8.9□□□□□ -0.98
LIMS1-206ENST00000414829 PKHD1L1Q86WI1 4243 aa8.89□□□□□ -0.99
LIMS1-206ENST00000414829 DDTP30046 118 aa8.89□□□□□ -0.99
LIMS1-206ENST00000414829 FAM19A1Q7Z5A9 133 aa8.89□□□□□ -0.99
LIMS1-206ENST00000414829 KCNQ1DNQ9H478 68 aa8.89□□□□□ -0.99
LIMS1-206ENST00000414829 PCP2Q8IVA1 136 aa8.88□□□□□ -0.99
LIMS1-206ENST00000414829 TRBV10-3A0A0K0K1G6 114 aa8.87□□□□□ -0.99
LIMS1-206ENST00000414829 NPC2P61916 151 aa8.87□□□□□ -0.99
LIMS1-206ENST00000414829 SOSTDC1Q6X4U4 206 aa8.87□□□□□ -0.99
LIMS1-206ENST00000414829 KRTAP13-1Q8IUC0 172 aa8.87□□□□□ -0.99
LIMS1-206ENST00000414829 LINC00518Q8N0U6 118 aa8.87□□□□□ -0.99
LIMS1-206ENST00000414829 LINC00337Q8N6G1 96 aa8.87□□□□□ -0.99
LIMS1-206ENST00000414829 ETDCA0A1B0GVM5 59 aa8.86□□□□□ -0.99
LIMS1-206ENST00000414829 RPL13AP40429 203 aaKnown RBP8.86□□□□□ -0.99
LIMS1-206ENST00000414829 IGLV6-57P01721 117 aa8.85□□□□□ -0.99
LIMS1-206ENST00000414829 SPRR1AP35321 89 aa8.85□□□□□ -0.99
LIMS1-206ENST00000414829 PRLHP81277 87 aa8.84□□□□□ -0.99
LIMS1-206ENST00000414829 JOSD1Q15040 202 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-206ENST00000414829 VAMP8Q9BV40 100 aa8.84□□□□□ -0.99
LIMS1-206ENST00000414829 TRAV23DV6A0A075B6W5 121 aa8.83□□□□□ -1
LIMS1-206ENST00000414829 HINT1P49773 126 aaPredicted RBP8.83□□□□□ -1
LIMS1-206ENST00000414829 TMA7Q9Y2S6 64 aaKnown RBP8.83□□□□□ -1
LIMS1-206ENST00000414829 ZNF706Q9Y5V0 76 aaPredicted RBP8.83□□□□□ -1
LIMS1-206ENST00000414829 MT1HL1P0DM35 61 aa8.82□□□□□ -1
LIMS1-206ENST00000414829 DLEU1O43261 78 aa8.81□□□□□ -1
LIMS1-206ENST00000414829 EIF4EBP3O60516 100 aaPredicted RBP8.81□□□□□ -1
LIMS1-206ENST00000414829 COX8AP10176 69 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms